BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644904|ref|NP_207074.1| hypothetical protein
[Helicobacter pylori 26695]
         (185 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207074.1|  (NC_000915) hypothetical protein [Helicoba...   368  e-101
ref|NP_222982.1|  (NC_000921) putative [Helicobacter pylori ...   344  3e-94
ref|NP_281685.1|  (NC_002163) indole-3-glycerol phosphate sy...    71  5e-12
ref|NP_623180.1|  (NC_003869) Indole-3-glycerol phosphate sy...    46  2e-04
ref|NP_349757.1|  (NC_003030) Indole-3-glycerol phosphate sy...    42  0.003

>ref|NP_207074.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64554 hypothetical protein HP0276 - Helicobacter pylori (strain 26695)
 gb|AAD07349.1| (AE000546) H. pylori predicted coding region HP0276 [Helicobacter
           pylori 26695]
          Length = 185

 Score =  368 bits (944), Expect = e-101
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MQEIGILENLQKSLALKEGMLSYEMLGKSLSYNPYLPRVIPQTKDCVFVTPDEVLEKLLK 60
           MQEIGILENLQKSLALKEGMLSYEMLGKSLSYNPYLPRVIPQTKDCVFVTPDEVLEKLLK
Sbjct: 1   MQEIGILENLQKSLALKEGMLSYEMLGKSLSYNPYLPRVIPQTKDCVFVTPDEVLEKLLK 60

Query: 61  ENTHTDCVIVNFKGLYEIGAPSVFNLEVLGLLRRHASSLIVHQDLFISHYQLLESLVQGS 120
           ENTHTDCVIVNFKGLYEIGAPSVFNLEVLGLLRRHASSLIVHQDLFISHYQLLESLVQGS
Sbjct: 61  ENTHTDCVIVNFKGLYEIGAPSVFNLEVLGLLRRHASSLIVHQDLFISHYQLLESLVQGS 120

Query: 121 DGVVLDEELLKEDLKGMVEFSWRLGLSVFVETHKQDYTHLKDLGVLGVLEKVPHSQNQKR 180
           DGVVLDEELLKEDLKGMVEFSWRLGLSVFVETHKQDYTHLKDLGVLGVLEKVPHSQNQKR
Sbjct: 121 DGVVLDEELLKEDLKGMVEFSWRLGLSVFVETHKQDYTHLKDLGVLGVLEKVPHSQNQKR 180

Query: 181 IVFLD 185
           IVFLD
Sbjct: 181 IVFLD 185



>ref|NP_222982.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||D71954 hypothetical protein jhp0261 - Helicobacter pylori (strain J99)
 gb|AAD05840.1| (AE001463) putative [Helicobacter pylori J99]
          Length = 185

 Score =  344 bits (882), Expect = 3e-94
 Identities = 171/185 (92%), Positives = 177/185 (95%)

Query: 1   MQEIGILENLQKSLALKEGMLSYEMLGKSLSYNPYLPRVIPQTKDCVFVTPDEVLEKLLK 60
           MQEIGILENLQKSLALKEGMLSYEMLGKSLSYNPYLPR+IPQTKDCVF TPDEVLE LLK
Sbjct: 1   MQEIGILENLQKSLALKEGMLSYEMLGKSLSYNPYLPRIIPQTKDCVFATPDEVLETLLK 60

Query: 61  ENTHTDCVIVNFKGLYEIGAPSVFNLEVLGLLRRHASSLIVHQDLFISHYQLLESLVQGS 120
           ENT TDCVIVNFKGLYEIGAPSVF+LE+LGLLRRHASSLIVHQD FISHYQLLESLVQGS
Sbjct: 61  ENTRTDCVIVNFKGLYEIGAPSVFDLEILGLLRRHASSLIVHQDPFISHYQLLESLVQGS 120

Query: 121 DGVVLDEELLKEDLKGMVEFSWRLGLSVFVETHKQDYTHLKDLGVLGVLEKVPHSQNQKR 180
           DGV+LDEELLKEDLKGMVEF+WRLGLSVFVETHK DYTHLKDLGVLGVLE  PHS NQK+
Sbjct: 121 DGVILDEELLKEDLKGMVEFAWRLGLSVFVETHKPDYTHLKDLGVLGVLENSPHSYNQKK 180

