BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644869|ref|NP_207039.1| hypothetical protein
[Helicobacter pylori 26695]
         (131 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207039.1|  (NC_000915) hypothetical protein [Helicoba...   265  9e-71
ref|NP_222947.1|  (NC_000921) putative [Helicobacter pylori ...   250  2e-66
ref|NP_281724.1|  (NC_002163) hypothetical protein Cj0540 [C...    42  0.002

>ref|NP_207039.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64550 hypothetical protein HP0241 - Helicobacter pylori (strain 26695)
 gb|AAD07311.1| (AE000543) H. pylori predicted coding region HP0241 [Helicobacter
           pylori 26695]
          Length = 131

 Score =  265 bits (676), Expect = 9e-71
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MNELIRYGLIFLFFLKAFGLDYGIDKTLELKKDEVFKAIIKDTSNEQTKEITLYWTLYAN 60
           MNELIRYGLIFLFFLKAFGLDYGIDKTLELKKDEVFKAIIKDTSNEQTKEITLYWTLYAN
Sbjct: 1   MNELIRYGLIFLFFLKAFGLDYGIDKTLELKKDEVFKAIIKDTSNEQTKEITLYWTLYAN 60

Query: 61  KGLVINMRFNHFPYQFILYTDHARNTYNLKVFEEKFSSNSTLSLVFKDFKEDKAALRLLA 120
           KGLVINMRFNHFPYQFILYTDHARNTYNLKVFEEKFSSNSTLSLVFKDFKEDKAALRLLA
Sbjct: 61  KGLVINMRFNHFPYQFILYTDHARNTYNLKVFEEKFSSNSTLSLVFKDFKEDKAALRLLA 120

Query: 121 LMPLVFSPKEP 131
           LMPLVFSPKEP
Sbjct: 121 LMPLVFSPKEP 131



>ref|NP_222947.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||E71959 hypothetical protein jhp0226 - Helicobacter pylori (strain J99)
 gb|AAD05798.1| (AE001460) putative [Helicobacter pylori J99]
          Length = 131

 Score =  250 bits (639), Expect = 2e-66
 Identities = 122/131 (93%), Positives = 125/131 (95%)

Query: 1   MNELIRYGLIFLFFLKAFGLDYGIDKTLELKKDEVFKAIIKDTSNEQTKEITLYWTLYAN 60
           MNELIRYGLIFL FLKAFGLDYGIDKTLELKKDE F+A+IKDTSNEQTKEITLYWTLYAN
Sbjct: 1   MNELIRYGLIFLVFLKAFGLDYGIDKTLELKKDEAFRAVIKDTSNEQTKEITLYWTLYAN 60

Query: 61  KGLVINMRFNHFPYQFILYTDHARNTYNLKVFEEKFSSNSTLSLVFKDFKEDKAALRLLA 120
           KGLVINMRFNHFPYQFILYTDHARNTYNLKVFEE FSSNS LSLVFKDFKEDKA LRLLA
Sbjct: 61  KGLVINMRFNHFPYQFILYTDHARNTYNLKVFEENFSSNSVLSLVFKDFKEDKATLRLLA 120

Query: 121 LMPLVFSPKEP 131
            MPL+FSPKEP
Sbjct: 121 PMPLIFSPKEP 131



>ref|NP_281724.1| (NC_002163) hypothetical protein Cj0540 [Campylobacter jejuni]
 pir||D81400 hypothetical protein Cj0540 [imported] - Campylobacter jejuni
          (strain NCTC 11168)
 emb|CAB75176.1| (AL139075) hypothetical protein Cj0540 [Campylobacter jejuni]
          Length = 178

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 22/72 (30%), Positives = 36/72 (49%), Gaps = 3/72 (4%)

Query: 10 IFLFFLKAFGLDYGIDKTLE--LKKDEVFKAIIKDTSNE-QTKEITLYWTLYANKGLVIN 66
          IF  F      +   D T +  LKKDE     IK+   E + +    YWTL+ N  ++++
Sbjct: 11 IFFIFSNVLASEPTFDYTYKFILKKDERASVQIKEIGYEDKVQNFDFYWTLFDNTNIIVH 70

Query: 67 MRFNHFPYQFIL 78
           +F  +P QF++
Sbjct: 71 SKFRKYPRQFVM 82



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.324    0.142    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,059,559
Number of Sequences: 1026957
Number of extensions: 2957977
Number of successful extensions: 9404
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9402
Number of HSP's gapped (non-prelim): 3
length of query: 131
length of database: 324,149,939
effective HSP length: 107
effective length of query: 24
effective length of database: 214,265,540
effective search space: 5142372960
effective search space used: 5142372960
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 90 (39.3 bits)