BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644913|ref|NP_207083.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(418 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207083.1| (NC_000915) conserved hypothetical protein... 828 0.0
ref|NP_222991.1| (NC_000921) putative [Helicobacter pylori ... 807 0.0
ref|NP_282156.1| (NC_002163) hypothetical proteinCj1006c [C... 425 e-118
ref|NP_604111.1| (NC_003454) Fe-S oxidoreductase [Fusobacte... 204 2e-51
ref|NP_646345.1| (NC_003923) conserved hypothetical protein... 204 2e-51
ref|NP_213332.1| (NC_000918) hypothetical protein [Aquifex ... 204 2e-51
ref|NP_372100.1| (NC_002758) conserved hypothetical protein... 203 3e-51
ref|NP_242217.1| (NC_002570) BH1351~unknown conserved prote... 201 1e-50
sp|Q49573|Y16R_MYCIO Hypothetical 51.3 kDa protein in 16S R... 200 3e-50
ref|NP_658342.1| (NC_003995) UPF0004, Uncharacterized prote... 200 3e-50
ref|NP_622614.1| (NC_003869) 2-methylthioadenine synthetase... 195 7e-49
ref|NP_347917.1| (NC_003030) Fe-S oxidoreductases [Clostrid... 192 5e-48
ref|NP_390421.1| (NC_000964) similar to hypothetical protei... 192 6e-48
ref|NP_562941.1| (NC_003366) conserved hypothetical protein... 187 2e-46
gb|AAD02057.1| (AF036764) unknown [Clostridium acetobutylicum] 187 2e-46
ref|NP_220797.1| (NC_000963) unknown [Rickettsia prowazekii... 183 4e-45
ref|NP_228639.1| (NC_000853) conserved hypothetical protein... 183 4e-45
ref|NP_539050.1| (NC_003317) Fe-S OXIDOREDUCTASE [Brucella ... 183 4e-45
ref|NP_105219.1| (NC_002678) hypothetical protein [Mesorhiz... 176 5e-43
ref|NP_360217.1| (NC_003103) unknown [Rickettsia conorii] >... 174 1e-42
ref|NP_660758.1| (NC_004061) hypothetical 53.7 kD protein i... 173 4e-42
ref|NP_371816.1| (NC_002758) conserved hypothetical protein... 169 6e-41
ref|NP_376401.1| (NC_003106) 418aa long conserved hypotheti... 169 7e-41
ref|NP_387344.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 168 9e-41
ref|NP_622974.1| (NC_003869) 2-methylthioadenine synthetase... 166 4e-40
ref|NP_243238.1| (NC_002570) BH2372~unknown conserved prote... 166 6e-40
ref|NP_422478.1| (NC_002696) conserved hypothetical protein... 164 1e-39
ref|NP_657738.1| (NC_003995) UPF0004, Uncharacterized prote... 164 2e-39
ref|NP_240253.1| (NC_002528) hypothetical protein [Buchnera... 162 9e-39
ref|NP_228462.1| (NC_000853) conserved hypothetical protein... 162 9e-39
ref|NP_353388.1| (NC_003062) AGR_C_623p [Agrobacterium tume... 159 4e-38
ref|NP_531062.1| (NC_003304) miaB protein [Agrobacterium tu... 159 4e-38
ref|NP_300532.1| (NC_002491) hypothetical protein [Chlamydo... 158 1e-37
ref|NP_360883.1| (NC_003103) unknown [Rickettsia conorii] >... 157 2e-37
ref|NP_348462.1| (NC_003030) Predicted Fe-S oxidoreductase,... 157 2e-37
ref|NP_389583.1| (NC_000964) similar to hypothetical protei... 157 2e-37
ref|NP_224673.1| (NC_000922) Hypothetical Protein [Chlamydo... 156 4e-37
ref|NP_603372.1| (NC_003454) MIAB protein [Fusobacterium nu... 155 8e-37
ref|NP_533359.1| (NC_003304) conserved hypothetical protein... 154 2e-36
ref|NP_355629.1| (NC_003062) AGR_C_4885p [Agrobacterium tum... 154 2e-36
ref|NP_221158.1| (NC_000963) unknown [Rickettsia prowazekii... 154 2e-36
ref|NP_562009.1| (NC_003366) conserved hypothetical protein... 153 3e-36
ref|NP_207067.1| (NC_000915) conserved hypothetical ATP-bin... 152 5e-36
ref|NP_106183.1| (NC_002678) hypothetical protein [Mesorhiz... 152 5e-36
ref|NP_222975.1| (NC_000921) putative [Helicobacter pylori ... 152 7e-36
ref|NP_281645.1| (NC_002163) hypothetical protein Cj0458c [... 152 9e-36
ref|NP_622995.1| (NC_003869) 2-methylthioadenine synthetase... 152 9e-36
ref|NP_274862.1| (NC_003112) conserved hypothetical protein... 151 1e-35
ref|NP_283403.1| (NC_003116) hypothetical protein NMA0590 [... 151 1e-35
ref|NP_343738.1| (NC_002754) Conserved hypothetical protein... 150 3e-35
ref|NP_213198.1| (NC_000918) hypothetical protein [Aquifex ... 150 3e-35
ref|NP_286386.1| (NC_002655) orf, hypothetical protein [Esc... 149 6e-35
ref|NP_455239.1| (NC_003198) MiaB protein (putative tRNA-th... 149 8e-35
ref|NP_308726.1| (NC_002695) hypothetical protein [Escheric... 149 8e-35
ref|NP_459662.1| (NC_003197) methylthiolation of isopenteny... 149 8e-35
ref|NP_518652.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 147 2e-34
ref|NP_384511.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 147 3e-34
ref|NP_223389.1| (NC_000921) putative [Helicobacter pylori ... 145 7e-34
ref|NP_540893.1| (NC_003317) MIAB PROTEIN [Brucella meliten... 145 7e-34
ref|NP_629911.1| (NC_003888) conserved hypothetical protein... 145 9e-34
ref|NP_207528.1| (NC_000915) conserved hypothetical protein... 145 9e-34
ref|NP_247862.1| (NC_000909) conserved hypothetical protein... 144 2e-33
ref|NP_642776.1| (NC_003919) conserved hypothetical protein... 143 3e-33
ref|NP_406146.1| (NC_003143) putative tRNA-thiotransferase ... 143 3e-33
ref|NP_282594.1| (NC_002163) hypothetical protein Cj1454c [... 143 4e-33
ref|NP_245938.1| (NC_002663) unknown [Pasteurella multocida... 143 4e-33
ref|NP_637682.1| (NC_003902) conserved hypothetical protein... 140 2e-32
ref|NP_148004.1| (NC_000854) hypothetical protein [Aeropyru... 140 4e-32
ref|NP_438192.1| (NC_000907) conserved hypothetical protein... 139 5e-32
ref|NP_224460.1| (NC_000922) conserved hypothetical protein... 139 8e-32
ref|NP_298196.1| (NC_002488) conserved hypothetical protein... 139 8e-32
ref|NP_445054.1| (NC_002179) conserved hypothetical protein... 139 8e-32
ref|NP_300310.1| (NC_002491) conserved hypothetical protein... 139 8e-32
ref|NP_579641.1| (NC_003413) hypothetical protein [Pyrococc... 138 1e-31
emb|CAA10332.1| (AJ131242) hypothetical protein [Wolinella ... 137 3e-31
ref|NP_213577.1| (NC_000918) hypothetical protein [Aquifex ... 137 3e-31
ref|NP_252669.1| (NC_002516) conserved hypothetical protein... 137 3e-31
ref|NP_230609.1| (NC_002505) conserved hypothetical protein... 137 3e-31
ref|NP_562591.1| (NC_003366) conserved hypothetical protein... 136 4e-31
ref|NP_127405.1| (NC_000868) hypothetical protein [Pyrococc... 136 4e-31
ref|NP_348438.1| (NC_003030) Predicted Fe-S oxidoreductase ... 135 9e-31
pir||S57900 conserved hypothetical protein 2 (hemL 3' regio... 135 9e-31
ref|NP_219191.1| (NC_000919) conserved hypothetical protein... 135 9e-31
ref|NP_650002.1| (NM_141745) CG6345 gene product [Drosophil... 134 2e-30
ref|NP_485355.1| (NC_003272) hypothetical protein [Nostoc s... 133 3e-30
ref|NP_601156.1| (NC_003450) COG0621:2-methylthioadenine sy... 132 6e-30
dbj|BAB99342.1| (AP005280) 2-methylthioadenine synthetase [... 132 6e-30
