BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644900|ref|NP_207070.1| hypothetical protein
[Helicobacter pylori 26695]
         (177 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207070.1|  (NC_000915) hypothetical protein [Helicoba...   352  8e-97
ref|NP_222978.1|  (NC_000921) putative [Helicobacter pylori ...   345  1e-94

>ref|NP_207070.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64553 hypothetical protein HP0272 - Helicobacter pylori (strain 26695)
 gb|AAD07347.1| (AE000546) H. pylori predicted coding region HP0272 [Helicobacter
           pylori 26695]
          Length = 177

 Score =  352 bits (904), Expect = 8e-97
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MRFSYIEPRAKYLISKLSKIWVFYIFLSFVVIGGLVWFMHNAIKSTQDNASSLTIQERLY 60
           MRFSYIEPRAKYLISKLSKIWVFYIFLSFVVIGGLVWFMHNAIKSTQDNASSLTIQERLY
Sbjct: 1   MRFSYIEPRAKYLISKLSKIWVFYIFLSFVVIGGLVWFMHNAIKSTQDNASSLTIQERLY 60

Query: 61  RHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLLNIVPDSITINSIEIDQQSVVV 120
           RHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLLNIVPDSITINSIEIDQQSVVV
Sbjct: 61  RHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLLNIVPDSITINSIEIDQQSVVV 120

Query: 121 SGKTPSKEAFYFLFQNKLNPMFDYSRAEFFPLSDGWFNFVSTNFSNSLLIKNPESIK 177
           SGKTPSKEAFYFLFQNKLNPMFDYSRAEFFPLSDGWFNFVSTNFSNSLLIKNPESIK
Sbjct: 121 SGKTPSKEAFYFLFQNKLNPMFDYSRAEFFPLSDGWFNFVSTNFSNSLLIKNPESIK 177



>ref|NP_222978.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71953 hypothetical protein jhp0257 - Helicobacter pylori (strain J99)
 gb|AAD05836.1| (AE001463) putative [Helicobacter pylori J99]
          Length = 177

 Score =  345 bits (885), Expect = 1e-94
 Identities = 173/177 (97%), Positives = 174/177 (97%)

Query: 1   MRFSYIEPRAKYLISKLSKIWVFYIFLSFVVIGGLVWFMHNAIKSTQDNASSLTIQERLY 60
           MRFSYIEPRAKYLISKLSKIWVFYIFLSFV+IGGLVWFMHNAIK  QDNASSLTIQERLY
Sbjct: 1   MRFSYIEPRAKYLISKLSKIWVFYIFLSFVLIGGLVWFMHNAIKRAQDNASSLTIQERLY 60

Query: 61  RHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLLNIVPDSITINSIEIDQQSVVV 120
           RHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLLNIVPD ITINSIEIDQQSVVV
Sbjct: 61  RHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLLNIVPDLITINSIEIDQQSVVV 120

Query: 121 SGKTPSKEAFYFLFQNKLNPMFDYSRAEFFPLSDGWFNFVSTNFSNSLLIKNPESIK 177
           SGKTPSKEAFYFLFQNKLNPMFDYSRAEFFPLSDGWFNFVSTNFSNSLLIKNPESIK
Sbjct: 121 SGKTPSKEAFYFLFQNKLNPMFDYSRAEFFPLSDGWFNFVSTNFSNSLLIKNPESIK 177



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.322    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,637,431
Number of Sequences: 1026957
Number of extensions: 3759501
Number of successful extensions: 13967
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13965
Number of HSP's gapped (non-prelim): 2
length of query: 177
length of database: 324,149,939
effective HSP length: 113
effective length of query: 64
effective length of database: 208,103,798
effective search space: 13318643072
effective search space used: 13318643072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 93 (40.4 bits)