BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644901|ref|NP_207071.1| hypothetical protein
[Helicobacter pylori 26695]
         (179 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207071.1|  (NC_000915) hypothetical protein [Helicoba...   354  3e-97
ref|NP_222979.1|  (NC_000921) putative [Helicobacter pylori ...   343  7e-94

>ref|NP_207071.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64554 hypothetical protein HP0273 - Helicobacter pylori (strain 26695)
 gb|AAD07348.1| (AE000546) H. pylori predicted coding region HP0273 [Helicobacter
           pylori 26695]
          Length = 179

 Score =  354 bits (908), Expect = 3e-97
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MKPLHFSHLDREQSGDVGFIIKNLVFLGVFSLLGWLNTEYFLWPSMLELKKILLEENRKK 60
           MKPLHFSHLDREQSGDVGFIIKNLVFLGVFSLLGWLNTEYFLWPSMLELKKILLEENRKK
Sbjct: 1   MKPLHFSHLDREQSGDVGFIIKNLVFLGVFSLLGWLNTEYFLWPSMLELKKILLEENRKK 60

Query: 61  SVLEYAQRHFETALTNYRNQKETSESLLKIFNDEESKRILEKILKKCFDAYKIKPLLSQN 120
           SVLEYAQRHFETALTNYRNQKETSESLLKIFNDEESKRILEKILKKCFDAYKIKPLLSQN
Sbjct: 61  SVLEYAQRHFETALTNYRNQKETSESLLKIFNDEESKRILEKILKKCFDAYKIKPLLSQN 120

Query: 121 SLQKTQFFIMARASELEKTYLFFTLINKYLPSAQSQLPLKISKDDEGLLVQFGVSIDLQ 179
           SLQKTQFFIMARASELEKTYLFFTLINKYLPSAQSQLPLKISKDDEGLLVQFGVSIDLQ
Sbjct: 121 SLQKTQFFIMARASELEKTYLFFTLINKYLPSAQSQLPLKISKDDEGLLVQFGVSIDLQ 179



>ref|NP_222979.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71954 hypothetical protein jhp0258 - Helicobacter pylori (strain J99)
 gb|AAD05837.1| (AE001463) putative [Helicobacter pylori J99]
          Length = 179

 Score =  343 bits (879), Expect = 7e-94
 Identities = 172/179 (96%), Positives = 175/179 (97%)

Query: 1   MKPLHFSHLDREQSGDVGFIIKNLVFLGVFSLLGWLNTEYFLWPSMLELKKILLEENRKK 60
           MKPLHFSHLDREQSGDVGFIIKNL+FLGVFSLLGWLNTEYFLWPSMLELKKILLEENRKK
Sbjct: 1   MKPLHFSHLDREQSGDVGFIIKNLIFLGVFSLLGWLNTEYFLWPSMLELKKILLEENRKK 60

Query: 61  SVLEYAQRHFETALTNYRNQKETSESLLKIFNDEESKRILEKILKKCFDAYKIKPLLSQN 120
           SVLEYAQRHFETAL NYRNQKETSESLLKIFNDEES+RILEKILKKCFDAYKIKPLLSQN
Sbjct: 61  SVLEYAQRHFETALANYRNQKETSESLLKIFNDEESRRILEKILKKCFDAYKIKPLLSQN 120

Query: 121 SLQKTQFFIMARASELEKTYLFFTLINKYLPSAQSQLPLKISKDDEGLLVQFGVSIDLQ 179
             QKTQFFIMARASELEKTYLFFTLINKYLPSAQSQLPLKISKD +GLLVQFGVSIDLQ
Sbjct: 121 PSQKTQFFIMARASELEKTYLFFTLINKYLPSAQSQLPLKISKDSDGLLVQFGVSIDLQ 179



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.321    0.138    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,044,523
Number of Sequences: 1026957
Number of extensions: 3751196
Number of successful extensions: 14733
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14731
Number of HSP's gapped (non-prelim): 2
length of query: 179
length of database: 324,149,939
effective HSP length: 113
effective length of query: 66
effective length of database: 208,103,798
effective search space: 13734850668
effective search space used: 13734850668
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 93 (40.4 bits)