BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644902|ref|NP_207072.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(132 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207072.1| (NC_000915) conserved hypothetical protein... 277 2e-74
ref|NP_222980.1| (NC_000921) putative [Helicobacter pylori ... 263 2e-70
ref|NP_281683.1| (NC_002163) hypothetical protein Cj0496 [C... 124 2e-28
ref|NP_579462.1| (NC_003413) hypothetical protein [Pyrococc... 56 8e-08
ref|NP_247645.1| (NC_000909) conserved hypothetical protein... 54 2e-07
ref|NP_143535.1| (NC_000961) hypothetical protein [Pyrococc... 52 1e-06
ref|NP_126172.1| (NC_000868) hypothetical protein [Pyrococc... 50 6e-06
ref|NP_616330.1| (NC_003552) conserved hypothetical protein... 48 2e-05
ref|NP_143693.1| (NC_000961) hypothetical protein [Pyrococc... 46 6e-05
ref|NP_634398.1| (NC_003901) conserved protein [Methanosarc... 46 8e-05
ref|NP_071131.1| (NC_000917) conserved hypothetical protein... 45 1e-04
ref|NP_579627.1| (NC_003413) hypothetical protein [Pyrococc... 45 2e-04
ref|NP_126122.1| (NC_000868) hypothetical protein [Pyrococc... 44 2e-04
ref|NP_560409.1| (NC_003364) conserved hypothetical protein... 42 0.001
>ref|NP_207072.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|P56132|Y274_HELPY Hypothetical protein HP0274
pir||B64554 conserved hypothetical protein HP0274 - Helicobacter pylori
(strain 26695)
gb|AAD07338.1| (AE000546) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 132
Score = 277 bits (708), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MQDFDFSFNPKACEGCGAKCCVGESGYIFLNIQEMQQISAFLKLELEEFSQKYVKKVGYK 60
MQDFDFSFNPKACEGCGAKCCVGESGYIFLNIQEMQQISAFLKLELEEFSQKYVKKVGYK
Sbjct: 1 MQDFDFSFNPKACEGCGAKCCVGESGYIFLNIQEMQQISAFLKLELEEFSQKYVKKVGYK 60
Query: 61 FSLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWEGVKTFSKEQKEAFCQSCP 120
FSLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWEGVKTFSKEQKEAFCQSCP
Sbjct: 61 FSLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWEGVKTFSKEQKEAFCQSCP 120
Query: 121 GITQKTKETKVR 132
GITQKTKETKVR
Sbjct: 121 GITQKTKETKVR 132
>ref|NP_222980.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZMG1|Y274_HELPJ Hypothetical protein JHP0259
pir||B71954 hypothetical protein jhp0259 - Helicobacter pylori (strain J99)
gb|AAD05838.1| (AE001463) putative [Helicobacter pylori J99]
Length = 132
Score = 263 bits (673), Expect = 2e-70
Identities = 125/132 (94%), Positives = 128/132 (96%)
Query: 1 MQDFDFSFNPKACEGCGAKCCVGESGYIFLNIQEMQQISAFLKLELEEFSQKYVKKVGYK 60
M+DFDFSFN KACEGCGAKCCVGESGYIF+ IQEMQQISAFLKLELEEFSQKYVKKVGYK
Sbjct: 1 MRDFDFSFNHKACEGCGAKCCVGESGYIFVTIQEMQQISAFLKLELEEFSQKYVKKVGYK 60
Query: 61 FSLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWEGVKTFSKEQKEAFCQSCP 120
FSLLEKDAK+LGLACVFLDLETKKCQIYS RPKQCQTFPFWE VKTFSKEQKEAFCQSCP
Sbjct: 61 FSLLEKDAKDLGLACVFLDLETKKCQIYSARPKQCQTFPFWESVKTFSKEQKEAFCQSCP 120
Query: 121 GITQKTKETKVR 132
GITQKTKETKVR
Sbjct: 121 GITQKTKETKVR 132
