BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644896|ref|NP_207066.1| hypothetical protein
[Helicobacter pylori 26695]
         (80 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207066.1|  (NC_000915) hypothetical protein [Helicoba...   163  4e-40
ref|NP_222974.1|  (NC_000921) putative [Helicobacter pylori ...   157  3e-38
ref|NP_281646.1|  (NC_002163) hypothetical protein Cj0459c [...    59  2e-08

>ref|NP_207066.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64553 hypothetical protein HP0268 - Helicobacter pylori (strain 26695)
 gb|AAD07344.1| (AE000546) H. pylori predicted coding region HP0268 [Helicobacter
          pylori 26695]
          Length = 80

 Score =  163 bits (412), Expect = 4e-40
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MKLVLAKNTRKSDAKSVELEDLYHEFSEDKRSIFYFAPTNAHKDMLKAVDFFKEKGHTAY 60
          MKLVLAKNTRKSDAKSVELEDLYHEFSEDKRSIFYFAPTNAHKDMLKAVDFFKEKGHTAY
Sbjct: 1  MKLVLAKNTRKSDAKSVELEDLYHEFSEDKRSIFYFAPTNAHKDMLKAVDFFKEKGHTAY 60

Query: 61 LDEVRVSTDEKDFLYELHII 80
          LDEVRVSTDEKDFLYELHII
Sbjct: 61 LDEVRVSTDEKDFLYELHII 80



>ref|NP_222974.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||D71953 hypothetical protein jhp0253 - Helicobacter pylori (strain J99)
 gb|AAD05845.1| (AE001463) putative [Helicobacter pylori J99]
          Length = 80

 Score =  157 bits (396), Expect = 3e-38
 Identities = 77/80 (96%), Positives = 79/80 (98%)

Query: 1  MKLVLAKNTRKSDAKSVELEDLYHEFSEDKRSIFYFAPTNAHKDMLKAVDFFKEKGHTAY 60
          MKLVLAKNTRKSDAKSVELEDLY +F+EDKRSIFYFAPTNAHKDMLKAVDFFKEKGHTAY
Sbjct: 1  MKLVLAKNTRKSDAKSVELEDLYKKFNEDKRSIFYFAPTNAHKDMLKAVDFFKEKGHTAY 60

Query: 61 LDEVRVSTDEKDFLYELHII 80
          LDEVRVSTDEKDFLYELHII
Sbjct: 61 LDEVRVSTDEKDFLYELHII 80



>ref|NP_281646.1| (NC_002163) hypothetical protein Cj0459c [Campylobacter jejuni]
 pir||F81390 hypothetical protein Cj0459c [imported] - Campylobacter jejuni
          (strain NCTC 11168)
 emb|CAB75097.1| (AL139075) hypothetical protein Cj0459c [Campylobacter jejuni]
          Length = 88

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 26/80 (32%), Positives = 45/80 (55%)

Query: 1  MKLVLAKNTRKSDAKSVELEDLYHEFSEDKRSIFYFAPTNAHKDMLKAVDFFKEKGHTAY 60
          M+L LA+       K++ LE +     ++ +  FYF   N HK ++  V+ F++KG + Y
Sbjct: 9  MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQLIALVNHFEKKGVSIY 68

Query: 61 LDEVRVSTDEKDFLYELHII 80
             V+   D+ DF+YE+HI+
Sbjct: 69 HRTVKYGLDDNDFMYEVHIL 88



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,313,041
Number of Sequences: 1026957
Number of extensions: 1605747
Number of successful extensions: 4139
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4136
Number of HSP's gapped (non-prelim): 3
length of query: 80
length of database: 324,149,939
effective HSP length: 56
effective length of query: 24
effective length of database: 266,640,347
effective search space: 6399368328
effective search space used: 6399368328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)