BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644889|ref|NP_207059.1| hypothetical protein
[Helicobacter pylori 26695]
         (132 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207059.1|  (NC_000915) hypothetical protein [Helicoba...   270  3e-72
ref|NP_222966.1|  (NC_000921) putative [Helicobacter pylori ...    78  2e-14

>ref|NP_207059.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||E64552 hypothetical protein HP0261 - Helicobacter pylori (strain 26695)
 gb|AAD07335.1| (AE000545) H. pylori predicted coding region HP0261 [Helicobacter
           pylori 26695]
          Length = 132

 Score =  270 bits (689), Expect = 3e-72
 Identities = 132/132 (100%), Positives = 132/132 (100%)

Query: 1   MQFLNQSLGFFNKGCFEPIDRNFITESYQALKPIEEIQNKYNKHDNDSFLNELRDSMVAL 60
           MQFLNQSLGFFNKGCFEPIDRNFITESYQALKPIEEIQNKYNKHDNDSFLNELRDSMVAL
Sbjct: 1   MQFLNQSLGFFNKGCFEPIDRNFITESYQALKPIEEIQNKYNKHDNDSFLNELRDSMVAL 60

Query: 61  YLDYELINIQKHGLDAKRSSSDEFLEIKQVSFQSQLIKEFEFKMKPIDSKEQELINLFNL 120
           YLDYELINIQKHGLDAKRSSSDEFLEIKQVSFQSQLIKEFEFKMKPIDSKEQELINLFNL
Sbjct: 61  YLDYELINIQKHGLDAKRSSSDEFLEIKQVSFQSQLIKEFEFKMKPIDSKEQELINLFNL 120

Query: 121 KFGHFSWENYLA 132
           KFGHFSWENYLA
Sbjct: 121 KFGHFSWENYLA 132



>ref|NP_222966.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71955 hypothetical protein jhp0245 - Helicobacter pylori (strain J99)
 gb|AAD05821.1| (AE001462) putative [Helicobacter pylori J99]
          Length = 152

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 36/39 (92%), Positives = 38/39 (97%)

Query: 94  SQLIKEFEFKMKPIDSKEQELINLFNLKFGHFSWENYLA 132
           S+LIKEFEFK+KPIDSKEQELINLFNLKFG FSWENYLA
Sbjct: 114 SKLIKEFEFKIKPIDSKEQELINLFNLKFGRFSWENYLA 152



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 21/23 (91%), Positives = 22/23 (95%)

Query: 73 GLDAKRSSSDEFLEIKQVSFQSQ 95
          GLD KRSSSDEFLEIKQVSFQS+
Sbjct: 21 GLDTKRSSSDEFLEIKQVSFQSK 43



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.320    0.138    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,547,083
Number of Sequences: 1026957
Number of extensions: 2873472
Number of successful extensions: 10108
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10105
Number of HSP's gapped (non-prelim): 3
length of query: 132
length of database: 324,149,939
effective HSP length: 108
effective length of query: 24
effective length of database: 213,238,583
effective search space: 5117725992
effective search space used: 5117725992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)