>ref|NP_281683.1| (NC_002163) hypothetical protein Cj0496 [Campylobacter jejuni]
pir||C81395 hypothetical protein Cj0496 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75134.1| (AL139075) hypothetical protein Cj0496 [Campylobacter jejuni]
Length = 124
Score = 124 bits (311), Expect = 2e-28
Identities = 54/118 (45%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Query: 2 QDFDFSFNPKACEGCGAKCCVGESGYIFLNIQEMQQISAFLKLELEEFSQKYVKKVGYKF 61
++F ++F+ ACE CG KCC GESG IF + +E++ + L LE +EF++KY++KVG+K
Sbjct: 5 KNFSYAFDENACEKCGGKCCTGESGNIFASKEELEVLRKHLNLESKEFAEKYLRKVGFKM 64
Query: 62 SLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWEGVKTFSKEQKEAFCQSC 119
S E + ++ G AC+F D + + C IY RPKQC+TFPFWE KT KE ++ C
Sbjct: 65 SFKEVECED-GFACIFFDTQKRNCSIYDFRPKQCRTFPFWEYFKTHQKELEKECIGIC 121
>ref|NP_579462.1| (NC_003413) hypothetical protein [Pyrococcus furiosus DSM 3638]
gb|AAL81857.1| (AE010270) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 183
Score = 55.8 bits (133), Expect = 8e-08
Identities = 47/129 (36%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 5 DFSFNPKACEGCGAKCCVGESGYIFLNIQEMQQISAFLKLELEEFSQKYVKKV--GYKFS 62
D F K E CG KCC+ I L +++Q+I + L E EE+ Y K G KF
Sbjct: 20 DDKFRFKCIEDCG-KCCIYNE--IPLREEDIQKILS-LGYE-EEYFVDYTKMFYRGPKFL 74
Query: 63 LLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWEGVKTFSKEQKEAFCQS---C 119
+ ACVFLD ETKKC+IY RP C+ +PF V +++ E + + C
Sbjct: 75 GYGMKKRPFDDACVFLDPETKKCRIYEHRPVACRIYPF---VLVKHEKKLEIYVKEDPRC 131
Query: 120 PGITQKTKE 128
PGI E
Sbjct: 132 PGINSPDGE 140
>ref|NP_247645.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q58075|Y661_METJA Hypothetical protein MJ0661
pir||E64382 hypothetical protein MJ0661 - Methanococcus jannaschii
gb|AAB98654.1| (U67513) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 182
Score = 54.3 bits (129), Expect = 2e-07
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 11/99 (11%)
Query: 4 FDFSFNPKA--CEGCGAKCCVGESGYIFLNIQEMQQISAFLKLELEEFSQKYVKKVGYKF 61
FD N A C CG CC + + +++ +I+ +LK+ +E ++YV+ F
Sbjct: 17 FDVYLNGIAYHCIKCGF-CCDAPT----VTKKDLAKIAGYLKIPFDEVLKRYVRF----F 67
Query: 62 SLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPF 100
+ + KE+G C+FLD +TKKC+IY VRP C+ P+
Sbjct: 68 NGYIGELKEVGGKCIFLDKKTKKCKIYKVRPLICRLRPY 106
>ref|NP_143535.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||F71176 hypothetical protein PH1693 - Pyrococcus horikoshii
Length = 141
Score = 51.6 bits (122), Expect = 1e-06
Identities = 43/123 (34%), Positives = 62/123 (49%), Gaps = 16/123 (13%)
Query: 5 DFSFNPKACEGCGAKCCVGESGYIFLNIQEMQQISAFLKLELEE-FSQKYVKKV--GYKF 61
DF F K + CG KCC+ I L +++++I KL +E + + K V G KF
Sbjct: 22 DFRF--KCLDNCG-KCCIEND--IPLREEDIERIK---KLGYDEDYFVDFTKMVYRGPKF 73
Query: 62 SLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWEGVKTFSKEQKEAFCQS--C 119
+ ACVFLD ETKKC+IY RP C+ +PF ++ E + ++ C
Sbjct: 74 LGYTLKKRPFDNACVFLDPETKKCRIYEHRPLACRLYPF---ALVRHGDELEIYVRNVDC 130
Query: 120 PGI 122
PGI
Sbjct: 131 PGI 133
