BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644877|ref|NP_207047.1| hypothetical protein
[Helicobacter pylori 26695]
         (179 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207047.1|  (NC_000915) hypothetical protein [Helicoba...   350  5e-96
ref|NP_222955.1|  (NC_000921) putative [Helicobacter pylori ...   331  3e-90

>ref|NP_207047.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64551 hypothetical protein HP0249 - Helicobacter pylori (strain 26695)
 gb|AAD07322.1| (AE000544) H. pylori predicted coding region HP0249 [Helicobacter
           pylori 26695]
          Length = 179

 Score =  350 bits (897), Expect = 5e-96
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MASLAFIQAFLESFKGFLSQATLISVLIASVLILFCAILLLLALLLRNRLASYIATAAFL 60
           MASLAFIQAFLESFKGFLSQATLISVLIASVLILFCAILLLLALLLRNRLASYIATAAFL
Sbjct: 1   MASLAFIQAFLESFKGFLSQATLISVLIASVLILFCAILLLLALLLRNRLASYIATAAFL 60

Query: 61  GAFLSMPFVLNILLTQAIYPIETRILHANPLSYSNAFSLQVGVKNHSKFTLNKCVLRLEV 120
           GAFLSMPFVLNILLTQAIYPIETRILHANPLSYSNAFSLQVGVKNHSKFTLNKCVLRLEV
Sbjct: 61  GAFLSMPFVLNILLTQAIYPIETRILHANPLSYSNAFSLQVGVKNHSKFTLNKCVLRLEV 120

Query: 121 LKNPHNFVEEHAFKWFVKKSYEKIFKEKILPKESKVFSFFIDNYPYSKTAPYQVSLFCL 179
           LKNPHNFVEEHAFKWFVKKSYEKIFKEKILPKESKVFSFFIDNYPYSKTAPYQVSLFCL
Sbjct: 121 LKNPHNFVEEHAFKWFVKKSYEKIFKEKILPKESKVFSFFIDNYPYSKTAPYQVSLFCL 179



>ref|NP_222955.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||D71957 hypothetical protein jhp0234 - Helicobacter pylori (strain J99)
 gb|AAD05810.1| (AE001461) putative [Helicobacter pylori J99]
          Length = 179

 Score =  331 bits (848), Expect = 3e-90
 Identities = 169/179 (94%), Positives = 174/179 (96%)

Query: 1   MASLAFIQAFLESFKGFLSQATLISVLIASVLILFCAILLLLALLLRNRLASYIATAAFL 60
           MASLAF+QAFLESFKGFLSQATLISVLIASVLILFCAILLLLALLLRNR ASYI TAAFL
Sbjct: 1   MASLAFVQAFLESFKGFLSQATLISVLIASVLILFCAILLLLALLLRNRWASYITTAAFL 60

Query: 61  GAFLSMPFVLNILLTQAIYPIETRILHANPLSYSNAFSLQVGVKNHSKFTLNKCVLRLEV 120
           GAFLSMPFVLN+LLTQAIYPIETRILHANPLSYSNAFSLQVGVKN SKF+LNKCVLRLEV
Sbjct: 61  GAFLSMPFVLNVLLTQAIYPIETRILHANPLSYSNAFSLQVGVKNISKFSLNKCVLRLEV 120

Query: 121 LKNPHNFVEEHAFKWFVKKSYEKIFKEKILPKESKVFSFFIDNYPYSKTAPYQVSLFCL 179
           LKNPHNFVEE AFKWFVKKSYEK FKEKILP+ESKVFSFFID+YPYSKTAPYQVSLFCL
Sbjct: 121 LKNPHNFVEERAFKWFVKKSYEKTFKEKILPEESKVFSFFIDDYPYSKTAPYQVSLFCL 179



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.329    0.141    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,906,143
Number of Sequences: 1026957
Number of extensions: 3430559
Number of successful extensions: 14190
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14188
Number of HSP's gapped (non-prelim): 2
length of query: 179
length of database: 324,149,939
effective HSP length: 113
effective length of query: 66
effective length of database: 208,103,798
effective search space: 13734850668
effective search space used: 13734850668
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 93 (40.4 bits)