BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644899|ref|NP_207069.1| hypothetical protein
[Helicobacter pylori 26695]
         (327 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207069.1|  (NC_000915) hypothetical protein [Helicoba...   645  0.0
ref|NP_222977.1|  (NC_000921) putative [Helicobacter pylori ...   631  e-180

>ref|NP_207069.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64553 hypothetical protein HP0271 - Helicobacter pylori (strain 26695)
 gb|AAD07346.1| (AE000546) H. pylori predicted coding region HP0271 [Helicobacter
           pylori 26695]
          Length = 327

 Score =  645 bits (1664), Expect = 0.0
 Identities = 327/327 (100%), Positives = 327/327 (100%)

Query: 1   MLKGLKKAFKERFCSQVYISFNVDHNLLSTQVIRIKNDRIKEKFFKTFETKVETKNGEVP 60
           MLKGLKKAFKERFCSQVYISFNVDHNLLSTQVIRIKNDRIKEKFFKTFETKVETKNGEVP
Sbjct: 1   MLKGLKKAFKERFCSQVYISFNVDHNLLSTQVIRIKNDRIKEKFFKTFETKVETKNGEVP 60

Query: 61  IQALKIARTYSQKYPYTYFSAMSKAKEVLCEKQAFEQIKQENQDYHACEVNQKYCVYVES 120
           IQALKIARTYSQKYPYTYFSAMSKAKEVLCEKQAFEQIKQENQDYHACEVNQKYCVYVES
Sbjct: 61  IQALKIARTYSQKYPYTYFSAMSKAKEVLCEKQAFEQIKQENQDYHACEVNQKYCVYVES 120

Query: 121 KDFLKDFKRFKIQDVDFLFSPFSLIYDFVRDNLENKPLLYLLLERSRFYFLIADKKEIFL 180
           KDFLKDFKRFKIQDVDFLFSPFSLIYDFVRDNLENKPLLYLLLERSRFYFLIADKKEIFL
Sbjct: 121 KDFLKDFKRFKIQDVDFLFSPFSLIYDFVRDNLENKPLLYLLLERSRFYFLIADKKEIFL 180

Query: 181 AKSVFLEEQPEEFIESKEEDFMGMDNEAVDLFLSEIQEDIDSLEEAIGLDSSKDNSEKIT 240
           AKSVFLEEQPEEFIESKEEDFMGMDNEAVDLFLSEIQEDIDSLEEAIGLDSSKDNSEKIT
Sbjct: 181 AKSVFLEEQPEEFIESKEEDFMGMDNEAVDLFLSEIQEDIDSLEEAIGLDSSKDNSEKIT 240

Query: 241 EDAYSLIEGMTNIPLIADVLQEGLRGVYHSREIDFVEKVVVLDSCQIHQKALMHLQETLM 300
           EDAYSLIEGMTNIPLIADVLQEGLRGVYHSREIDFVEKVVVLDSCQIHQKALMHLQETLM
Sbjct: 241 EDAYSLIEGMTNIPLIADVLQEGLRGVYHSREIDFVEKVVVLDSCQIHQKALMHLQETLM 300

Query: 301 IEVDRLDFSLVERLNILARMENEKHAF 327
           IEVDRLDFSLVERLNILARMENEKHAF
Sbjct: 301 IEVDRLDFSLVERLNILARMENEKHAF 327



>ref|NP_222977.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71953 hypothetical protein jhp0256 - Helicobacter pylori (strain J99)
 gb|AAD05835.1| (AE001463) putative [Helicobacter pylori J99]
          Length = 327

 Score =  631 bits (1627), Expect = e-180
 Identities = 319/327 (97%), Positives = 322/327 (97%)

Query: 1   MLKGLKKAFKERFCSQVYISFNVDHNLLSTQVIRIKNDRIKEKFFKTFETKVETKNGEVP 60
           MLKGLKKAFKERFCSQVYISFNVDHNLLS QV+R+KN RIKEKFFKTFETKVETKNGEVP
Sbjct: 1   MLKGLKKAFKERFCSQVYISFNVDHNLLSAQVLRVKNHRIKEKFFKTFETKVETKNGEVP 60

Query: 61  IQALKIARTYSQKYPYTYFSAMSKAKEVLCEKQAFEQIKQENQDYHACEVNQKYCVYVES 120
           IQALKIARTYSQKYPYTYFSAMSKAKEVLCEKQAFEQIKQENQDY ACEVNQKYCVYVES
Sbjct: 61  IQALKIARTYSQKYPYTYFSAMSKAKEVLCEKQAFEQIKQENQDYQACEVNQKYCVYVES 120

Query: 121 KDFLKDFKRFKIQDVDFLFSPFSLIYDFVRDNLENKPLLYLLLERSRFYFLIADKKEIFL 180
           KDFLKDFKRFKIQDVDFLFSPFSLIYDFVRDNLENKPLLYLLLERSRFYFLIADKKEIFL
Sbjct: 121 KDFLKDFKRFKIQDVDFLFSPFSLIYDFVRDNLENKPLLYLLLERSRFYFLIADKKEIFL 180

Query: 181 AKSVFLEEQPEEFIESKEEDFMGMDNEAVDLFLSEIQEDIDSLEEAIGLDSSKDNSEKIT 240
           AKSVFLEEQPEEFIESKEED MGMDNEAVDLFLSEIQEDIDSLEEAIGLDSSKDNSEKIT
Sbjct: 181 AKSVFLEEQPEEFIESKEEDSMGMDNEAVDLFLSEIQEDIDSLEEAIGLDSSKDNSEKIT 240

Query: 241 EDAYSLIEGMTNIPLIADVLQEGLRGVYHSREIDFVEKVVVLDSCQIHQKALMHLQETLM 300
           EDAYSLIEGMTNIPLIADVLQEGLRGVYHSREIDFVEKVVVLDSCQIH KALMHLQETLM
Sbjct: 241 EDAYSLIEGMTNIPLIADVLQEGLRGVYHSREIDFVEKVVVLDSCQIHHKALMHLQETLM 300

Query: 301 IEVDRLDFSLVERLNILARMENEKHAF 327
           IEVDRLDFSLVERLN+LARMENEKHAF
Sbjct: 301 IEVDRLDFSLVERLNVLARMENEKHAF 327



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.321    0.138    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,315,320
Number of Sequences: 1026957
Number of extensions: 7645541
Number of successful extensions: 23407
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23405
Number of HSP's gapped (non-prelim): 2
length of query: 327
length of database: 324,149,939
effective HSP length: 121
effective length of query: 206
effective length of database: 199,888,142
effective search space: 41176957252
effective search space used: 41176957252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 97 (42.0 bits)