BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644873|ref|NP_207043.1| hypothetical protein
[Helicobacter pylori 26695]
         (105 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_222951.1|  (NC_000921) putative [Helicobacter pylori ...   209  5e-54
ref|NP_282603.1|  (NC_002163) hypothetical protein Cj1463 [C...    86  6e-17

>ref|NP_222951.1| (NC_000921) putative [Helicobacter pylori J99]
 ref|NP_207043.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 sp|O25027|Y245_HELPY Hypothetical protein HP0245/JHP0230
 pir||E64550 hypothetical protein HP0245 - Helicobacter pylori
 gb|AAD07321.1| (AE000544) H. pylori predicted coding region HP0245 [Helicobacter
           pylori 26695]
 gb|AAD05816.1| (AE001461) putative [Helicobacter pylori J99]
          Length = 105

 Score =  209 bits (532), Expect = 5e-54
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MINNNKAMLEQYNVSKLASEEKLKALAQNKNDKLLKEQTDSFEALLLKFMLDSAMKMDNP 60
           MINNNKAMLEQYNVSKLASEEKLKALAQNKNDKLLKEQTDSFEALLLKFMLDSAMKMDNP
Sbjct: 1   MINNNKAMLEQYNVSKLASEEKLKALAQNKNDKLLKEQTDSFEALLLKFMLDSAMKMDNP 60

Query: 61  LYPKAPGDEIYASMYKDTLSKELSGNFGYSEMLFNFLKEQEKQKP 105
           LYPKAPGDEIYASMYKDTLSKELSGNFGYSEMLFNFLKEQEKQKP
Sbjct: 61  LYPKAPGDEIYASMYKDTLSKELSGNFGYSEMLFNFLKEQEKQKP 105



>ref|NP_282603.1| (NC_002163) hypothetical protein Cj1463 [Campylobacter jejuni]
 sp|Q9PMJ7|YE63_CAMJE Hypothetical protein Cj1463
 pir||F81292 hypothetical protein Cj1463 [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB73886.1| (AL139078) hypothetical protein Cj1463 [Campylobacter jejuni]
          Length = 113

 Score = 86.3 bits (212), Expect = 6e-17
 Identities = 40/75 (53%), Positives = 57/75 (75%)

Query: 26  LAQNKNDKLLKEQTDSFEALLLKFMLDSAMKMDNPLYPKAPGDEIYASMYKDTLSKELSG 85
           + ++K DK LKEQT++FEA  LK +LD ++K  N L+ K   DEIY+SMY DT+SK LSG
Sbjct: 38  VTKSKEDKALKEQTNAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSG 97

Query: 86  NFGYSEMLFNFLKEQ 100
             G+S++L++FLKE+
Sbjct: 98  GMGFSKLLYDFLKER 112



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.310    0.128    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,414,327
Number of Sequences: 1026957
Number of extensions: 2230582
Number of successful extensions: 5847
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5845
Number of HSP's gapped (non-prelim): 2
length of query: 105
length of database: 324,149,939
effective HSP length: 81
effective length of query: 24
effective length of database: 240,966,422
effective search space: 5783194128
effective search space used: 5783194128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 90 (39.3 bits)