>ref|NP_126172.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||D75165 hypothetical protein PAB0321 - Pyrococcus abyssi (strain Orsay)
emb|CAB49403.1| (AJ248284) hypothetical protein [Pyrococcus abyssi]
Length = 142
Score = 49.7 bits (117), Expect = 6e-06
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 3 DFDFSFNPKACEGCGAKCCVGESGYIFLNIQEMQQISAFLKLELEEFSQKYVKKV--GYK 60
D DF F K + CG CC+ I L +++++I + L + E++ + K V G K
Sbjct: 21 DEDFRF--KCLDNCGL-CCIEND--IPLREEDIERIKS-LGYD-EDYFVDFTKMVYRGPK 73
Query: 61 FSLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWEGVKTFSKEQKEAFCQ--S 118
F + ACVFLD ETK+C+IY RP C+ +PF ++ E + + +
Sbjct: 74 FLGYAMKKRPFDDACVFLDPETKRCRIYEHRPLACRLYPF---ALVKHRDYLEIYVRNVN 130
Query: 119 CPGI 122
CPGI
Sbjct: 131 CPGI 134
>ref|NP_616330.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04810.1| (AE010809) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 286
Score = 47.8 bits (112), Expect = 2e-05
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 20/114 (17%)
Query: 33 QEMQQISAFLKLELEEFSQKYVKKVGYKFSLLEKDAKELGLA--------------CVFL 78
+E+ + + ++ E+ E ++ K F LL +D G C+FL
Sbjct: 119 REIDREISSMQPEISETDEEAFSKPSQLFELLREDIDSQGNIHAYGWMLRRKRNGDCLFL 178
Query: 79 DLETKKCQIYSVRPKQCQTFPFW-EGVKTFSKEQKEAFCQSCPGITQKTKETKV 131
+ +T +C+IY VRP C T+PF+ EG+K ++ E C+ G K + K+
Sbjct: 179 NKDTNRCRIYPVRPMLCSTYPFYIEGLKLYTCE-----CEGFGGHISKEESRKL 227
>ref|NP_143693.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||C71199 hypothetical protein PH1864 - Pyrococcus horikoshii
Length = 170
Score = 46.2 bits (108), Expect = 6e-05
Identities = 37/133 (27%), Positives = 56/133 (41%), Gaps = 28/133 (21%)
Query: 13 CEGCGAKCCVGESGYIFLN-----IQEMQQISAFLKLELEEFSQKYVKKVGYKFSLLEKD 67
C+ C CC G Y+ LN I FL + +E+ ++V V
Sbjct: 19 CKFC-LDCCKGRHVYLTLNDIKRLIDAGYDPQDFLTISIEDGKIRFVLSV---------- 67
Query: 68 AKELGLACVFLDLETKKCQIYSVRPKQCQTFPFW--------EGVKTFSKEQKE---AFC 116
+E L CVF D ET C+++ RP C+ +PF +G K F K +
Sbjct: 68 -REWDLGCVFQDPETGLCKVHPHRPLICRIYPFMVSKKPLGIKGEKKFEINGKSFWLYYD 126
Query: 117 QSCPGITQKTKET 129
++CPGI + +T
Sbjct: 127 ENCPGINDEDGDT 139
>ref|NP_634398.1| (NC_003901) conserved protein [Methanosarcina mazei Goe1]
gb|AAM32070.1| (AE013480) conserved protein [Methanosarcina mazei Goe1]
Length = 280
Score = 45.8 bits (107), Expect = 8e-05
Identities = 19/37 (51%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 75 CVFLDLETKKCQIYSVRPKQCQTFPFW-EGVKTFSKE 110
CVFL+ +T +C+IY VRP C T+PF+ EG+K ++ E
Sbjct: 169 CVFLEKDTNRCRIYPVRPMLCSTYPFYIEGLKLYTCE 205
>ref|NP_071131.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
pir||B69538 conserved hypothetical protein AF2306 - Archaeoglobus fulgidus
gb|AAB88950.1| (AE000945) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 157
Score = 45.4 bits (106), Expect = 1e-04
Identities = 30/93 (32%), Positives = 42/93 (44%), Gaps = 19/93 (20%)
Query: 11 KACEGCGAKCCVGESGYIF---LNIQEMQQISAFLKLELEEFSQKYVKKVGYKFSLLEKD 67
+ C CG KCC+ I L I IS L + EE++ +K+ GY
