BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15644910|ref|NP_207080.1| hypothetical protein [Helicobacter pylori 26695] (480 letters) Database: /home/scwang/download_20020708_db/nr 1,026,957 sequences; 324,149,939 total letters Searching..................................................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207080.1|  (NC_000915) hypothetical protein [Helicoba...   958  0.0
ref|NP_222988.1|  (NC_000921) putative [Helicobacter pylori ...   906  0.0
emb|CAA72783.1|  (Y12061) putative orf1 [Helicobacter pylori]     732  0.0
ref|NP_282159.1|  (NC_002163) hypothetical protein Cj1009c [...   231  1e-59
ref|NP_213290.1|  (NC_000918) putative protein [Aquifex aeol...    55  2e-06

>ref|NP_207080.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64555 hypothetical protein HP0282 - Helicobacter pylori (strain 26695)
 gb|AAD07358.1| (AE000547) H. pylori predicted coding region HP0282 [Helicobacter
           pylori 26695]
          Length = 480

 Score =  958 bits (2476), Expect = 0.0
 Identities = 480/480 (100%), Positives = 480/480 (100%)

Query: 1   MELKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFAFHCFDATSS 60
           MELKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFAFHCFDATSS
Sbjct: 1   MELKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFAFHCFDATSS 60

Query: 61  FRLLQVLNDEVSDAFLIIQDFKEQRIIHKIIQTHFKRMCVVLSVKRDGEKTLENNEENKD 120
           FRLLQVLNDEVSDAFLIIQDFKEQRIIHKIIQTHFKRMCVVLSVKRDGEKTLENNEENKD
Sbjct: 61  FRLLQVLNDEVSDAFLIIQDFKEQRIIHKIIQTHFKRMCVVLSVKRDGEKTLENNEENKD 120

Query: 121 EKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDVPFGSIFAYRHIGSIRQKE 180
           EKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDVPFGSIFAYRHIGSIRQKE
Sbjct: 121 EKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDVPFGSIFAYRHIGSIRQKE 180

Query: 181 YRIVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYL 240
           YRIVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYL
Sbjct: 181 YRIVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYL 240

Query: 241 YIDMRLQNRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLALETESIEVNFD 300
           YIDMRLQNRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLALETESIEVNFD
Sbjct: 241 YIDMRLQNRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLALETESIEVNFD 300

Query: 301 FYRKSFIQKLHEDHQKKMGLIVVGRELFLSKKHRKALYKTATPVYKTNTSGLSKTSQSVV 360
           FYRKSFIQKLHEDHQKKMGLIVVGRELFLSKKHRKALYKTATPVYKTNTSGLSKTSQSVV
Sbjct: 301 FYRKSFIQKLHEDHQKKMGLIVVGRELFLSKKHRKALYKTATPVYKTNTSGLSKTSQSVV 360

Query: 361 VLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNKRYKNEIVNHYENLANAFNRKIEIF 420
           VLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNKRYKNEIVNHYENLANAFNRKIEIF
Sbjct: 361 VLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNKRYKNEIVNHYENLANAFNRKIEIF 420

Query: 421 QTDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPVAE 480
           QTDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPVAE
Sbjct: 421 QTDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPVAE 480

>ref|NP_222988.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||D71952 hypothetical protein jhp0267 - Helicobacter pylori (strain J99)
 gb|AAD05848.1| (AE001464) putative [Helicobacter pylori J99]
          Length = 478

 Score =  906 bits (2342), Expect = 0.0
 Identities = 455/478 (95%), Positives = 466/478 (97%)

Query: 3   LKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFAFHCFDATSSFR 62
           +KKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVK+ESLIPKNYPSTFAFHCFDATSSFR
Sbjct: 1   MKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKDESLIPKNYPSTFAFHCFDATSSFR 60

Query: 63  LLQVLNDEVSDAFLIIQDFKEQRIIHKIIQTHFKRMCVVLSVKRDGEKTLENNEENKDEK 122
           LLQVLNDEVSDAFLIIQDFKEQRIIHKIIQTHFKRM VVLSVKRD EKTLENNEENKDEK
Sbjct: 61  LLQVLNDEVSDAFLIIQDFKEQRIIHKIIQTHFKRMRVVLSVKRDSEKTLENNEENKDEK 120

Query: 123 LILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDVPFGSIFAYRHIGSIRQKEYR 182
           LILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDVPFGSIFAYRHIGSIRQKEYR
Sbjct: 121 LILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDVPFGSIFAYRHIGSIRQKEYR 180

