BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644898|ref|NP_207068.1| hypothetical protein
[Helicobacter pylori 26695]
(162 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207068.1| (NC_000915) hypothetical protein [Helicoba... 330 3e-90
ref|NP_222976.1| (NC_000921) putative [Helicobacter pylori ... 323 6e-88
ref|NP_281644.1| (NC_002163) putative lipoprotein [Campylob... 108 3e-23
ref|NP_604166.1| (NC_003454) Hypothetical lipoprotein [Fuso... 88 4e-17
ref|NP_419123.1| (NC_002696) conserved hypothetical protein... 79 2e-14
ref|NP_662558.1| (NC_002932) conserved hypothetical protein... 75 2e-13
ref|NP_359756.1| (NC_003103) unknown [Rickettsia conorii] >... 74 8e-13
ref|NP_220483.1| (NC_000963) unknown [Rickettsia prowazekii... 73 1e-12
ref|NP_214393.1| (NC_000918) putative protein [Aquifex aeol... 54 6e-07
ref|NP_540425.1| (NC_003317) putative lipoprotein [Brucella... 50 9e-06
ref|NP_108400.1| (NC_002678) hypothetical protein [Mesorhiz... 50 1e-05
ref|NP_542008.1| (NC_003318) putative lipoprotein [Brucella... 45 4e-04
>ref|NP_207068.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64553 hypothetical protein HP0270 - Helicobacter pylori (strain 26695)
gb|AAD07345.1| (AE000546) H. pylori predicted coding region HP0270 [Helicobacter
pylori 26695]
Length = 162
Score = 330 bits (847), Expect = 3e-90
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MIGFAYLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKE 60
MIGFAYLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKE
Sbjct: 1 MIGFAYLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKE 60
Query: 61 GCDVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPFSE 120
GCDVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPFSE
Sbjct: 61 GCDVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPFSE 120
Query: 121 VYYYMLESVIIPKEWELSRAKEYLKTRMDSVGFEEPQRGLGA 162
VYYYMLESVIIPKEWELSRAKEYLKTRMDSVGFEEPQRGLGA
Sbjct: 121 VYYYMLESVIIPKEWELSRAKEYLKTRMDSVGFEEPQRGLGA 162
>ref|NP_222976.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71953 hypothetical protein jhp0255 - Helicobacter pylori (strain J99)
gb|AAD05834.1| (AE001463) putative [Helicobacter pylori J99]
Length = 217
Score = 323 bits (827), Expect = 6e-88
Identities = 159/162 (98%), Positives = 160/162 (98%)
Query: 1 MIGFAYLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKE 60
MIGFAYLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKE
Sbjct: 56 MIGFAYLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKE 115
Query: 61 GCDVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPFSE 120
GCDVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPFSE
Sbjct: 116 GCDVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPFSE 175
Query: 121 VYYYMLESVIIPKEWELSRAKEYLKTRMDSVGFEEPQRGLGA 162
V YYMLESVIIPKEWELS+AKEYLKTRMDSVGFEE QRGLGA
Sbjct: 176 VRYYMLESVIIPKEWELSKAKEYLKTRMDSVGFEESQRGLGA 217
>ref|NP_281644.1| (NC_002163) putative lipoprotein [Campylobacter jejuni]
pir||D81390 probable lipoprotein Cj0457c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75095.1| (AL139075) putative lipoprotein [Campylobacter jejuni]
Length = 209
Score = 108 bits (269), Expect = 3e-23
Identities = 54/152 (35%), Positives = 82/152 (53%), Gaps = 1/152 (0%)
Query: 4 FAYLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKEGCD 63
F + R + YV+ S H DG A + + FG +RGS+ +G L K L++ D
Sbjct: 55 FRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSALRAAFKVLEQNDD 114
Query: 64 VAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPFSEVYY 123