Sbjct: 6 EVCSRCGGKCCIDAKPPITERRLRILLDSGISLEL-FDFEEYTHPKMKENGY-------- 56
Query: 68 AKELGLACVFLDLETKKCQIYSVRPKQCQTFPF 100
CVF D + KKC I+S++P+ C PF
Sbjct: 57 -------CVFFDEKEKKCLIHSIKPETCVAGPF 82
>ref|NP_579627.1| (NC_003413) hypothetical protein [Pyrococcus furiosus DSM 3638]
gb|AAL82022.1| (AE010284) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 176
Score = 44.7 bits (104), Expect = 2e-04
Identities = 31/127 (24%), Positives = 55/127 (42%), Gaps = 31/127 (24%)
Query: 20 CCVGESGYIFLNIQEMQQI-------SAFLKLELEEFSQKYVKKVGYKFSLLEKDAKELG 72
CC G +++L + +++++ FL +E + ++V V +E
Sbjct: 33 CCRGR--HVYLTVSDIKRLVGSGHDPQKFLTFSIEGGNIRFVLSV-----------REWD 79
Query: 73 LACVFLDLETKKCQIYSVRPKQCQTFPFWEGVKTFSKEQKEA-----------FCQSCPG 121
L C+F D T KC I+ +RP C+ +PF + E +E + +SCPG
Sbjct: 80 LGCIFHDPGTGKCTIHPIRPLICRIYPFMVSKRPLGVEGEEPVQYKGRMLWLYYDESCPG 139
Query: 122 ITQKTKE 128
I + E
Sbjct: 140 INSQEGE 146
>ref|NP_126122.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||B75159 hypothetical protein PAB2060 - Pyrococcus abyssi (strain Orsay)
emb|CAB49353.1| (AJ248284) hypothetical protein [Pyrococcus abyssi]
Length = 165
Score = 44.3 bits (103), Expect = 2e-04
Identities = 33/134 (24%), Positives = 58/134 (42%), Gaps = 32/134 (23%)
Query: 13 CEGCGAKCCVGESGYIFLNIQEMQQI-------SAFLKLELEEFSQKYVKKVGYKFSLLE 65
C+ C CC G +++L +++++++ FL + +E ++V V
Sbjct: 16 CKFC-LDCCKGR--HVYLTLKDIKRLIDAGKDPQEFLTISIEGNKIRFVLSV-------- 64
Query: 66 KDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWEGVKTFSKEQKEA----------- 114
+E L CVF D ET C ++ RP C+ +PF K E ++
Sbjct: 65 ---REWDLGCVFQDPETGLCTVHPHRPLICRIYPFMVSKKPLGVEGEKPIETKDGRFWLY 121
Query: 115 FCQSCPGITQKTKE 128
+ ++CPGI K E
Sbjct: 122 YDENCPGINNKEGE 135
>ref|NP_560409.1| (NC_003364) conserved hypothetical protein [Pyrobaculum aerophilum]
gb|AAL64591.1| (AE009905) conserved hypothetical protein [Pyrobaculum aerophilum]
Length = 137
Score = 42.0 bits (97), Expect = 0.001
Identities = 30/108 (27%), Positives = 50/108 (45%), Gaps = 18/108 (16%)
Query: 43 KLELEEFSQKYVKKVGYKFS--LLEKDA----KELGLACVFLDLETKKCQIYSVRPKQCQ 96
++EL + + GYK +E+D K + CVF D T+KC+IY++RP C+
Sbjct: 25 EMELLAEDIERITSAGYKLEEFAVERDGIYRLKNVDGHCVFYDASTRKCKIYNIRPIGCR 84
Query: 97 TFP-FWEGVK-----------TFSKEQKEAFCQSCPGITQKTKETKVR 132
+P ++G K T SK++ E + K+ K+R
Sbjct: 85 LYPLIYDGEKIEADRTCPTWHTVSKKEIERLAPYVLQFLEDVKKAKIR 132
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,830,457
Number of Sequences: 1026957
Number of extensions: 3031949
Number of successful extensions: 7451
Number of sequences better than 1.0e-02: 14
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7439
Number of HSP's gapped (non-prelim): 14
length of query: 132
length of database: 324,149,939
effective HSP length: 108
effective length of query: 24
effective length of database: 213,238,583
effective search space: 5117725992
effective search space used: 5117725992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 90 (39.3 bits)