BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644661|ref|NP_206830.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(177 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206830.1| (NC_000915) conserved hypothetical secrete... 355 1e-97
ref|NP_222746.1| (NC_000921) putative [Helicobacter pylori ... 337 4e-92
ref|NP_438614.1| (NC_000907) conserved hypothetical protein... 129 1e-29
ref|NP_246615.1| (NC_002663) unknown [Pasteurella multocida... 126 1e-28
>ref|NP_206830.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||D64523 conserved hypothetical secreted protein HP0028 - Helicobacter
pylori (strain 26695)
gb|AAD07099.1| (AE000525) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 177
Score = 355 bits (911), Expect = 1e-97
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MKLIKFVRNVVLFILTAIFLAFMLLVSYCMPHYSAAVISGVEVKRMNENENTPNNKEVKT 60
MKLIKFVRNVVLFILTAIFLAFMLLVSYCMPHYSAAVISGVEVKRMNENENTPNNKEVKT
Sbjct: 1 MKLIKFVRNVVLFILTAIFLAFMLLVSYCMPHYSAAVISGVEVKRMNENENTPNNKEVKT 60
Query: 61 LARDVYFVQTYDPKDQKSVTVYRNEDTRFSFPFYFKFNSADISALAQSLINQQVEVKYYG 120
LARDVYFVQTYDPKDQKSVTVYRNEDTRFSFPFYFKFNSADISALAQSLINQQVEVKYYG
Sbjct: 61 LARDVYFVQTYDPKDQKSVTVYRNEDTRFSFPFYFKFNSADISALAQSLINQQVEVKYYG 120
Query: 121 WRINLFNMFPNVIFLKPLKESTDISKPIFSWILYALLLMGFFISARSVCTLFKSKAH 177
WRINLFNMFPNVIFLKPLKESTDISKPIFSWILYALLLMGFFISARSVCTLFKSKAH
Sbjct: 121 WRINLFNMFPNVIFLKPLKESTDISKPIFSWILYALLLMGFFISARSVCTLFKSKAH 177
>ref|NP_222746.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71982 hypothetical protein jhp0024 - Helicobacter pylori (strain J99)
gb|AAD05608.1| (AE001442) putative [Helicobacter pylori J99]
Length = 175
Score = 337 bits (864), Expect = 4e-92
Identities = 164/175 (93%), Positives = 171/175 (97%)
Query: 3 LIKFVRNVVLFILTAIFLAFMLLVSYCMPHYSAAVISGVEVKRMNENENTPNNKEVKTLA 62
+IKFVRNVVLFILTAIFLAFMLLVSYCMPHYS AVISGVEVKRMNENENTPNNKEVKTLA
Sbjct: 1 MIKFVRNVVLFILTAIFLAFMLLVSYCMPHYSVAVISGVEVKRMNENENTPNNKEVKTLA 60
Query: 63 RDVYFVQTYDPKDQKSVTVYRNEDTRFSFPFYFKFNSADISALAQSLINQQVEVKYYGWR 122
RDVYFVQTYDPKDQKSVTVYRNEDTRF FPFYFKFNSADISALAQSL+NQQVEV+YYGWR
Sbjct: 61 RDVYFVQTYDPKDQKSVTVYRNEDTRFGFPFYFKFNSADISALAQSLVNQQVEVQYYGWR 120
Query: 123 INLFNMFPNVIFLKPLKESTDISKPIFSWILYALLLMGFFISARSVCTLFKSKAH 177
INLFNMFPNVIFLKPLKES ++SKP+FSWILYALLL+GFFISARSVCTLFK KAH
Sbjct: 121 INLFNMFPNVIFLKPLKESDEMSKPVFSWILYALLLVGFFISARSVCTLFKGKAH 175
>ref|NP_438614.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P43999|Y453_HAEIN Hypothetical protein HI0453
pir||H64007 hypothetical protein HI0453 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22111.1| (U32728) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 174
Score = 129 bits (324), Expect = 1e-29
Identities = 69/166 (41%), Positives = 98/166 (58%), Gaps = 5/166 (3%)
Query: 12 LFILTAIFLAFML-LVSYCMPHYSAAVISGVEVKRMNENENTPNNKEVKTLARDVYFVQT 70
LFI+ +F FM +V+Y PHY ++GVEVKR++++ + RDVY++ T
Sbjct: 9 LFIVVFLFHGFMFSVVNYVFPHYDVTRVTGVEVKRVDKDGPITKSNPADGPTRDVYYINT 68
Query: 71 YDPKDQKSVTVYRNEDTRFSFPFYFKFNSADISALAQSLINQQ--VEVKYYGWRINLFNM 128
+ D + VYRNEDTR+ FPFYFKF SA++ A AQ+L N V++KYYGWRI + +
Sbjct: 69 QN--DDGKIMVYRNEDTRWGFPFYFKFGSANLQAEAQALGNDNKLVQIKYYGWRITMVDE 126
Query: 129 FPNVIFLKPLKESTDISKPIFSWILYALLLMGFFISARSVCTLFKS 174
+ N +K + S PI SWILY LL F+S + + F S
Sbjct: 127 YRNATSIKEITADDTPSNPIVSWILYVFLLATLFLSIQFIRGWFDS 172
>ref|NP_246615.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03760.1| (AE006204) unknown [Pasteurella multocida]
Length = 174
Score = 126 bits (317), Expect = 1e-28
Identities = 70/168 (41%), Positives = 106/168 (62%), Gaps = 7/168 (4%)
Query: 13 FILTAIFLAFMLL---VSYCMPHYSAAVISGVEVKRMNENENTPNNKEVKTLARDVYFVQ 69
F LT IF+ ++L V++ P Y ++GVEVKR++++ RDVYF+
Sbjct: 8 FFLTVIFVFHLVLFATVNFVTPSYEVTKVTGVEVKRVDKDGPITKANPADGPTRDVYFIN 67
Query: 70 TYDPKDQKSVTVYRNEDTRFSFPFYFKFNSADISALAQSLIN--QQVEVKYYGWRINLFN 127
T + +D K + VYRNEDTR+ FPFYFKF SA++ A A++LI Q+V++KYYGWR+ +F+
Sbjct: 68 TQN-QDGK-IMVYRNEDTRWGFPFYFKFGSANLHAEAEALIKEGQKVQIKYYGWRLVMFD 125
Query: 128 MFPNVIFLKPLKESTDISKPIFSWILYALLLMGFFISARSVCTLFKSK 175
F N + +K + E S PIF++ILY +LL+ F S + + F S+
Sbjct: 126 EFRNALNIKAVDEHASPSHPIFAYILYFILLITLFFSVQFIRGWFDSE 173
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.327 0.139 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,339,925
Number of Sequences: 1026957
Number of extensions: 3859651
Number of successful extensions: 14969
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14961
Number of HSP's gapped (non-prelim): 6
length of query: 177
length of database: 324,149,939
effective HSP length: 113
effective length of query: 64
effective length of database: 208,103,798
effective search space: 13318643072
effective search space used: 13318643072
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 93 (40.4 bits)