ref|NP_440473.1| (NC_000911) hypothetical protein [Synechoc... 131 2e-29
ref|NP_294874.1| (NC_001263) conserved hypothetical protein... 130 4e-29
ref|NP_337308.1| (NC_002755) conserved hypothetical protein... 129 6e-29
ref|NP_217249.1| (NC_000962) hypothetical protein Rv2733c [... 128 1e-28
ref|NP_143704.1| (NC_000961) hypothetical protein [Pyrococc... 128 1e-28
sp|O59545|YI75_PYRHO Hypothetical protein PH1875 128 1e-28
ref|NP_111857.1| (NC_002689) 2-methylthioadenine synthetase... 128 1e-28
ref|NP_616094.1| (NC_003552) 2-methylthioadenine synthase [... 126 5e-28
ref|NP_275963.1| (NC_000916) conserved protein [Methanother... 126 5e-28
ref|NP_070075.1| (NC_000917) conserved hypothetical protein... 125 1e-27
ref|NP_614364.1| (NC_003551) 2-methylthioadenine synthetase... 124 2e-27
ref|NP_485265.1| (NC_003272) hypothetical protein [Nostoc s... 124 3e-27
gb|AAL03926.1|U30252_14 (U30252) unknown [Synechococcus sp.... 124 3e-27
ref|NP_634206.1| (NC_003901) hypothetical protein [Methanos... 123 4e-27
ref|XP_165724.1| (XM_165724) hypothetical protein XP_165724... 123 5e-27
ref|NP_060244.1| (NM_017774) hypothetical protein FLJ20342 ... 123 5e-27
emb|CAC15883.2| (AL355392) dJ1187J4.4 (CGI-05 protein (LOC5... 122 6e-27
ref|XP_015893.2| (XM_015893) similar to hypothetical protei... 122 6e-27
ref|NP_229658.1| (NC_000853) conserved hypothetical protein... 122 8e-27
ref|NP_301734.1| (NC_002677) conserved hypothetical protein... 122 1e-26
pir||S72937 hypothetical protein B2235_C2_195 - Mycobacteri... 122 1e-26
dbj|BAB14760.1| (AK023992) unnamed protein product [Homo sa... 122 1e-26
gb|EAA09381.1| (AAAB01008900) agCP15149 [Anopheles gambiae ... 120 2e-26
gb|EAA00300.1| (AAAB01008986) agCP9825 [Anopheles gambiae s... 120 4e-26
dbj|BAB55120.1| (AK027449) unnamed protein product [Homo sa... 119 5e-26
ref|XP_110019.1| (XM_110019) RIKEN cDNA 6620401C13 [Mus mus... 118 1e-25
ref|NP_565035.1| (NM_105867) expressed protein [Arabidopsis... 116 6e-25
ref|NP_393736.1| (NC_002578) hypothetical protein [Thermopl... 116 6e-25
ref|NP_662284.1| (NC_002932) conserved hypothetical protein... 115 7e-25
ref|NP_560369.1| (NC_003364) conserved hypothetical protein... 115 1e-24
gb|AAF60223.1|AF177477_1 (AF177477) CDK5 activator-binding ... 114 2e-24
ref|NP_629877.1| (NC_003888) conserved hypothetical protein... 113 4e-24
ref|NP_080152.1| (NM_025876) RIKEN cDNA 2310066P17 [Mus mus... 113 5e-24
ref|NP_662869.1| (NC_002932) conserved hypothetical protein... 112 6e-24
ref|NP_195357.1| (NM_119802) putative protein [Arabidopsis ... 112 6e-24
ref|NP_218710.1| (NC_000919) conserved hypothetical protein... 112 8e-24
pir||T10440 conserved hypothetical protein - Mycoplasma iow... 110 3e-23
ref|NP_442485.1| (NC_000911) hypothetical protein [Synechoc... 108 9e-23
ref|NP_611207.1| (NM_137363) CG6550 gene product [Drosophil... 108 9e-23
ref|NP_280583.1| (NC_002607) Vng1861c [Halobacterium sp. NR... 108 2e-22
ref|NP_498290.1| (NM_065889) F25B5.5.p [Caenorhabditis eleg... 107 3e-22
ref|NP_057166.1| (NM_016082) CGI-05 protein; hypothetical p... 106 4e-22
ref|NP_637912.1| (NC_003902) conserved hypothetical protein... 100 2e-20
ref|NP_246510.1| (NC_002663) unknown [Pasteurella multocida... 99 7e-20
ref|NP_643044.1| (NC_003919) conserved hypothetical protein... 98 2e-19
pir||T10441 conserved hypothetical protein - Mycoplasma iow... 97 3e-19
ref|NP_232248.1| (NC_002505) conserved hypothetical protein... 97 3e-19
ref|NP_286601.1| (NC_002655) orf, hypothetical protein [Esc... 97 5e-19
ref|NP_455386.1| (NC_003198) conserved hypothetical protein... 95 1e-18
ref|NP_459829.1| (NC_003197) putative Fe-S oxidoreductases ... 94 2e-18
gb|AAG43441.1|AF186181_1 (AF186181) slr0082 [Synechococcus ... 94 3e-18
gb|EAA02284.1| (AAAB01003427) ebiP1722 [Anopheles gambiae s... 94 3e-18
ref|NP_519757.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 93 5e-18
gb|AAF23796.1|AF213822_11 (AF213822) hypothetical protein [... 92 9e-18
ref|NP_249607.1| (NC_002516) conserved hypothetical protein... 92 1e-17
gb|AAC38321.2| (AF026544) unknown [Ralstonia eutropha] 92 1e-17
dbj|BAB96555.1| (AB085816) putative fructokinase-like prote... 90 4e-17
dbj|BAB26688.1| (AK010081) data source:SPTR, source key:Q9J... 89 1e-16
ref|NP_057492.1| (NM_016408) hypothetical protein HSPC167; ... 89 1e-16
ref|NP_285512.1| (NC_001264) conserved hypothetical protein... 84 3e-15
gb|AAH01215.1|AAH01215 (BC001215) Similar to CGI-05 protein... 83 5e-15
ref|NP_541681.1| (NC_003318) Fe-S OXIDOREDUCTASE [Brucella ... 79 1e-13
ref|NP_102288.1| (NC_002678) hypothetical protein [Mesorhiz... 78 2e-13
ref|NP_248493.1| (NC_000909) conserved hypothetical protein... 67 3e-10
ref|NP_614081.1| (NC_003551) Predicted Fe-S oxidoreductase ... 65 1e-09
ref|NP_227997.1| (NC_000853) conserved hypothetical protein... 64 4e-09
ref|NP_276299.1| (NC_000916) phosphonoacetaldehyde methylas... 62 2e-08
emb|CAA72027.1| (Y11140) homology to M. leprae B2235_C2_195... 55 2e-06
ref|NP_615215.1| (NC_003552) conserved hypothetical protein... 53 8e-06
ref|NP_579452.1| (NC_003413) hypothetical protein [Pyrococc... 52 1e-05
ref|NP_247860.1| (NC_000909) conserved hypothetical protein... 52 1e-05
ref|NP_633546.1| (NC_003901) Fe-S oxidoreductase [Methanosa... 52 2e-05
ref|NP_622643.1| (NC_003869) Fe-S oxidoreductases family 2 ... 51 3e-05
ref|NP_248630.1| (NC_000909) conserved hypothetical protein... 50 5e-05
ref|NP_562561.1| (NC_003366) Mg-protoporphyrin IX monomethy... 49 8e-05
ref|NP_614072.1| (NC_003551) Fe-S oxidoreductase family pro... 47 3e-04
ref|NP_126164.1| (NC_000868) hypothetical protein [Pyrococc... 47 4e-04
ref|NP_614215.1| (NC_003551) Fe-S oxidoreductase family pro... 47 5e-04
ref|NP_347657.1| (NC_003030) Predicted Fe-S oxidoreductases... 47 5e-04
ref|NP_143544.1| (NC_000961) hypothetical protein [Pyrococc... 46 0.001
ref|NP_232289.1| (NC_002505) conserved hypothetical protein... 43 0.006
ref|NP_438493.1| (NC_000907) conserved hypothetical protein... 43 0.008
>ref|NP_207083.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|P56130|Y285_HELPY Hypothetical protein HP0285
pir||E64555 conserved hypothetical protein HP0285 - Helicobacter pylori
(strain 26695)
gb|AAD07353.1| (AE000547) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 418
Score = 828 bits (2138), Expect = 0.0
Identities = 418/418 (100%), Positives = 418/418 (100%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK
Sbjct: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
Query: 61 KMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENK 120
KMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENK
Sbjct: 61 KMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENK 120
Query: 121 HLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGV 180
HLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGV
Sbjct: 121 HLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGV 180
Query: 181 QEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDFL 240
QEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDFL
Sbjct: 181 QEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDFL 240
Query: 241 EKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGESGSVFEK 300
EKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGESGSVFEK
Sbjct: 241 EKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGESGSVFEK 300
Query: 301 AFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQ 360
AFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQ
Sbjct: 301 AFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQ 360
Query: 361 LKLNTPLKALVEVQKDGEFKALDQFFNPIKIKSDKPLRASFLEIKEYEIKERENHAVF 418
LKLNTPLKALVEVQKDGEFKALDQFFNPIKIKSDKPLRASFLEIKEYEIKERENHAVF
Sbjct: 361 LKLNTPLKALVEVQKDGEFKALDQFFNPIKIKSDKPLRASFLEIKEYEIKERENHAVF 418
>ref|NP_222991.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZMF0|Y285_HELPJ Hypothetical protein JHP0270
pir||G71952 hypothetical protein jhp0270 - Helicobacter pylori (strain J99)
gb|AAD05851.1| (AE001464) putative [Helicobacter pylori J99]
Length = 418
Score = 807 bits (2084), Expect = 0.0
Identities = 407/418 (97%), Positives = 408/418 (97%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
MKKVYFKTFGCRTNLFDTQVM ENLKDFS TLEEQEADIIIINSCTVTNG DSAVRSYA+
Sbjct: 1 MKKVYFKTFGCRTNLFDTQVMGENLKDFSATLEEQEADIIIINSCTVTNGTDSAVRSYAR 60
Query: 61 KMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENK 120
KMARLDKEVLFTGCGVKTQGKELFEKG LKGVFGHDNKEKINALLQEKKRFFIDDNLENK
Sbjct: 61 KMARLDKEVLFTGCGVKTQGKELFEKGLLKGVFGHDNKEKINALLQEKKRFFIDDNLENK 120
Query: 121 HLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGV 180
HLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGV
Sbjct: 121 HLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGV 180
Query: 181 QEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDFL 240
QEVVLTGTNVGSYGKDRGSNIARLIKKLSQI GLKRIRIGSLEPNQINDEFLELLEEDFL
Sbjct: 181 QEVVLTGTNVGSYGKDRGSNIARLIKKLSQITGLKRIRIGSLEPNQINDEFLELLEEDFL 240
Query: 241 EKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGESGSVFEK 300
EKHLHIALQHSHD MLERMNRRNRTKSDRELLE IASKNFAIGTDFIVGHPGES SVFEK
Sbjct: 241 EKHLHIALQHSHDFMLERMNRRNRTKSDRELLEIIASKNFAIGTDFIVGHPGESESVFEK 300
Query: 301 AFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQ 360
AFKNLESLPLTHIHPFIYSKRKDTPSSLM DSVSLEDSKKRLNAIKDLIFHKNKAFRQLQ
Sbjct: 301 AFKNLESLPLTHIHPFIYSKRKDTPSSLMRDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQ 360
Query: 361 LKLNTPLKALVEVQKDGEFKALDQFFNPIKIKSDKPLRASFLEIKEYEIKERENHAVF 418
LKLNTPLKALVE QKDGEFKALDQFFNPIKIKSDKPLRASFLEIKEYEIKERENHAVF
Sbjct: 361 LKLNTPLKALVEAQKDGEFKALDQFFNPIKIKSDKPLRASFLEIKEYEIKERENHAVF 418
>ref|NP_282156.1| (NC_002163) hypothetical proteinCj1006c [Campylobacter jejuni]
pir||C81376 hypothetical protein Cj1006c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73262.1| (AL139076) hypothetical proteinCj1006c [Campylobacter jejuni]
Length = 416
Score = 425 bits (1093), Expect = e-118
Identities = 207/413 (50%), Positives = 294/413 (71%), Gaps = 5/413 (1%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKK 61
+KV+FKTFGCRTN++DT+++ +KD+ +E +A II++NSCTVTNGADS ++SY
Sbjct: 3 EKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVNSCTVTNGADSGIKSYVNT 62
Query: 62 MARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENKH 121
M + +V+ TGCG ++GKEL +K + GV G NK+KIN L K F+ NL
Sbjct: 63 MQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAKTSFYELGNLN--F 120
Query: 122 LDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQ 181
+D +V E+ T+AF+KIQEGCDF C+YCIIPSVRG++RS +E+ +L+QV +L + G
Sbjct: 121 IDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSRSVDEKALLKQVEILGANGYS 180
Query: 182 EVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDFLE 241
E+VLTGTN+GSYG G+ + +L++K+ QI G+KRIR+GSLEP Q+++ FLE+L+E +LE
Sbjct: 181 EIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRLGSLEPAQLDESFLEILDEAWLE 240
Query: 242 KHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGESGSVFEKA 301
+HLHIALQH+ + ML M RR+ T +D +L TIASK +A+GTDFIV HPGES ++++A
Sbjct: 241 RHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIASKGYALGTDFIVAHPGESEELWQEA 300
Query: 302 FKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQL 361
+N + PLTHIH FI+S R +T S+ M D ++ +K+RLN +K ++ N FR+
Sbjct: 301 LRNFKEFPLTHIHAFIFSPRNNTHSATMKDVINGTLAKERLNTLKSIVEKNNYEFRK--- 357
Query: 362 KLNTPLKALVEVQKDGEFKALDQFFNPIKIKSDKPLRASFLEIKEYEIKEREN 414
K L+ LVE QKDG F+ DQFFN IKIKSDK + ++ I EYE++E+ N
Sbjct: 358 KNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKDIAKEWIVISEYEVQEKSN 410
>ref|NP_604111.1| (NC_003454) Fe-S oxidoreductase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL95410.1| (AE010627) Fe-S oxidoreductase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 435
Score = 204 bits (519), Expect = 2e-51
Identities = 128/414 (30%), Positives = 221/414 (52%), Gaps = 29/414 (7%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
KKV F T GC+ N ++T+ + L + + E ++DI IINSCTVT+ AD R+
Sbjct: 5 KKVAFHTLGCKVNQYETESIKNQLIKRGYEEVPFEDKSDIYIINSCTVTSIADRKTRNML 64
Query: 60 KKMARLDKE--VLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKI--------NALLQEKK 109
++ +++ + V+ TGC +T +E+ E + V + NK I + + +K
Sbjct: 65 RRAKKINPKAKVIVTGCYAQTNSREILEIEDVDFVIDNKNKSNIVNFVGAIEDISFEREK 124
Query: 110 RFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKIL 169
I E + + + E TRA++KIQ+GC+ C+YC IP RG++RS ++ IL
Sbjct: 125 NGNIFQEKEYQEYEFATLREM---TRAYVKIQDGCNHFCSYCKIPFARGKSRSRKKENIL 181
Query: 170 EQVGLLCSKGVQEVVLTGTNVGSYGKD--RGSNIARLIKKLSQIAGLKRIRIGSLEPNQI 227
+++ L G +E++L G ++ +YG+D N L++ + +I LKR+RIGS+ P++I
Sbjct: 182 KEIEKLVEDGFKEIILIGIDLSAYGEDFEEKDNFESLLEDILRIKDLKRVRIGSVYPDKI 241
Query: 228 NDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIGTD 285
D F+EL + L HLHI+LQ D +L+ M R + ++ L + S K+ D
Sbjct: 242 TDRFIELFKNKKLMPHLHISLQSCDDTVLKNMRRNYGSSLIKKSLLKLKSKVKDMEFTAD 301
Query: 286 FIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAI 345
IVG P E +F+ + ++ + + +H F YS R+ T +S M + ++ K+R + +
Sbjct: 302 VIVGFPKEDEIMFQNTYDVIKEIEFSGLHIFQYSDREGTIASNMDGKIDVKTKKQRADRL 361
Query: 346 ----KDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFKALDQFFNPIKIKSDK 395
+++I K + L L+ LVE +K+GE+ Q + +K +SDK
Sbjct: 362 DSLKQEMIVDSRKKY------LEKSLEVLVEEEKNGEYFGYSQNYLRVKFRSDK 409
