BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644890|ref|NP_207060.1| hypothetical protein
[Helicobacter pylori 26695]
         (200 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207060.1|  (NC_000915) hypothetical protein [Helicoba...   401  e-111
sp|O25042|Y262_HELPY  Hypothetical protein HP0262                 385  e-106
ref|NP_222967.1|  (NC_000921) putative [Helicobacter pylori ...   285  2e-76
ref|NP_248204.1|  (NC_000909) DNA modification methylase [Me...   155  3e-37
sp|P81326|T2M6_METJA  Putative type II restriction enzyme Mj...   155  3e-37
ref|NP_222968.1|  (NC_000921) putative [Helicobacter pylori ...    61  8e-09

>ref|NP_207060.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||F64552 hypothetical protein HP0262 - Helicobacter pylori (strain 26695)
 gb|AAD07336.1| (AE000545) H. pylori predicted coding region HP0262 [Helicobacter
           pylori 26695]
          Length = 200

 Score =  401 bits (1030), Expect = e-111
 Identities = 200/200 (100%), Positives = 200/200 (100%)

Query: 1   MDFYGLKVFGLGLADVILERFKDFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQNKS 60
           MDFYGLKVFGLGLADVILERFKDFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQNKS
Sbjct: 1   MDFYGLKVFGLGLADVILERFKDFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQNKS 60

Query: 61  KEEASILARQGFVSAVGRALEKIIELLLKDFCIKNNVKMTNDKILRAKRINGELDRVKRA 120
           KEEASILARQGFVSAVGRALEKIIELLLKDFCIKNNVKMTNDKILRAKRINGELDRVKRA
Sbjct: 61  KEEASILARQGFVSAVGRALEKIIELLLKDFCIKNNVKMTNDKILRAKRINGELDRVKRA 120

Query: 121 LWVHFGEYSVLPDIILYQTNKDNIKILAILSVKNSFRERFTETPYWKLKLLQSPVTSHIK 180
           LWVHFGEYSVLPDIILYQTNKDNIKILAILSVKNSFRERFTETPYWKLKLLQSPVTSHIK
Sbjct: 121 LWVHFGEYSVLPDIILYQTNKDNIKILAILSVKNSFRERFTETPYWKLKLLQSPVTSHIK 180

Query: 181 VFMITPDNDDEISFKDKPKG 200
           VFMITPDNDDEISFKDKPKG
Sbjct: 181 VFMITPDNDDEISFKDKPKG 200



>sp|O25042|Y262_HELPY Hypothetical protein HP0262
          Length = 193

 Score =  385 bits (988), Expect = e-106
 Identities = 192/193 (99%), Positives = 193/193 (99%)

Query: 8   VFGLGLADVILERFKDFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQNKSKEEASIL 67
           +FGLGLADVILERFKDFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQNKSKEEASIL
Sbjct: 1   MFGLGLADVILERFKDFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQNKSKEEASIL 60

Query: 68  ARQGFVSAVGRALEKIIELLLKDFCIKNNVKMTNDKILRAKRINGELDRVKRALWVHFGE 127
           ARQGFVSAVGRALEKIIELLLKDFCIKNNVKMTNDKILRAKRINGELDRVKRALWVHFGE
Sbjct: 61  ARQGFVSAVGRALEKIIELLLKDFCIKNNVKMTNDKILRAKRINGELDRVKRALWVHFGE 120

Query: 128 YSVLPDIILYQTNKDNIKILAILSVKNSFRERFTETPYWKLKLLQSPVTSHIKVFMITPD 187
           YSVLPDIILYQTNKDNIKILAILSVKNSFRERFTETPYWKLKLLQSPVTSHIKVFMITPD
Sbjct: 121 YSVLPDIILYQTNKDNIKILAILSVKNSFRERFTETPYWKLKLLQSPVTSHIKVFMITPD 180

Query: 188 NDDEISFKDKPKG 200
           NDDEISFKDKPKG
Sbjct: 181 NDDEISFKDKPKG 193



>ref|NP_222967.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71955 hypothetical protein jhp0246 - Helicobacter pylori (strain J99)
 gb|AAD05822.1| (AE001462) putative [Helicobacter pylori J99]
          Length = 172

 Score =  285 bits (730), Expect = 2e-76
 Identities = 144/162 (88%), Positives = 152/162 (92%)

Query: 8   VFGLGLADVILERFKDFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQNKSKEEASIL 67
           +FGL LAD+ILERFKDFMRE PEPYKFLQVFYAQEKERFLNHKM+DYIKQNKSKEEASIL
Sbjct: 1   MFGLSLADMILERFKDFMREYPEPYKFLQVFYAQEKERFLNHKMNDYIKQNKSKEEASIL 60