+ ITPDGP+GP HSI+DG I LAQK + I W+ +WD+ +PKPFS++ Y
Sbjct: 115 IVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWKFKSWDKMILPKPFSKITY 174
Query: 124 YMLESVIIPKEWELSRAKEYLKTRMDSVGFEE 155
+ E + I + +AKE+L + D + +
Sbjct: 175 SLSEPLDI-LSLDKEKAKEFLMKQFDKISLAD 205
>ref|NP_604166.1| (NC_003454) Hypothetical lipoprotein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gb|AAL95465.1| (AE010632) Hypothetical lipoprotein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 209
Score = 87.8 bits (216), Expect = 4e-17
Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 23 DGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKEGCDVAITPDGPKGPRHSIADGV 82
DG + + E G+ +RGSS K + I LK LK+G + DGPKGP+ G+
Sbjct: 74 DGELISVPLEKMGYILVRGSSDKNQISSTISLLKYLKKGYSIGTPLDGPKGPKEKPKKGL 133
Query: 83 IALAQKSGVGISACRVVCKNAWRL-NTWDQFEIPKPFSEVYYYMLESVIIPKEWELSRAK 141
+ L+QK+ V + + W L TWDQFEIPKPFS+V ++ E ++I + +L +
Sbjct: 134 LYLSQKTSVPLVPVGISYSKKWILKKTWDQFEIPKPFSKVKIFLGEPILIDDDEDLDKYT 193
Query: 142 EYLKTRMDSV 151
E +K ++S+
Sbjct: 194 EIVKNGINSL 203
>ref|NP_419123.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK22291.1| (AE005704) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 237
Score = 78.6 bits (192), Expect = 2e-14
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 11 KPSVYVIASQHFDGSIAAGLFESFGFKNIRGSS--------KKGGVKVLIEGLKRLKEGC 62
KP + V+ SQ DG A + G +IRGSS KGG + + +K +K+G
Sbjct: 74 KPEIRVLVSQSRDGEFIARVIARLGLPSIRGSSLKKTDTAKNKGGEQAFRDMVKWVKDGG 133
Query: 63 DVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPFSE 120
+AITPDGP+GP + G +ALA+ SG + V RL TWD+ IP PF++
Sbjct: 134 AMAITPDGPRGPVEVMQKGAVALARVSGAPVLFVGVAVNPCIRLKTWDRTIIPLPFAK 191
>ref|NP_662558.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM72900.1| (AE012922) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 209
Score = 75.5 bits (184), Expect = 2e-13
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 11 KPSVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLK-RLKEGCDVAITPD 69
K + + S DG I + + GF IRGSS +G +V+ G+ L G A+TPD
Sbjct: 67 KREISAVVSLSGDGQILSDTLDRLGFHLIRGSSSRGK-EVVRRGIGVALSNGGVAAVTPD 125
Query: 70 GPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPFSEV 121
GP+GP H G + LA + + + NA RL +WD+FEIP PFS V
Sbjct: 126 GPRGPHHRFKYGTLRLAAQHRTPVVFAEISYDNARRLKSWDRFEIPLPFSRV 177
>ref|NP_359756.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL02657.1| (AE008579) unknown [Rickettsia conorii]
Length = 218
Score = 73.6 bits (179), Expect = 8e-13
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 13 SVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKEGCDVAITPDGPK 72
++Y + S H DG I L FG + I GS+ K + L + +L +G ++ +TPDGPK
Sbjct: 76 NIYALISPHLDGKILNDLVGKFGCRVIVGSTNKNPIGALRNIIGKLSQGANIIVTPDGPK 135
Query: 73 GPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPFSEVYYYMLESVIIP 132
GP + + G+ +A + + +RL +WD+ IP PF + +I+
Sbjct: 136 GPVYKVNSGITEIAYRYNTKLITIVSSTSRCFRLKSWDKLIIPLPFGTI------KIIVG 189
Query: 133 KEWELSRAK 141
EL+ K
Sbjct: 190 SPLELTNDK 198
>ref|NP_220483.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZE57|Y090_RICPR Hypothetical protein RP090
pir||A71718 hypothetical protein RP090 - Rickettsia prowazekii
emb|CAA14560.1| (AJ235270) unknown [Rickettsia prowazekii]
Length = 218
Score = 72.8 bits (177), Expect = 1e-12
Identities = 35/109 (32%), Positives = 56/109 (51%)
Query: 13 SVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKEGCDVAITPDGPK 72
+VY + S H DG I L FG + I GS+ K + L + +L +G ++ +TPDGPK
Sbjct: 76 NVYALISPHLDGKILNALVGKFGCQVIVGSTNKNSIVALRNIIGKLSQGANIIVTPDGPK 135