>ref|NP_646345.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB95393.1| (AP004827) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 448
Score = 204 bits (518), Expect = 2e-51
Identities = 137/421 (32%), Positives = 224/421 (52%), Gaps = 19/421 (4%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
M V F T GC+ N ++T+ + + K+ + E AD+ +IN+CTVTN D R
Sbjct: 1 MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQI 60
Query: 59 AKKMARL--DKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQE--KKRFFID 114
++ R D + TGC +T E+ E + V G ++ K+ + E K+R I+
Sbjct: 61 IRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPIN 120
Query: 115 ---DNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQ 171
+ ++N+ + V F +TRA +KIQEGC+ C +CIIP RG RS + K++EQ
Sbjct: 121 GVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQ 180
Query: 172 VGLLCSKGVQEVVLTGTNVGSYGKD-RGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDE 230
L + G +E+VLTG + G YG+D + N+A+L++ L I GL+RIRI S+E +Q+ DE
Sbjct: 181 ATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDE 240
Query: 231 FLELLEEDF-LEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFAIGTDFI 287
+++LE + +HLHI LQ D +L+RM R+ E L + A + A+ +D I
Sbjct: 241 VIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVI 300
Query: 288 VGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKD 347
VG PGE+ + F++ + + + +H F YS R TP++ M D + E +R +
Sbjct: 301 VGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNER---VHK 357
Query: 348 LIFHKNKAFRQLQLKLNTP-LKALVEVQKDGEFKALDQFFNPIKI--KSDKPLRASFLEI 404
LI N+ + K + L+ + E Q D E + N +K+ + D+ L +++
Sbjct: 358 LITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKV 417
Query: 405 K 405
K
Sbjct: 418 K 418
>ref|NP_213332.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O66772|Y474_AQUAE Hypothetical protein AQ_474
pir||H70342 conserved hypothetical protein aq_474 - Aquifex aeolicus
gb|AAC06733.1| (AE000691) hypothetical protein [Aquifex aeolicus]
Length = 410
Score = 204 bits (518), Expect = 2e-51
Identities = 136/424 (32%), Positives = 222/424 (52%), Gaps = 39/424 (9%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGADSAVRS--Y 58
KV F+T GCR N FDT ++ K + E AD+ +IN+CTVT G D + R Y
Sbjct: 2 KVAFETLGCRMNQFDTDLLKNKFIQKGYEVVSFEDMADVYVINTCTVTVGGDRSSRQAIY 61
Query: 59 AKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQE-----KKRFFI 113
K V+ TGC + +EL + + V G+ +K ++ +L+E +K+ +
Sbjct: 62 QAKRRNPKAIVVATGCYAQVNPQELAKLKEVDLVVGNTHKSELLKILEEYLERREKKVVV 121
Query: 114 DDNLENKHL---DTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILE 170
+ K + DT + E V R F+K+QEGC+ C +C+IP RG+ RS + KI+
Sbjct: 122 GEIFREKEVRNFDTVLYFEGV---RPFLKVQEGCNKFCTFCVIPYARGKVRSVDLEKIVH 178
Query: 171 QVGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDE 230
QV LL KG +EVVLTGT + YG D+G N+ L+ +L +I G++ IR+ S+ +++ E
Sbjct: 179 QVKLLAQKGFKEVVLTGTQLSQYGWDKGYNLYTLLTELIKIEGIELIRLSSMHIKEMDKE 238
Query: 231 FLELL-EEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASKN--FAIGTDFI 287
L+L+ E+ + H H++LQ + +LE M+R + E++ I +IGTD I
Sbjct: 239 LLKLIVSEEKIAPHFHLSLQSGSNRILELMDRGYTREEYEEVVNFIVENRPISSIGTDVI 298
Query: 288 VGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKD 347
VG P ES F++ ++ L+ +P++++H F YS R T +S + + K+R+ +K+
Sbjct: 299 VGFPTESEEDFQETYEFLKRIPISYMHIFPYSDRPFTKASKLKPKLPERIKKERVRILKE 358
Query: 348 LIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFKALDQFFNPIKIKSDKPLRASFLEIKEY 407
L K + F E K E +AL I+ ++ L ++++IK
Sbjct: 359 LDQKKRQEF--------------YEKNKGKELRAL-------VIEENRLLTENYIDIKRE 397
Query: 408 EIKE 411
KE
Sbjct: 398 GYKE 401
>ref|NP_372100.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374689.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB42668.1| (AP003134) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57738.1| (AP003362) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 448
Score = 203 bits (517), Expect = 3e-51
Identities = 137/421 (32%), Positives = 224/421 (52%), Gaps = 19/421 (4%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
M V F T GC+ N ++T+ + + K+ + E AD+ +IN+CTVTN D R
Sbjct: 1 MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQI 60
Query: 59 AKKMARL--DKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQE--KKRFFID 114
++ R D + TGC +T E+ E + V G ++ K+ + E K+R I+
Sbjct: 61 IRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPIN 120
Query: 115 ---DNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQ 171
+ ++N+ + V F +TRA +KIQEGC+ C +CIIP RG RS + K++EQ
Sbjct: 121 GVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQ 180
Query: 172 VGLLCSKGVQEVVLTGTNVGSYGKD-RGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDE 230
L + G +E+VLTG + G YG+D + N+A+L++ L I GL+RIRI S+E +Q+ DE
Sbjct: 181 ATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDE 240
Query: 231 FLELLEEDF-LEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFAIGTDFI 287
+++LE + +HLHI LQ D +L+RM R+ E L + A + A+ +D I
Sbjct: 241 VIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVI 300
Query: 288 VGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKD 347
VG PGE+ + F++ + + + +H F YS R TP++ M D + E +R +
Sbjct: 301 VGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNER---VHK 357
Query: 348 LIFHKNKAFRQLQLKLNTP-LKALVEVQKDGEFKALDQFFNPIKI--KSDKPLRASFLEI 404
LI N+ + K + L+ + E Q D E + N +K+ + D+ L +++
Sbjct: 358 LITLSNQLGKLYVSKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKV 417
Query: 405 K 405
K
Sbjct: 418 K 418
>ref|NP_242217.1| (NC_002570) BH1351~unknown conserved protein [Bacillus halodurans]
dbj|BAB05070.1| (AP001511) BH1351~unknown conserved protein [Bacillus halodurans]
Length = 448
Score = 201 bits (511), Expect = 1e-50
Identities = 120/361 (33%), Positives = 203/361 (55%), Gaps = 13/361 (3%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
M V F+T GC+ N ++T+ + + K + EQ AD+ +IN+CTVTN D R
Sbjct: 1 MATVAFQTLGCKVNHYETEAIWQLFKGEGYEKVDFEQMADVYVINTCTVTNTGDKKSRQV 60
Query: 59 AKKMARL--DKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFF---- 112
++ R D + TGC +T E+ + V G +++K+ +++ K+
Sbjct: 61 IRRAIRKNPDAVICVTGCYAQTSPAEVMAIPGVDIVVGTQDRKKMLEYIEQYKKERQPIN 120
Query: 113 -IDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQ 171
+ + ++++ + V F +TRA +KIQEGC+ C +CIIP RG RS + +++++Q
Sbjct: 121 GVGNIMKSRVYEELDVPAFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIKQ 180
Query: 172 VGLLCSKGVQEVVLTGTNVGSYGKD-RGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDE 230
L G +E+VLTG + G YG+D + ++ARL++ L Q+ GLKRIRI S+E +Q+ DE
Sbjct: 181 AEQLVQAGYKEIVLTGIHTGGYGEDLKDYSLARLLEDLEQVNGLKRIRISSIEASQLTDE 240