Query: 181 IVFLD 185
           IVFLD
Sbjct: 181 IVFLD 185



>ref|NP_281685.1| (NC_002163) indole-3-glycerol phosphate synthase [Campylobacter
           jejuni]
 sp|Q9PI11|TRPC_CAMJE Indole-3-glycerol phosphate synthase (IGPS)
 pir||E81395 indole-3-glycerol phosphate synthase (EC 4.1.1.48) Cj0498
           [imported] - Campylobacter jejuni (strain NCTC 11168)
 emb|CAB75136.1| (AL139075) indole-3-glycerol phosphate synthase [Campylobacter
           jejuni]
          Length = 258

 Score = 71.2 bits (173), Expect = 5e-12
 Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 16/167 (9%)

Query: 6   ILENLQKSLALKEGMLSYEMLGKSLSYNPYLP--------RVIPQTKDCVFVTPDEVLEK 57
           I E  ++ L  ++  L Y+MLG+SL+ NP+ P        RV  + K    V      + 
Sbjct: 6   IFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKALKRVEKEVKIIAEVKKASPSKG 65

Query: 58  LLKENTHTDCVIVNFK-----GLYEIGAPSVF--NLEVLGLLRRHASSLIVHQDLFISHY 110
           +++E+     + +N++      +  +  P  F  +LE L L+RR+    ++ +D     Y
Sbjct: 66  VIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLEYLSLIRRYTQIPLLRKDFIFDEY 125

Query: 111 QLLESLVQGSDGVVLDEELLK-EDLKGMVEFSWRLGLSVFVETHKQD 156
           Q+LE+LV G+D V+L  ++L  ++LK ++EF+  LGL   VE H ++
Sbjct: 126 QILEALVYGADFVLLIAKMLSMKELKKLLEFARHLGLEALVEIHDKE 172



>ref|NP_623180.1| (NC_003869) Indole-3-glycerol phosphate synthase
           [Thermoanaerobacter tengcongensis]
 gb|AAM24784.1| (AE013113) Indole-3-glycerol phosphate synthase [Thermoanaerobacter
           tengcongensis]
          Length = 256

 Score = 46.2 bits (108), Expect = 2e-04
 Identities = 20/57 (35%), Positives = 36/57 (63%)

Query: 100 IVHQDLFISHYQLLESLVQGSDGVVLDEELLKEDLKGMVEFSWRLGLSVFVETHKQD 156
           ++ +D  I  YQ+ ES   G+D V+L   +L++ LKG  + + ++GL V VE H+++
Sbjct: 110 VLRKDFVIDEYQIYESKFLGADAVLLIVAILEDKLKGFCDIAKQIGLDVLVEVHEEE 166



>ref|NP_349757.1| (NC_003030) Indole-3-glycerol phosphate synthase [Clostridium
           acetobutylicum]
 sp|Q97EF3|TRPC_CLOAB Indole-3-glycerol phosphate synthase (IGPS)
 gb|AAK81097.1|AE007811_4 (AE007811) Indole-3-glycerol phosphate synthase [Clostridium
           acetobutylicum]
          Length = 262

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 61  ENTHTDCVIVNFKGLYEIGAPSVFNLEVLGLLRRHASSLIVHQDLFISHYQLLESLVQGS 120
           EN + D V +  +  Y +G       E + +++   S  I+ +D  +  YQL E+ + G+
Sbjct: 79  ENINIDAVSILTEKKYFLGKN-----EYIKIVKEVNSKPILRKDFIVDEYQLYEAKLIGA 133

Query: 121 DGVVLDEELLKEDLKGMVEFSWRLGLSVFVETHKQDYTHL 160
           D V+L   +LK+ L+     +  LGL    E H ++   L
Sbjct: 134 DAVLLIAAVLKDKLECFYNRTLELGLDSITEVHNEEEAKL 173



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.320    0.140    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,214,033
Number of Sequences: 1026957
Number of extensions: 4895437
Number of successful extensions: 10684
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10679
Number of HSP's gapped (non-prelim): 5
length of query: 185
length of database: 324,149,939
effective HSP length: 114
effective length of query: 71
effective length of database: 207,076,841
effective search space: 14702455711
effective search space used: 14702455711
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 93 (40.4 bits)