Query: 183 IVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYLYI 242
           IVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVY QVKSNVGQFPAPFGKSIYLYI
Sbjct: 181 IVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVYHQVKSNVGQFPAPFGKSIYLYI 240

Query: 243 DMRLQNRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLALETESIEVNFDFY 302
           DMRLQ+RKAMMRDVYQALFLHK LKSYKLYIQVLHPTSPKFYHKFL+LETESIEVNFDFY
Sbjct: 241 DMRLQSRKAMMRDVYQALFLHKRLKSYKLYIQVLHPTSPKFYHKFLSLETESIEVNFDFY 300

Query: 303 RKSFIQKLHEDHQKKMGLIVVGRELFLSKKHRKALYKTATPVYKTNTSGLSKTSQSVVVL 362
            KSFIQKLHEDHQKKMGLIVVGRELF  KKHR+AL+KTATPVYKTNTSGLSKT+QS+VVL
Sbjct: 301 GKSFIQKLHEDHQKKMGLIVVGRELFFLKKHRRALHKTATPVYKTNTSGLSKTTQSIVVL 360

Query: 363 NESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNKRYKNEIVNHYENLANAFNRKIEIFQT 422
           NESL INEDMSSVIFDVSMQMDLGLLLYDFDPNK YKNEIVNHYENLAN FNRKIEIFQT
Sbjct: 361 NESLSINEDMSSVIFDVSMQMDLGLLLYDFDPNKHYKNEIVNHYENLANTFNRKIEIFQT 420

Query: 423 DIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPVAE 480
           DI+NPIMYLNSLRNPILHFMPFEECIT TR+ WFLSTKVEKLAFLNDD+PQIFIPVAE
Sbjct: 421 DIKNPIMYLNSLRNPILHFMPFEECITQTRYLWFLSTKVEKLAFLNDDHPQIFIPVAE 478

>emb|CAA72783.1| (Y12061) putative orf1 [Helicobacter pylori]
          Length = 383

 Score =  732 bits (1889), Expect = 0.0
 Identities = 368/383 (96%), Positives = 371/383 (96%)

Query: 98  MCVVLSVKRDGEKTLENNEENKDEKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEI 157
           M VVLSVK+DGEKTLENNEENKDEKLILIDEFEVLANKFISRLPNIPSTPREFGL KGEI
Sbjct: 1   MRVVLSVKKDGEKTLENNEENKDEKLILIDEFEVLANKFISRLPNIPSTPREFGLAKGEI 60

Query: 158 MEIDVPFGSIFAYRHIGSIRQKEYRIVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILN 217
           MEIDVPFGSIF YRHIGSI Q+EYRIVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILN
Sbjct: 61  MEIDVPFGSIFPYRHIGSISQQEYRIVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILN 120

Query: 218 AVYLQVKSNVGQFPAPFGKSIYLYIDMRLQNRKAMMRDVYQALFLHKHLKSYKLYIQVLH 277
           AVYLQVKSNVGQFPAPFGKSIYLYIDMRL   KAMM DVYQALFLHKHLKSYKLYIQVLH
Sbjct: 121 AVYLQVKSNVGQFPAPFGKSIYLYIDMRLPKPKAMMPDVYQALFLHKHLKSYKLYIQVLH 180

Query: 278 PTSPKFYHKFLALETESIEVNFDFYRKSFIQKLHEDHQKKMGLIVVGRELFLSKKHRKAL 337
           PTSPKF HKFL+LETESIEVNFDFY KSFIQKLHEDHQKKMGLIVVGRELFLSKKHRKAL
Sbjct: 181 PTSPKFCHKFLSLETESIEVNFDFYGKSFIQKLHEDHQKKMGLIVVGRELFLSKKHRKAL 240

Query: 338 YKTATPVYKTNTSGLSKTSQSVVVLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNKR 397
           YKTATPVYKTNTSGLSKTSQSVVVLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNKR
Sbjct: 241 YKTATPVYKTNTSGLSKTSQSVVVLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNKR 300

Query: 398 YKNEIVNHYENLANAFNRKIEIFQTDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFL 457
           YKNEIVNHYENLAN  NRKIEIFQTDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFL
Sbjct: 301 YKNEIVNHYENLANTLNRKIEIFQTDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFL 360