Query: 73 GPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPFSEV 121
GP + + G+ +A + + +RL +WD+ IP PF +
Sbjct: 136 GPVYKVNSGITEIAYRYNKKLIPIVSSTSRCFRLKSWDKLIIPIPFGTI 184
>ref|NP_214393.1| (NC_000918) putative protein [Aquifex aeolicus]
pir||D70474 hypothetical protein aq_2031 - Aquifex aeolicus
gb|AAC07796.1| (AE000769) putative protein [Aquifex aeolicus]
Length = 133
Score = 53.9 bits (128), Expect = 6e-07
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 14 VYVIASQHFDGSIAAGLFESFGFKNIRGSS-----KKGGVKVLIEGLKRLKEGCDVAITP 68
+ V+ S+ DG IAA L + GF+ +RGS+ KKGG ++ ++ LKEG +VAIT
Sbjct: 65 IVVLVSRFRDGEIAARLLKELGFEVVRGSTEEGKAKKGGRSATLKLIEYLKEGKNVAITV 124
Query: 69 DGPKGP 74
DGPK P
Sbjct: 125 DGPKVP 130
>ref|NP_540425.1| (NC_003317) putative lipoprotein [Brucella melitensis]
gb|AAL52689.1| (AE009587) putative lipoprotein [Brucella melitensis]
Length = 225
Score = 50.1 bits (118), Expect = 9e-06
Identities = 39/145 (26%), Positives = 63/145 (42%), Gaps = 7/145 (4%)
Query: 5 AYLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSS---KKG---GVKVLIEGLKRL 58
A+ R + S+ DG + A + G + IRGS +KG G L + L L
Sbjct: 62 AFARPPEKKFVAAVSKSRDGELVAQMLGKLGIRAIRGSGAGQRKGNRQGGAALRQMLYAL 121
Query: 59 KEGCDVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPF 118
+ G + + + K +GVIALA+ SG I LN+WD+ E+P PF
Sbjct: 122 RNGESIVMAAETNKKV-FRCGEGVIALARLSGCPIYPASARTSFTRTLNSWDRAELPMPF 180
Query: 119 SEVYYYMLESVIIPKEWELSRAKEY 143
+ E + +P++ ++Y
Sbjct: 181 GRHSVVIGEPIFVPRDASDEELEQY 205
>ref|NP_108400.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB53861.1| (AP003013) hypothetical protein [Mesorhizobium loti]
Length = 233
Score = 49.7 bits (117), Expect = 1e-05
Identities = 39/123 (31%), Positives = 56/123 (44%), Gaps = 10/123 (8%)
Query: 5 AYLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSS--------KKGGVKVLIEGLK 56
AY +KP V ++ S+ D + A + E FG + +RGS KGG K LI K
Sbjct: 64 AYYPKRKPLVAMV-SRSADAELNALMLEKFGIEAVRGSGGRDNARHLDKGGAKALIALKK 122
Query: 57 RLKEGCDVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWRL-NTWDQFEIP 115
L G +VA+ D P G G++ LA+ SG + + L +WD+ I
Sbjct: 123 SLTAGKNVAMIADIPHGTPRDAGLGIVLLARLSGRPLLPVAIATSRRKVLEKSWDKTTIN 182
Query: 116 KPF 118
PF
Sbjct: 183 LPF 185
>ref|NP_542008.1| (NC_003318) putative lipoprotein [Brucella melitensis]
gb|AAL54272.1| (AE009735) putative lipoprotein [Brucella melitensis]
Length = 247
Score = 44.7 bits (104), Expect = 4e-04
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 6 YLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSS--------KKGGVKVLIEGLKR 57
+LR + + + S+ D + A + E G +RGS +KGG + L+
Sbjct: 78 FLRPKGLELVAMFSRSADAELNARVAEKLGLLTVRGSGGRGTRANPEKGGARALLTLKNA 137
Query: 58 LKEGCDVAITPDGPKGPRHSIADGVIALAQKSGVG-ISACRVVCKNAWRLNTWDQFEIPK 116
L++G ++ D G +G+I LA+ SG I +N TWD+ IP
Sbjct: 138 LRKGQSTSMIADIAHGKAREAGEGIILLAKLSGRPIIPLAYAFSRNHVLEKTWDKTTIPL 197
Query: 117 PF 118
PF
Sbjct: 198 PF 199
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.139 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,464,970
Number of Sequences: 1026957
Number of extensions: 4368743
Number of successful extensions: 9743
Number of sequences better than 1.0e-02: 12
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9726
Number of HSP's gapped (non-prelim): 12
length of query: 162
length of database: 324,149,939
effective HSP length: 111
effective length of query: 51
effective length of database: 210,157,712
effective search space: 10718043312
effective search space used: 10718043312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 92 (40.0 bits)