Query: 231 FLELLEEDF-LEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFAIGTDFI 287
+E+++ + +HLHI LQ D +L+RM R+ E LE + A A+ +D I
Sbjct: 241 VIEVIDRSTKVVRHLHIPLQSGSDTVLKRMRRKYTMAFFAERLERLREALPGLAVTSDVI 300
Query: 288 VGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKD 347
VG PGE+ + F++ + + + +H F YSKR TP++ M D V+ + +R++ +
Sbjct: 301 VGFPGETEAEFQETYDFIAKHKFSELHVFPYSKRTGTPAARMEDQVNEDVKNERVHRLIQ 360
Query: 348 L 348
L
Sbjct: 361 L 361
>sp|Q49573|Y16R_MYCIO Hypothetical 51.3 kDa protein in 16S RNA 5'region
Length = 438
Score = 200 bits (508), Expect = 3e-50
Identities = 136/386 (35%), Positives = 208/386 (53%), Gaps = 20/386 (5%)
Query: 8 TFGCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKKMARL 65
T GC+ NLF++ + +L + +AD+ IIN+CTVTN AD+ R Y K+
Sbjct: 14 TLGCKVNLFESNSIKNDLIMNGLVEVPFDSKADVYIINTCTVTNKADAKSRLYIKRAHVQ 73
Query: 66 DKEVLFTGCGVKTQ-GKELFEKGFLKGVFGHDNKEK----INALLQEKKRFFIDDNL--E 118
+K+ + G +Q K+L +K + G+ K IN L++++R + +N+ E
Sbjct: 74 NKDAIIIVAGCMSQVNKDLMDKLKISIQIGNKYKNSVFDLINEYLKKRERIYRVENILAE 133
Query: 119 NKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSK 178
K TT F+ TRAFIKIQ+GC+F C+YCIIP RGR RS + ILE++ L SK
Sbjct: 134 KKFEQTTQDFIFLENTRAFIKIQDGCNFMCSYCIIPFSRGRQRSQKMESILEKIKTLVSK 193
Query: 179 GVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEED 238
+E+VLTG N Y + + L+ ++++ G R+RI SLEP QINDE ++L+ +
Sbjct: 194 XFKEIVLTGVNTAGYLDENNNTFFDLLNNINKLDGDFRVRISSLEPFQINDEIIDLVTSN 253
Query: 239 FLE--KHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK----NFAIGTDFIVGHPG 292
+H HI LQ D +L++MNR+ T +L++ I +K NF TD+IVG P
Sbjct: 254 KKRFCQHWHICLQSGSDDVLKKMNRKYTTDEFYKLMQKILNKSPLTNFT--TDYIVGFPT 311
Query: 293 ESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLIFHK 352
E+ +K+ L + L +H F YSKR +T SS D ++ K R+ I L +
Sbjct: 312 ETDEDQKKSIDFLNKIKLYDMHIFPYSKRNNTRSSHYKD-INDSTKKDRVKEITKLNYLN 370
Query: 353 NKAFRQLQLKLNTPLKALVEVQKDGE 378
K L+ + + L E +K+ E
Sbjct: 371 KK--ENLKKYIGKTCEVLFEKKKEDE 394
>ref|NP_658342.1| (NC_003995) UPF0004, Uncharacterized protein family UPF0004
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 450
Score = 200 bits (508), Expect = 3e-50
Identities = 121/362 (33%), Positives = 204/362 (55%), Gaps = 14/362 (3%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
M V F T GC+ N ++T+ + + K + T E++AD+ +IN+CTVTN D R
Sbjct: 1 MSTVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQV 60
Query: 59 AKKMARL--DKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDN 116
++ R D + TGC +T E+ + V G ++EK+ ++E ++ N
Sbjct: 61 IRRAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPIN 120
Query: 117 LENKHLDTTMVSE-----FVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQ 171
+ T + E F +TRA +KIQEGC+ C +CIIP RG RS + +++++Q
Sbjct: 121 AVRNIMKTRVYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQ 180
Query: 172 VGLLCSKGVQEVVLTGTNVGSYGKD-RGSNIARLIKKL-SQIAGLKRIRIGSLEPNQIND 229
L G +E+VLTG + G YG+D + N+A L++ + +++ GLKR+RI S+E +QI+D
Sbjct: 181 AQQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVGGLKRLRISSIEASQISD 240
Query: 230 EFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFAIGTDF 286
E +E+L++ + + +HLHI LQ + +L+RM R+ + +E L+ + A AI +D
Sbjct: 241 EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDV 300
Query: 287 IVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIK 346
IVG PGE+ F + + ++ + +H F YSKR TP++ M D V + R++ +
Sbjct: 301 IVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLI 360
Query: 347 DL 348
+L
Sbjct: 361 EL 362
>ref|NP_622614.1| (NC_003869) 2-methylthioadenine synthetase [Thermoanaerobacter
tengcongensis]
gb|AAM24218.1| (AE013061) 2-methylthioadenine synthetase [Thermoanaerobacter
tengcongensis]
Length = 437
Score = 195 bits (496), Expect = 7e-49
Identities = 131/430 (30%), Positives = 232/430 (53%), Gaps = 25/430 (5%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQE--ADIIIINSCTVTNGADSAVRSY 58
M KV F T GC+ N ++T+VM+E + + + + AD+ +IN+C+VT +D R
Sbjct: 1 MAKVAFYTLGCKVNQYETEVMAELFRKAGYEIVDFDEIADVYVINTCSVTARSDMKSRQM 60
Query: 59 AKKMARLDKE--VLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQE-----KKRF 111
+K + + V+ GC V+ E+F + V G +K+KI L+++ KK
Sbjct: 61 IRKTRNKNPDAIVVAVGCYVQVSPDEVFSMPEVDIVIGTKDKDKIVDLVKDFENEKKKTK 120
Query: 112 FIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQ 171
I++ ++ + + ++ + +TRA+IKI++GC+ C YCIIP RG RS + I+++
Sbjct: 121 LIENIMKQRDYEEFGITGYTERTRAYIKIEDGCNQYCTYCIIPYARGPVRSRKPENIIKE 180
Query: 172 VGLLCSKGVQEVVLTGTNVGSYGKD-RGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDE 230
V G +E+VLTG ++ SYG+D + + +IK + ++ G++RIRI S+EP + ++
Sbjct: 181 VKKYAEHGYKEIVLTGIHIASYGRDLKNIGLLDVIKMVHEVEGIERIRISSIEPTFLTED 240
Query: 231 FL-ELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIGTDFI 287
+ EL + +H H++LQ D L+RM R+ +E++E + + AI TD +
Sbjct: 241 VVKELANLPKMCRHYHVSLQSGCDETLKRMGRKYTASEYKEVVERLRRYIPDVAITTDIM 300
Query: 288 VGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPS----SLMTDSVSLEDSKK--R 341
VG PGE+ FEK++K E + +H F YS+RK T + + + + V E SKK +
Sbjct: 301 VGFPGETEEEFEKSYKFAEEICFAKMHVFKYSRRKGTRAYNFPNQVPNKVKEERSKKLLQ 360
Query: 342 LNAIKDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFKALDQFFNPIKIKSD-KPLRAS 400
L+ + + F + R +++ +K L DG + L + + +K + + LR
Sbjct: 361 LSKVCERKFKERFLNRTVEVLFEQKVKDL-----DGYVEGLTDNYLSVAVKGELENLRNR 415
Query: 401 FLEIKEYEIK 410
L ++ EIK
Sbjct: 416 ILPVRVKEIK 425
>ref|NP_347917.1| (NC_003030) Fe-S oxidoreductases [Clostridium acetobutylicum]
gb|AAK79257.1|AE007641_3 (AE007641) Fe-S oxidoreductases [Clostridium acetobutylicum]
Length = 436
Score = 192 bits (489), Expect = 5e-48
Identities = 124/425 (29%), Positives = 225/425 (52%), Gaps = 17/425 (4%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
KV F T GCR N ++++ M+E + +++AD +IN+CTVTN D R
Sbjct: 2 KVAFITLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMIS 61
Query: 61 KMARLDKEVLFT--GCGVKTQGKELFEKGFLKGVFGHDNKEKI----NALLQEKKRFF-I 113
+ + +K+ + GC + + +++ E + V G NK I N ++E+ + +
Sbjct: 62 RARKANKDAVIAAVGCYSQVEPEKVAEIEGVDIVLGTKNKGDIIHYVNKFIEERNQIVNV 121
Query: 114 DDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
D +K + + E+ KTRAF+KIQ+GC+ C+YC+IP RG S K++ ++
Sbjct: 122 KDVFTDKKFEDLNIDEYQDKTRAFLKIQDGCNRFCSYCLIPYARGGVCSKNPEKVIGEIK 181
Query: 174 LLCSKGVQEVVLTGTNVGSYGKD-RGS-NIARLIKKLSQIAGLKRIRIGSLEPNQINDEF 231
L G +E++L+G ++ SYG D +G N+ +I+K QI G++RIRIGS+EP +++
Sbjct: 182 RLAEHGFKEIILSGIHIASYGDDLKGDWNLISIIEKAEQIDGIERIRIGSIEPRFFDEDT 241
Query: 232 LELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIGTDFIV 288
+ ++ + H H++LQ LERMNR+ + +E++ + + +I TD IV
Sbjct: 242 ISKIKNMKKMCPHFHLSLQSGCTETLERMNRKYTAEEYKEIVYKLRENISDVSITTDVIV 301
