BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644864|ref|NP_207034.1| hypothetical protein
[Helicobacter pylori 26695]
         (123 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207034.1|  (NC_000915) hypothetical protein [Helicoba...   258  1e-68
ref|NP_222942.1|  (NC_000921) putative [Helicobacter pylori ...   233  4e-61
ref|NP_282015.1|  (NC_002163) putative periplasmic protein [...    86  1e-16

>ref|NP_207034.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64549 hypothetical protein HP0236 - Helicobacter pylori (strain 26695)
 gb|AAD07310.1| (AE000543) H. pylori predicted coding region HP0236 [Helicobacter
           pylori 26695]
          Length = 123

 Score =  258 bits (658), Expect = 1e-68
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MRLFIALVLFWWWLSLNAKEADFISDLEYGMALYKNPRGVACAKCHGIKGEQQEITFYYE 60
           MRLFIALVLFWWWLSLNAKEADFISDLEYGMALYKNPRGVACAKCHGIKGEQQEITFYYE
Sbjct: 1   MRLFIALVLFWWWLSLNAKEADFISDLEYGMALYKNPRGVACAKCHGIKGEQQEITFYYE 60

Query: 61  KGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYIISLEHKEERKDS 120
           KGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYIISLEHKEERKDS
Sbjct: 61  KGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYIISLEHKEERKDS 120

Query: 121 PKP 123
           PKP
Sbjct: 121 PKP 123



>ref|NP_222942.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71958 hypothetical protein jhp0221 - Helicobacter pylori (strain J99)
 gb|AAD05808.1| (AE001460) putative [Helicobacter pylori J99]
          Length = 123

 Score =  233 bits (593), Expect = 4e-61
 Identities = 112/123 (91%), Positives = 115/123 (93%)

Query: 1   MRLFIALVLFWWWLSLNAKEADFISDLEYGMALYKNPRGVACAKCHGIKGEQQEITFYYE 60
           MRL IALVLF WWL+L AKEADFISD EYG+ALYKNPRGVACAKCHGIKGEQQEITFYYE
Sbjct: 1   MRLLIALVLFLWWLNLGAKEADFISDWEYGLALYKNPRGVACAKCHGIKGEQQEITFYYE 60

Query: 61  KGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYIISLEHKEERKDS 120
           KGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYI SL HK+ERKD 
Sbjct: 61  KGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYITSLGHKDERKDP 120

Query: 121 PKP 123
            KP
Sbjct: 121 SKP 123



>ref|NP_282015.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
 pir||F81358 probable periplasmic protein Cj0854c [imported] - Campylobacter
           jejuni (strain NCTC 11168)
 emb|CAB73119.1| (AL139076) putative periplasmic protein [Campylobacter jejuni]
          Length = 115

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 3/113 (2%)

Query: 7   LVLFWWWLSLNAKEADFISDLEYGMALYKNPRGVACAKCHGIKGEQQEITFYYEKGEKKI 66
           +VL ++  S++   ADFI+  EY   LY+NPRG++C +CHG  G +Q + +Y + G K  
Sbjct: 3   IVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGADGSEQILGYYMKNGIKTA 62

Query: 67  LYAPKINHLDFKTFKDALSL---GKGMMPKYNLNLEEIQAIYLYIISLEHKEE 116
              P I +L F+ FK++L+     K +MP Y+L  +EI  +Y YI     +E+
Sbjct: 63  YKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVTLYNYIKQFSKEEK 115



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.321    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,830,205
Number of Sequences: 1026957
Number of extensions: 3024382
Number of successful extensions: 5803
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5799
Number of HSP's gapped (non-prelim): 3
length of query: 123
length of database: 324,149,939
effective HSP length: 99
effective length of query: 24
effective length of database: 222,481,196
effective search space: 5339548704
effective search space used: 5339548704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)