BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644859|ref|NP_207029.1| hypothetical protein
[Helicobacter pylori 26695]
(265 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207029.1| (NC_000915) hypothetical protein [Helicoba... 513 e-144
ref|NP_222937.1| (NC_000921) putative [Helicobacter pylori ... 506 e-143
ref|NP_282526.1| (NC_002163) putative periplasmic protein [... 53 4e-06
ref|NP_521013.1| (NC_003295) PROBABLE THIOL:DISULFIDE INTER... 43 0.003
ref|NP_273595.1| (NC_003112) thiol:disulfide interchange pr... 42 0.005
>ref|NP_207029.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64548 hypothetical protein HP0231 - Helicobacter pylori (strain 26695)
gb|AAD07309.1| (AE000543) H. pylori predicted coding region HP0231 [Helicobacter
pylori 26695]
Length = 265
Score = 513 bits (1320), Expect = e-144
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MILRASVLSALLLVGLGAAPKHSVSANDKRMQDNLVSVIEKQTNKKVRILEIKPLKSSQD 60
MILRASVLSALLLVGLGAAPKHSVSANDKRMQDNLVSVIEKQTNKKVRILEIKPLKSSQD
Sbjct: 1 MILRASVLSALLLVGLGAAPKHSVSANDKRMQDNLVSVIEKQTNKKVRILEIKPLKSSQD 60
Query: 61 LKMVVIEDPDTKYNIPLVVSKDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQN 120
LKMVVIEDPDTKYNIPLVVSKDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQN
Sbjct: 61 LKMVVIEDPDTKYNIPLVVSKDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQN 120
Query: 121 SAKLNAIFNEIPADYAIELPSTNAANKDKILYIVSDPMCPHCQKELTKLRDHLKENTVRM 180
SAKLNAIFNEIPADYAIELPSTNAANKDKILYIVSDPMCPHCQKELTKLRDHLKENTVRM
Sbjct: 121 SAKLNAIFNEIPADYAIELPSTNAANKDKILYIVSDPMCPHCQKELTKLRDHLKENTVRM 180
Query: 181 VVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTK 240
VVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTK
Sbjct: 181 VVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTK 240
Query: 241 VENTTKKIFESGVIKGVPFLYHYKA 265
VENTTKKIFESGVIKGVPFLYHYKA
Sbjct: 241 VENTTKKIFESGVIKGVPFLYHYKA 265
>ref|NP_222937.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71958 hypothetical protein jhp0216 - Helicobacter pylori (strain J99)
gb|AAD05803.1| (AE001460) putative [Helicobacter pylori J99]
Length = 265
Score = 506 bits (1304), Expect = e-143
Identities = 260/265 (98%), Positives = 264/265 (99%)
Query: 1 MILRASVLSALLLVGLGAAPKHSVSANDKRMQDNLVSVIEKQTNKKVRILEIKPLKSSQD 60
MILRASVLSALLLVGLGAAPKHSVSA+DKRMQDNLVSVIEKQTNKKVRILEIKPLKSSQD
Sbjct: 1 MILRASVLSALLLVGLGAAPKHSVSASDKRMQDNLVSVIEKQTNKKVRILEIKPLKSSQD 60
Query: 61 LKMVVIEDPDTKYNIPLVVSKDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQN 120
LKMVVIEDPDTKYNIPLVVSKDGNL+IGLSNIFFSNKSDDV+LVAETNQK+QALNATQQN
Sbjct: 61 LKMVVIEDPDTKYNIPLVVSKDGNLVIGLSNIFFSNKSDDVKLVAETNQKIQALNATQQN 120
Query: 121 SAKLNAIFNEIPADYAIELPSTNAANKDKILYIVSDPMCPHCQKELTKLRDHLKENTVRM 180
SAKLNAIFNEIPADYAIELPSTNA NKDKILYIVSDPMCPHCQKELTKLRDHLKENTVRM
Sbjct: 121 SAKLNAIFNEIPADYAIELPSTNAENKDKILYIVSDPMCPHCQKELTKLRDHLKENTVRM 180
Query: 181 VVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTK 240
VVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTK
Sbjct: 181 VVVGWLGVNSAKKAALIQEEMAKARARGASVEDKISILEKIYSTQYDINAQKEPEDLRTK 240
Query: 241 VENTTKKIFESGVIKGVPFLYHYKA 265
VENTTKKIFESGVIKGVPFLYHYKA
Sbjct: 241 VENTTKKIFESGVIKGVPFLYHYKA 265
>ref|NP_282526.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||A81283 probable periplasmic protein Cj1380 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73807.1| (AL139078) putative periplasmic protein [Campylobacter jejuni]