Query: 289 GHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDL 348
G PGE+ FEK + L+ + L +H F YS R+ T ++ M + ++ KR + +L
Sbjct: 302 GFPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQINGNVKDKRSAELIEL 361
Query: 349 IFHKNKAF--RQLQLKLNTPLKALVEVQKDGEFKALDQFFNPIKIKSDKPLRASFLEIKE 406
K F + L +++ + +E +D ++ + + +KS + + L++K
Sbjct: 362 DKINEKKFMSKFLDREMDVLFEKKLEENED-LYEGYTPNYIKVVVKSSEDISRKILKVKL 420
Query: 407 YEIKE 411
EI++
Sbjct: 421 TEIQD 425
>ref|NP_390421.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|P54462|YQEV_BACSU Hypothetical protein yqeV
pir||E69952 conserved hypothetical protein yqeV - Bacillus subtilis
dbj|BAA12468.1| (D84432) YqeV [Bacillus subtilis]
dbj|BAA12080.1| (D83717) YqeV [Bacillus subtilis]
emb|CAB14485.1| (Z99117) similar to hypothetical proteins [Bacillus subtilis]
Length = 451
Score = 192 bits (488), Expect = 6e-48
Identities = 124/422 (29%), Positives = 220/422 (51%), Gaps = 17/422 (4%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
M V F T GC+ N ++T+ + + K+ + EQ AD+ +IN+CTVTN D R
Sbjct: 1 MATVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQV 60
Query: 59 AKKMARLDKE--VLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFF---- 112
++ R + + + TGC +T E+ + V G ++EK+ + + +
Sbjct: 61 IRRAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPIN 120
Query: 113 -IDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQ 171
+ + ++ + + V F +TRA +KIQEGC+ C +CIIP RG RS + ++++Q
Sbjct: 121 GVSNIMKARVYEELDVPAFTDRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQ 180
Query: 172 VGLLCSKGVQEVVLTGTNVGSYGKD-RGSNIARLIKKL-SQIAGLKRIRIGSLEPNQIND 229
L G +E+VLTG + G YG+D + N A+L+ +L +++ G+KRIRI S+E +QI D
Sbjct: 181 AQQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDTRVEGVKRIRISSIEASQITD 240
Query: 230 EFLELLE-EDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFAIGTDF 286
E +E+L+ D + HLHI +Q + +L+RM R+ + + L + A A+ +D
Sbjct: 241 EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVTSDV 300
Query: 287 IVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVS---LEDSKKRLN 343
IVG PGE+ F + + ++ + +H F YSKR TP++ M D V + RL
Sbjct: 301 IVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVHRLI 360
Query: 344 AIKDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFKALDQFFNPIKIKSDKPLRASFLE 403
A+ D + + + + ++ P +A E +++ F + + K + + ++
Sbjct: 361 ALSDQLAKEYASQYENEVLEIIPEEAFKETEEENMFVGYTDNYMKVVFKGTEDMIGKIVK 420
Query: 404 IK 405
+K
Sbjct: 421 VK 422
>ref|NP_562941.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81731.1| (AP003192) conserved hypothetical protein [Clostridium perfringens]
Length = 434
Score = 187 bits (476), Expect = 2e-46
Identities = 126/430 (29%), Positives = 217/430 (50%), Gaps = 19/430 (4%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
KV F T GCR N ++++ M+E + + + AD+ ++N+C+VTN D R
Sbjct: 2 KVAFATLGCRVNTYESEAMTEKFVREGYEVVDFNEMADVYVVNTCSVTNMGDKKSRQIIG 61
Query: 61 KMARLDKEVLFT--GCGVKTQGKELFEKGFLKGVFGHDNKEKI-----NALLQEKKRFFI 113
+ R + E + GC + E+ + V G NK +I A + K++ +
Sbjct: 62 RARRQNPEAIIAVVGCYAQIAPTEVSGIEGVDVVLGSRNKGEIVYYVNKARDEGKQQVKV 121
Query: 114 DDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
L+NK + + E+ KTRAF+KIQ+GC+ C YC+IP RG S + +K+L+++
Sbjct: 122 GAVLKNKVFEDLKIEEYNNKTRAFLKIQDGCNRFCAYCLIPYTRGSVCSKDPKKVLDEIR 181
Query: 174 LLCSKGVQEVVLTGTNVGSYGKDRGSNI--ARLIKKLSQIAGLKRIRIGSLEPNQINDEF 231
L G +E++L+G + SYG D + L++++ +I G++R+RIGS++P ++
Sbjct: 182 SLAEHGFKEIILSGIHTASYGVDLDEKVTLVDLLEEIEKIDGIERVRIGSIDPTFFTEDV 241
Query: 232 L-ELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIV 288
+ +L L H H++LQ D L+RMNRR K +++ + K + +I TD IV
Sbjct: 242 VRRILALKKLCPHFHLSLQSGCDATLKRMNRRYTAKEYEDIVNLLRDKIEDVSITTDVIV 301
Query: 289 GHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDL 348
G PGE+ FE+ ++ L+ + L+ H F YS RK T + M + V +R + +L
Sbjct: 302 GFPGETDEEFEETYEFLKRIALSKTHIFKYSPRKGTRAENMENQVDGNKKDERSKKLIEL 361
Query: 349 IFHKNKAFRQLQLKLNTPLKALVEVQ-KDGEFKALDQFFNPIKIKSDKPLRASFLEIK-- 405
KAF + + + EV+ G + + + + K+D + L +K
Sbjct: 362 NRINEKAFAEKYIGEVIDVLFEEEVELGSGVYTGYTRNYIKVNAKADCNVSGKILNVKIN 421
Query: 406 --EYEIKERE 413
E E+ E E
Sbjct: 422 SFEGEVAEGE 431
>gb|AAD02057.1| (AF036764) unknown [Clostridium acetobutylicum]
Length = 386
Score = 187 bits (476), Expect = 2e-46
Identities = 115/368 (31%), Positives = 198/368 (53%), Gaps = 14/368 (3%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
KV F T GCR N ++++ M+E + +++AD +IN+CTVTN D R
Sbjct: 2 KVAFITLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMIS 61
Query: 61 KMARLDKEVLFT--GCGVKTQGKELFEKGFLKGVFGHDNKEKI----NALLQEKKRFF-I 113
+ + +K+ + GC + + +++ E + V G NK I N ++E+ + +
Sbjct: 62 RARKANKDAVIAAVGCYSQVEPEKVAEIEGVDIVLGTKNKGDIIHYVNKFIEERNQIVNV 121
Query: 114 DDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
D +K + + E+ KTRAF+KIQ+GC+ C+YC+IP RG S K++ ++
Sbjct: 122 KDVFTDKKFEDLNIDEYQDKTRAFLKIQDGCNRFCSYCLIPYARGGVCSKNPEKVIGEIK 181
Query: 174 LLCSKGVQEVVLTGTNVGSYGKD-RGS-NIARLIKKLSQIAGLKRIRIGSLEPNQINDEF 231
L G +E++L+G ++ SYG D +G N+ +I+K QI G++RIRIGS+EP +++
Sbjct: 182 RLAEHGFKEIILSGIHIASYGDDLKGDWNLISIIEKAEQIDGIERIRIGSIEPRFFDEDT 241
Query: 232 LELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIGTDFIV 288
+ ++ + H H++LQ LERMNR+ + +E++ + + +I TD IV
Sbjct: 242 ISKIKNMKKMCPHFHLSLQSGCTETLERMNRKYTAEEYKEIVYKLRENISDVSITTDVIV 301
Query: 289 GHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDL 348
G PGE+ FEK + L+ + L +H F YS R+ T ++ M + ++ KR + +L
Sbjct: 302 GFPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQINGNVKDKRSAELIEL 361
Query: 349 IFHKNKAF 356
K F
Sbjct: 362 DKINEKKF 369
>ref|NP_220797.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZDB6|Y416_RICPR Hypothetical protein RP416
pir||G71699 hypothetical protein RP416 - Rickettsia prowazekii
emb|CAA14873.1| (AJ235271) unknown [Rickettsia prowazekii]
Length = 421
Score = 183 bits (464), Expect = 4e-45
Identities = 120/392 (30%), Positives = 202/392 (50%), Gaps = 21/392 (5%)
Query: 8 TFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKKMARL-- 65
TFGCR N+++++++ +NL+ ++ I N+C VT A+ R +K +
Sbjct: 16 TFGCRLNIYESEIIRKNLELSGLD------NVAIFNTCAVTKSAEKQARQAIRKAKKNNP 69
Query: 66 DKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENKHLDTT 125
D +++ TGC + K + V G++ K + ++ ++D + K
Sbjct: 70 DLKIIVTGCSAQANPKMYGNMSEVDKVIGNEEKLLSHYYQITDQKISVNDIMSVKETACH 129
Query: 126 MVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVL 185
+VS F GK+RAFI++Q GCD +C +CIIP VRG++RS I+ QV L KG +EVV+
Sbjct: 130 LVSSFDGKSRAFIQVQNGCDHNCTFCIIPYVRGKSRSIPIGTIVAQVKHLVLKGFKEVVI 189
Query: 186 TGTNVGSYGKD--RGSNIARLIKK-LSQIAGLKRIRIGSLEPNQINDEFLELLE-EDFLE 241