Query: 458 STKVEKLAFLNDDNPQIFIPVAE 480
           STKVEKLAFLNDDNPQIFIPVAE
Sbjct: 361 STKVEKLAFLNDDNPQIFIPVAE 383

>ref|NP_282159.1| (NC_002163) hypothetical protein Cj1009c [Campylobacter jejuni]
 pir||F81302 hypothetical protein Cj1009c [imported] - Campylobacter jejuni
           (strain NCTC 11168)
 emb|CAB73265.1| (AL139077) hypothetical protein Cj1009c [Campylobacter jejuni]
          Length = 466

 Score =  231 bits (589), Expect = 1e-59
 Identities = 139/477 (29%), Positives = 256/477 (53%), Gaps = 13/477 (2%)

Query: 3   LKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFA-FHCFDATSSF 61
           +  I +I+DGI+AK+FL+ +        F+ VV +N      N  S +   H FD TS+ 
Sbjct: 1   MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNISSEYIDLHYFDPTSTA 60

Query: 62  RLLQVLNDEVSDAFLIIQDFKEQRIIHKIIQTHFKRMCVVLSVKRDGEKTLENNEENKDE 121
           RL  +++ +   AF+ +QD  E +  ++ +++    +   L ++      L  N+ + + 
Sbjct: 61  RLENIMSKDFKQAFIYMQDEFETKKSYEALRS----LNPNLEIEIMDFWGLSVNDTHAN- 115

Query: 122 KLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDVPFGSIFAYRHIGSIRQKEY 181
              L D    L+ +F+  LP+I  T +  GLG GEIME+ +P GSIFAYRHI SI+QK +
Sbjct: 116 ---LADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFAYRHISSIQQKRW 172

Query: 182 RIVGLYRNDVLLLSTKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYLY 241
           RIV +YRN  +     S V++P D +L+ G+P +L +++  ++   GQFP PFG +++  
Sbjct: 173 RIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKAGQFPMPFGSNVFAL 232

Query: 242 IDMRLQNRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLALETESIEVNFDF 301
           IDM+  N+    R +   L L +   + + +I V++P     Y K   L  +   V FD+
Sbjct: 233 IDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYEKLKKLSEDKEGVFFDY 292

Query: 302 YRKSFIQKLHEDHQKKMGLIVVGRELFLSKKHRKALYKTATPVYKTNTSGLSKTSQSVVV 361
           +   F Q         +GL+V   + F  +K ++A +    P+ K   +   +  +++++
Sbjct: 293 FNTDFKQISMWLQNNDIGLVVTDIKNF--EKEKQAFFDLKIPIMKVGEASFDELKEAIIL 350

Query: 362 LNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNKRYKNEIVNHYENLANAFNRKIEIFQ 421
             +  ++ E+ ++VI D+S Q+D G++LY ++PN +   ++  ++ +L+  +++ I+I  
Sbjct: 351 SADESEL-ENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEEYFRSLSKLYDKNIQIIN 409

Query: 422 TDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPV 478
            +  NP++ L   R  +L F+ F++ + +  F   LST + +  +    N Q+FIPV
Sbjct: 410 KNDENPLLNL-QYREDLLQFVSFQKELLNRDFARNLSTNLNRHYYKMRQNYQLFIPV 465

>ref|NP_213290.1| (NC_000918) putative protein [Aquifex aeolicus]
 pir||F70337 hypothetical protein aq_414 - Aquifex aeolicus
 gb|AAC06697.1| (AE000689) putative protein [Aquifex aeolicus]
          Length = 439

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 31/91 (34%), Positives = 46/91 (50%)

Query: 147 PREFGLGKGEIMEIDVPFGSIFAYRHIGSIRQKEYRIVGLYRNDVLLLSTKSLVIQPRDI 206
           P   GL KGEI+EI +   S   Y+ +  I+ ++ R+  +YRN  LLL   +L +Q  D 
Sbjct: 143 PVGIGLEKGEIVEITLTEYSPLVYKRLRDIKIRKARVALVYRNGKLLLPRSNLRLQSGDR 202

Query: 207 LLVAGNPEILNAVYLQVKSNVGQFPAPFGKS 237
           LLV G P  +N         +  FP  +G +
Sbjct: 203 LLVVGEPSSVNVFIHTATEGISDFPLNWGSA 233

  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.324    0.141    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 290,694,440
Number of Sequences: 1026957
Number of extensions: 12184534
Number of successful extensions: 29802
Number of sequences better than 1.0e-02: 5
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29793
Number of HSP's gapped (non-prelim): 5
length of query: 480
length of database: 324,149,939
effective HSP length: 125
effective length of query: 355
effective length of database: 195,780,314
effective search space: 69502011470
effective search space used: 69502011470
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 99 (42.7 bits)