Length = 236
Score = 52.8 bits (125), Expect = 4e-06
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 151 LYIVSDPMCPHCQKELTKLRDHLKENTVRMVVVGWLGVNSAKKAALIQEEMAKARARGAS 210
+Y+ SDP CP+C++ L ++ D LK V ++ G ++ +K+ALI +E KA+ +
Sbjct: 131 IYVFSDPECPYCREHLAQIDDELKNYQVNYILTPVHGKSAFEKSALIYKEAKKAK----N 186
Query: 211 VEDKISILEKIYSTQYDINAQKEPE 235
++KI+IL K YD N + P+
Sbjct: 187 DKEKIAILNK----YYDANIKNYPK 207
>ref|NP_521013.1| (NC_003295) PROBABLE THIOL:DISULFIDE INTERCHANGE PROTEIN [Ralstonia
solanacearum]
emb|CAD16599.1| (AL646072) PROBABLE THIOL:DISULFIDE INTERCHANGE PROTEIN [Ralstonia
solanacearum]
Length = 248
Score = 43.1 bits (100), Expect = 0.003
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 29/203 (14%)
Query: 5 ASVLSALLLVGLGAAPKHSVSANDKRMQDNLVSVIEKQTNKKVRILEIKPLKSSQDLKMV 64
A++ SA L+V +GA + A + + KV+ K L S+ ++K V
Sbjct: 8 AAIASAALVVAMGAGYALTAGAAEPALD-------------KVKASVQKALGSNVEIKGV 54
Query: 65 VIEDPDTKYNIPLVVSKDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNATQQNSAKL 124
Y + L S + +++ + L + A N TQ+ A++
Sbjct: 55 AKSPLPGLYEVNLG-----------SQVVYTDATGRYVLNGDLLDTQTATNLTQERMAEI 103
Query: 125 NAI-FNEIPADYAIELPSTNAANKDKILYIVSDPMCPHCQKELTKLRDHLKENTVRMVVV 183
N I ++++P D A++ N A K + + SDP CP+C K L ++ + TV +
Sbjct: 104 NRIKWSDLPLDRAVKWVKGNGARK---VAVFSDPNCPYCHK-LEQMFSQVDNITVYTFLF 159
Query: 184 GWLGVNSAKKAALIQEEMAKARA 206
L +S KA I +A+A
Sbjct: 160 PILSEDSNTKAKQIWCASDRAKA 182
>ref|NP_273595.1| (NC_003112) thiol:disulfide interchange protein DsbC [Neisseria
meningitidis MC58]
ref|NP_283528.1| (NC_003116) putative thiol:disulphide interchange protein
[Neisseria meningitidis Z2491]
pir||E81185 thiol-disulfide interchange protein dsbC homolog NMB0550 [imported]
- Neisseria meningitidis (group B strain MD58, group A
strain Z2491)
gb|AAF40979.1| (AE002411) thiol:disulfide interchange protein DsbC [Neisseria
meningitidis MC58]
emb|CAB84014.1| (AL162754) putative thiol:disulphide interchange protein [Neisseria
meningitidis Z2491]
Length = 260
Score = 42.4 bits (98), Expect = 0.005
Identities = 44/153 (28%), Positives = 71/153 (45%), Gaps = 17/153 (11%)
Query: 57 SSQDLKMVVIEDPDTKYNIPLVVSKDGNLIIGLSNIFFSNKSDDVQLVAETNQKVQALNA 116
S+QDLK++ + + K +VVS I +++ V E N
Sbjct: 56 SAQDLKVLSVSETPVKGIYEVVVSG--------RQIIYTDAEGGYMFVGELINIDTRKNL 107
Query: 117 TQQNSAKLNAI-FNEIPADYAIELPSTNAANKDKILYIVSDPMCPHCQKELTKLRDHLKE 175
T++ +A LN I F +P D AI+ N K + + SDP CP C K L + + +
Sbjct: 108 TEERAADLNKIDFASLPLDKAIKEVRGNGKLK---VAVFSDPDCPFC-KRLEHEFEKMTD 163
Query: 176 NTVR--MVVVGWLGVNSAKKAALI--QEEMAKA 204
TV M+ + L ++A+KA ++ Q + AKA
Sbjct: 164 VTVYSFMMPIAGLHPDAARKAQILWCQPDRAKA 196
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.314 0.131 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,687,755
Number of Sequences: 1026957
Number of extensions: 5337552
Number of successful extensions: 14789
Number of sequences better than 1.0e-02: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14785
Number of HSP's gapped (non-prelim): 5
length of query: 265
length of database: 324,149,939
effective HSP length: 119
effective length of query: 146
effective length of database: 201,942,056
effective search space: 29483540176
effective search space used: 29483540176
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 96 (41.6 bits)