TG +V +YG D A++IK+ L + LKR+R+ S++ +I+DE EL+ + +
Sbjct: 190 TGVDVTAYGSDLPGSPTFAQMIKRVLKLVPELKRMRLSSIDIAEIDDELFELIAYSERIM 249
Query: 242 KHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIGTDFIVGHPGESGSVFE 299
H HI++Q D++L+RM RR+ S E + + + + G D I G P E+ +FE
Sbjct: 250 PHFHISVQSGDDMILKRMKRRHNRASVIEFCQKLRAIRPEVSFGADIIAGFPTETNEMFE 309
Query: 300 KAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQL 359
K + L ++H F YS+R+ TP++ M V K+R + + F QL
Sbjct: 310 NTRKLILEAELQYLHVFPYSEREGTPAARM-PQVPQNIRKERAKIL------RQDGFNQL 362
Query: 360 QLKLNTPLKALVEVQKDGEFKALDQFFNPIKI 391
+ VE+ + A + F P+K+
Sbjct: 363 NEFFKRHIGQKVELLIENNNIAHTENFIPVKL 394
>ref|NP_228639.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
sp|Q9WZT7|Y830_THEMA Hypothetical protein TM0830
pir||B72328 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35912.1|AE001750_6 (AE001750) conserved hypothetical protein [Thermotoga maritima]
Length = 434
Score = 183 bits (464), Expect = 4e-45
Identities = 113/358 (31%), Positives = 194/358 (53%), Gaps = 15/358 (4%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFS-TTLEEQEADIIIINSCTVTNGADSAVRSYA 59
MK V +TFGC+ N ++++ M+E L+ L + A I+NSC VT + V+
Sbjct: 1 MKTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGNAAYYIVNSCAVTKEVEKKVKRLI 60
Query: 60 KKMARLDK--EVLFTGCGVKTQGKELFEKGFLKGVFGHDNK----EKINALLQEKKRFFI 113
K + +K +++ TGC + E + V G D K + IN+L K++ +
Sbjct: 61 KSIRNRNKNAKIILTGCFAQLSPDEAKNLP-VDMVLGIDEKKHIVDHINSL-NGKQQVVV 118
Query: 114 DDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRG-RARSFEERKILEQV 172
+ + + + F +TR++IK+++GCD C YC I RG R RS E+
Sbjct: 119 SE--PGRPVYEKVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEF 176
Query: 173 GLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFL 232
+ KG +E+V+TG N+G YGKD GS++A L+K + ++ G R+R+ S+ +NDE +
Sbjct: 177 AEMVMKGYKEIVITGVNLGKYGKDMGSSLAELLKVIEKVPGDYRVRLSSINVEDVNDEIV 236
Query: 233 ELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIGTDFIVG 289
+ + + L HLHI++Q D +L+RM R+ + +++ + S +F+I TD IVG
Sbjct: 237 KAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDFSITTDIIVG 296
Query: 290 HPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKD 347
PGE+ + F++ + +E + + +H F +S R TP+S M V K+RL+ +K+
Sbjct: 297 FPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKERLDVLKE 354
>ref|NP_539050.1| (NC_003317) Fe-S OXIDOREDUCTASE [Brucella melitensis]
gb|AAL51314.1| (AE009456) Fe-S OXIDOREDUCTASE [Brucella melitensis]
Length = 447
Score = 183 bits (464), Expect = 4e-45
Identities = 116/370 (31%), Positives = 192/370 (51%), Gaps = 19/370 (5%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
+ V TFGCR N ++++VM + L + II N+C VT A R +
Sbjct: 20 LMSVEIVTFGCRLNTYESEVMKREAD--AAGLGTLKDGAIIFNTCAVTAEAVRQARQAIR 77
Query: 61 KMARL--DKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINAL-------LQEKKRF 111
K R D ++ TGC +T+ G + V G++ K K N+ + + ++
Sbjct: 78 KARRENPDARIIVTGCAAQTEADNFAAMGEVDLVLGNEEKLKSNSYRMLPDFGVNQFEKV 137
Query: 112 FIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQ 171
++D +E + + MV G+ RAF+++Q GCD C +CIIP RG +RS +++Q
Sbjct: 138 RVNDIMEVRETASHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVDQ 197
Query: 172 VGLLCSKGVQEVVLTGTNVGSYGKDRGSN--IARLIKK-LSQIAGLKRIRIGSLEPNQIN 228
V L G EVVLTG ++ SYG D SN + +L+K L+Q+ L+R+R+ S++ + +
Sbjct: 198 VKRLVGNGYAEVVLTGVDMTSYGPDLPSNLRLGKLVKTVLAQVPDLQRLRLSSIDSIEAD 257
Query: 229 DEFLE-LLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIGTD 285
++ +E + E L HLH++LQ D++L+RM RR+ +T + + G D
Sbjct: 258 EDLMEAIASEKRLMPHLHLSLQAGDDMILKRMKRRHLRDDSIRFCQTARALRPDIVFGAD 317
Query: 286 FIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD--SVSLEDSKKRLN 343
I G P E+ +F+ + K +E LTH+H F YS R+ TP++ M +++ RL
Sbjct: 318 IIAGFPTETEEMFQNSLKIVEECGLTHLHVFPYSPREGTPAARMPQVRREIVKERAARLR 377
Query: 344 AIKDLIFHKN 353
A D + K+
Sbjct: 378 AEGDRAYEKH 387
>ref|NP_105219.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51005.1| (AP003003) hypothetical protein [Mesorhizobium loti]
Length = 446
Score = 176 bits (446), Expect = 5e-43
Identities = 108/338 (31%), Positives = 176/338 (51%), Gaps = 19/338 (5%)
Query: 8 TFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKKMARLDK 67
TFGCR N ++++VM + S L + +I N+C VT A R +K AR D
Sbjct: 26 TFGCRLNTYESEVMRREAE--SAGLGALQGGAVIFNTCAVTGEAVRQARQAIRK-ARRDN 82
Query: 68 ---EVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINAL-------LQEKKRFFIDDNL 117
++ TGC +T+ ++ + V G++ K K N+ + + ++ ++D
Sbjct: 83 PGARIIVTGCAAQTEPEKFAAMDEVDLVLGNEEKLKANSYRALPDFGVNDTEKARVNDIF 142
Query: 118 ENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCS 177
+ MV G+ RAF+++Q GCD C +CIIP RG +RS ++EQV L
Sbjct: 143 SVRETAGHMVDAIEGRARAFVQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVEQVKRLAG 202
Query: 178 KGVQEVVLTGTNVGSYGKD--RGSNIARLIKK-LSQIAGLKRIRIGSLEPNQINDEFLE- 233
G E+VLTG ++ S+G D + RL+K L Q+ +KR+R+ S++ + +D+ L+
Sbjct: 203 NGYAEIVLTGVDMTSFGADLPGAPKLGRLVKTILKQVPDVKRLRLSSIDSIEADDDLLDA 262
Query: 234 LLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIGTDFIVGHP 291
+ E L HLH++LQ D++L+RM RR+ E + G D I G P
Sbjct: 263 IATEPRLMPHLHLSLQSGDDMILKRMKRRHLRDQSIRFCEDVRKLRPEIVFGADIIAGFP 322
Query: 292 GESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329
E+ ++FE + K +E LTH+H F +S R+ TP++ M
Sbjct: 323 TETDAMFENSIKIVEECGLTHLHVFPFSPREGTPAARM 360
>ref|NP_360217.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL03118.1| (AE008618) unknown [Rickettsia conorii]
Length = 421
Score = 174 bits (442), Expect = 1e-42
Identities = 125/417 (29%), Positives = 210/417 (49%), Gaps = 29/417 (6%)
Query: 8 TFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKKMARL-- 65
TFGCR N+++++++ +NL+ ++ I N+C VT A+ R ++ +
Sbjct: 16 TFGCRLNIYESEIIRKNLELSGID------NVAIFNTCAVTKAAEKQARQAIRRAKKNNP 69
Query: 66 DKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENKHLDTT 125
D +++ TGC +T + + V G++ K N + ++D + K +
Sbjct: 70 DLKIIVTGCSAQTSPQMYGNMPEVDKVIGNEEKLLPNYYQITDAKITVNDIMSVKETASH 129
Query: 126 MVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVL 185
+VS F K+RAFI++Q GCD C +CIIP RG++RS I EQV L G +EVV
Sbjct: 130 LVSSFDCKSRAFIQVQNGCDHFCTFCIIPYGRGKSRSVAIGAIAEQVKHLVLNGFKEVVF 189
Query: 186 TGTNVGSYGKD--RGSNIARLIKK-LSQIAGLKRIRIGSLEPNQINDEFLELLE-EDFLE 241
TG +V +YG D A++IK+ L+ + LKR+R+ S++ +I+DE EL+ + +
Sbjct: 190 TGVDVTAYGSDLPGSPTFAQMIKRVLNLVPELKRLRLSSIDVAEIDDELFELIAYSERIM 249
Query: 242 KHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIGTDFIVGHPGESGSVFE 299
H HI+LQ D++L+RM RR+ + E + + + G D I G P E+ +FE
Sbjct: 250 PHFHISLQAGDDMILKRMKRRHNRANVIEFCRKLRAIRPEVSFGADIIAGFPTETPEMFE 309
Query: 300 KAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQL 359