Query: 68  ARQGFVSAVGRALEKIIELLLKDFCIKNNVKMTNDKILRAKRINGELDRVKRALWVHFGE 127
           ARQGFVS +GRALEKIIELLLKDFCIKNNVKMTNDK LRAKRINGELD+VKRAL VHFG 
Sbjct: 61  ARQGFVSVIGRALEKIIELLLKDFCIKNNVKMTNDKTLRAKRINGELDKVKRALLVHFGG 120

Query: 128 YSVLPDIILYQTNKDNIKILAILSVKNSFRERFTETPYWKLK 169
           YSVLPDIILYQTNKDNIKILAILSVKNSFRERFT+    ++K
Sbjct: 121 YSVLPDIILYQTNKDNIKILAILSVKNSFRERFTKDALLEIK 162



>ref|NP_248204.1| (NC_000909) DNA modification methylase [Methanococcus jannaschii]
           [Methanocaldococcus jannaschii]
          Length = 485

 Score =  155 bits (392), Expect = 3e-37
 Identities = 79/164 (48%), Positives = 116/164 (70%), Gaps = 5/164 (3%)

Query: 41  QEKERFLNHKMSDYIKQNKSKEEASILARQGFVSAVGRALEKIIELLLKDFCIKNNVKMT 100
           +E+E ++ +K+ +Y+KQ  SK++A   A Q + + +G  ++ +I  LLK F   + +K+T
Sbjct: 279 KEREEYIRNKVEEYLKQGFSKDDAVNKANQSWRTYIGHRIQDVIYNLLKKFLKDSGLKVT 338

Query: 101 NDKILRAKRINGELDRVKRALWVHFGEYSVLPD--IILYQTNKDNIKILAILSVKNSFRE 158
            DK L  + +  ELD+VKR + +++GEY  LPD  +I+Y+   ++IKI+AI+SVKNSFRE
Sbjct: 339 TDKALNNRNLPEELDKVKRLIAINYGEYLFLPDADVIVYKVENNDIKIIAIISVKNSFRE 398

Query: 159 RFTETPYWKLKLLQSPVTSHIKVFMITPDNDDEISFK---DKPK 199
           R  ET YWKLKL +SPVTSHIKVF+ TPD D+EIS+K    KPK
Sbjct: 399 RRFETTYWKLKLKESPVTSHIKVFLATPDKDNEISYKCPNGKPK 442



>sp|P81326|T2M6_METJA Putative type II restriction enzyme MjaVIP (Endonuclease MjaVIP)
           (R.MjaVIP)
 gb|AAB99221.1| (U67562) conserved hypothetical protein [Methanococcus jannaschii]
           [Methanocaldococcus jannaschii]
          Length = 226

 Score =  155 bits (392), Expect = 3e-37
 Identities = 79/164 (48%), Positives = 116/164 (70%), Gaps = 5/164 (3%)

Query: 41  QEKERFLNHKMSDYIKQNKSKEEASILARQGFVSAVGRALEKIIELLLKDFCIKNNVKMT 100
           +E+E ++ +K+ +Y+KQ  SK++A   A Q + + +G  ++ +I  LLK F   + +K+T
Sbjct: 20  KEREEYIRNKVEEYLKQGFSKDDAVNKANQSWRTYIGHRIQDVIYNLLKKFLKDSGLKVT 79

Query: 101 NDKILRAKRINGELDRVKRALWVHFGEYSVLPD--IILYQTNKDNIKILAILSVKNSFRE 158
            DK L  + +  ELD+VKR + +++GEY  LPD  +I+Y+   ++IKI+AI+SVKNSFRE
Sbjct: 80  TDKALNNRNLPEELDKVKRLIAINYGEYLFLPDADVIVYKVENNDIKIIAIISVKNSFRE 139

Query: 159 RFTETPYWKLKLLQSPVTSHIKVFMITPDNDDEISFK---DKPK 199
           R  ET YWKLKL +SPVTSHIKVF+ TPD D+EIS+K    KPK
Sbjct: 140 RRFETTYWKLKLKESPVTSHIKVFLATPDKDNEISYKCPNGKPK 183



>ref|NP_222968.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71956 hypothetical protein jhp0247 - Helicobacter pylori (strain J99)
 gb|AAD05823.1| (AE001462) putative [Helicobacter pylori J99]
          Length = 69

 Score = 60.8 bits (146), Expect = 8e-09
 Identities = 27/29 (93%), Positives = 29/29 (99%)

Query: 171 LQSPVTSHIKVFMITPDNDDEISFKDKPK 199
           +QSPVTSHIKVFMITPDND+EISFKDKPK
Sbjct: 1   MQSPVTSHIKVFMITPDNDEEISFKDKPK 29



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.322    0.140    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,840,706
Number of Sequences: 1026957
Number of extensions: 4899148
Number of successful extensions: 11983
Number of sequences better than 1.0e-02: 6
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11975
Number of HSP's gapped (non-prelim): 6
length of query: 200
length of database: 324,149,939
effective HSP length: 115
effective length of query: 85
effective length of database: 206,049,884
effective search space: 17514240140
effective search space used: 17514240140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 94 (40.8 bits)