K + L ++H F YS+R+ TP++ M V K+R + + + QL
Sbjct: 310 NTRKLISEAELQYLHVFPYSEREGTPAARM-PQVPKNIRKERAAIL------RQEGQNQL 362
Query: 360 QLKLNTPLKALVEVQKDGEFKALDQFFNPIKIKSDKPL------RASFLEIKEYEIK 410
+ VE+ + A + F P+K+ DKPL +A + I+E +K
Sbjct: 363 TEFFKKHIGQKVELLVENNNIAHTENFIPVKL--DKPLEIGQIFKAKLVAIEENYMK 417
>ref|NP_660758.1| (NC_004061) hypothetical 53.7 kD protein in cutE-glnX [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gb|AAM67969.1| (AE014118) hypothetical 53.7 kD protein in cutE-glnX [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 439
Score = 173 bits (438), Expect = 4e-42
Identities = 113/382 (29%), Positives = 202/382 (52%), Gaps = 21/382 (5%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMS---ENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRS 57
MK +Y KT+GC+ N +D+ +++ E + T E ++ADI+I+N+C++ A V
Sbjct: 1 MKYIYIKTWGCQMNEYDSSMITVFLEKTGRYLITKEVEKADILILNTCSIREKAQEKVFH 60
Query: 58 YAKKMARL-----DKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALL---QEK 108
+ +L D + GC +GKE+F++ ++ VFG K+ ++ ++
Sbjct: 61 QLGRWKKLKNKKPDVIIAVGGCVATQEGKEIFKRANYVDIVFGTQTLHKLAQMIDKVEKN 120
Query: 109 KRFFIDDNLEN-KHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERK 167
+RF ID + + + ++ + G T A I I EGC+ C++C++P RG S
Sbjct: 121 RRFMIDISFPQLEKFNYSLEPKKTGYT-ASISIMEGCNKYCSFCVVPYTRGHEISRPSDD 179
Query: 168 ILEQVGLLCSKGVQEVVLTGTNVGSY-GKDRGSNI---ARLIKKLSQIAGLKRIRIGSLE 223
IL ++ +L GV+E+ L G NV +Y G+ I + L++ +S+I G+ RIR +
Sbjct: 180 ILLEISILAENGVREINLLGQNVNAYRGRTFNGKICFFSELLRLVSEIDGIDRIRFTTSN 239
Query: 224 PNQINDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNF 280
P + D+ +E+ ++ L LH+ +Q + +L+ M R T+ +++E + A N
Sbjct: 240 PLEFTDDIIEVYQDTPKLVSFLHLPVQSGSNRILQLMKRSYTTEEYEKIIEKLILARSNI 299
Query: 281 AIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKK 340
I +DFIVG P ES F+K ++ + FIYS R TP+S M D++ L++ KK
Sbjct: 300 QISSDFIVGFPSESEEDFQKTINFIKKINFDMSFSFIYSSRPGTPASEMKDNIDLQEKKK 359
Query: 341 RLNAIKDLIFHKNKAFRQLQLK 362
RL +++ I + ++ + LK
Sbjct: 360 RLYTLQNCINKQTMSWSRKMLK 381
>ref|NP_371816.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374408.1| (NC_002745) conserved hypotehtical protein [Staphylococcus aureus
subsp. aureus N315]
ref|NP_645992.1| (NC_003923) conserved hypotehtical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB42387.1| (AP003133) conserved hypotehtical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57454.1| (AP003361) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB95040.1| (AP004826) conserved hypotehtical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 514
Score = 169 bits (428), Expect = 6e-41
Identities = 120/432 (27%), Positives = 213/432 (48%), Gaps = 35/432 (8%)
Query: 7 KTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKKMAR 64
KT+GC+ N DT+V++ L+ + T + AD+I+IN+C + A++ V S +
Sbjct: 73 KTYGCQMNAHDTEVIAGILEALGYQATTDINTADVILINTCAIRENAENKVFSEIGNLKH 132
Query: 65 LDKE---VLFTGCGVKTQGKELFEKGFLKG------VFGHDNKEKINALLQE---KKRFF 112
L KE +L CG +Q + + K LK +FG N + +L+E K
Sbjct: 133 LKKERPDILIGVCGCMSQEESVVNK-ILKSYQNVDMIFGTHNIHHLPEILEEAYLSKAMV 191
Query: 113 IDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQV 172
++ + + + G +A++ I GCD C YCI+P RG+ RS I+++V
Sbjct: 192 VEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIDEV 251
Query: 173 GLLCSKGVQEVVLTGTNVGSYGKDRGS---NIARLIKKLSQIAGLKRIRIGSLEPNQIND 229
L +G +E+ L G NV SYGKD ++ L++ +S+IA + R+R + P D
Sbjct: 252 RELAREGYKEITLLGQNVNSYGKDLQDIEYDLGDLLQAISKIA-IPRVRFTTSHPWDFTD 310
Query: 230 EFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDF 286
++++ E + H+H+ +Q ++ +L+ M R+ +S +L++ I + N A+ TD
Sbjct: 311 HMIDVISEGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVKRIKDRIPNVALTTDI 370
Query: 287 IVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIK 346
IVG+P ES FE+ + + H + ++YS+R TP++ M D+V L K+RL +
Sbjct: 371 IVGYPNESEEQFEETLTLYDEVGFEHAYTYLYSQRDGTPAAKMKDNVPLNVKKERLQRLN 430
Query: 347 DLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFKALDQFF-------NPIKIKSDKPLRA 399
+ H + Q+ ++ V V +G K DQ + K+ K +
Sbjct: 431 KKVGHYS------QIAMSKYEGQTVTVLCEGSSKKDDQVLAGYTDKNKLVNFKAPKEMIG 484
Query: 400 SFLEIKEYEIKE 411
+E++ E K+
Sbjct: 485 KLVEVRIDEAKQ 496
>ref|NP_376401.1| (NC_003106) 418aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB65510.1| (AP000982) 418aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 418
Score = 169 bits (427), Expect = 7e-41
Identities = 112/349 (32%), Positives = 180/349 (51%), Gaps = 19/349 (5%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQ--EADIIIINSCTVTNGADSAVRSYAK 60
KVY +T+GC N D+ +M LKD + + +AD+I++N+C V + ++ K
Sbjct: 2 KVYIETYGCALNKGDSYIMMTLLKDRGHDIVDSYNQADVIVLNTCAVRLETEERMKQRIK 61
Query: 61 KMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKR-FFIDDNLEN 119
++ ++ K+++ GC V +Q + + G + +KI ++ KR F++ E+
Sbjct: 62 ELKKIGKKLIIAGCLVSSQPALVMSLAPESSIVGAQSIDKIVEAVESNKRGIFLE---ES 118
Query: 120 KHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKG 179
K L T + F GK + I I +GC DCN+CI R + RS+ R I+ V KG
Sbjct: 119 KELVTPRI--FEGKI-SIIPIADGCAGDCNFCITKLARKKLRSYPPRNIVNAVKEAVQKG 175
Query: 180 VQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEP----NQINDEFLELL 235
E+ LT + +YG D N+ L+K++ +I G IRIG + P QI DE LE++
Sbjct: 176 AVEIELTAQDTAAYGLDINYNLVELLKEILEIEGNYMIRIGMMTPELAFKQI-DEILEII 234
Query: 236 EEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIVGHPGE 293
++ + K LH+ +Q D +L+ MNR+ REL++ I K I TD I+GHPGE
Sbjct: 235 KDKRVYKFLHLPVQSGDDRVLKLMNRKYTVDEYRELVKEIRDKIPIVNITTDIIIGHPGE 294
Query: 294 SGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM---TDSVSLEDSK 339
F+ ++ + IH +YS R +T S+ M DS+ E K
Sbjct: 295 DDEAFQNTINLIKEIKFERIHLAMYSIRPNTRSASMPQVPDSIKKERMK 343
>ref|NP_387344.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC47817.1| (AL591793) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 424
Score = 168 bits (426), Expect = 9e-41
Identities = 109/363 (30%), Positives = 182/363 (50%), Gaps = 27/363 (7%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
M V TFGCR N ++++VM + + +++N+C VT A R +
Sbjct: 1 MSGVEVITFGCRLNTYESEVMRAEAEKAGLN------NAVLVNTCAVTAEAVRQARQAIR 54
Query: 61 KMARLDKE--VLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINAL---------LQEKK 109
+ R + ++ TGC +T+ + E + V G N+EK+ ++ + ++
Sbjct: 55 RARRENPHARIIVTGCAAQTEKETFAEMAEVDAVLG--NEEKLASVSYRSLPDFGVSAEE 112
Query: 110 RFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKIL 169
+ ++D + + MV G RAFI++Q GCD C +CIIP RG +RS ++
Sbjct: 113 KLRVNDIMSVRATAPQMVKHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVV 172
Query: 170 EQVGLLCSKGVQEVVLTGTNVGSYGKD-RGSNIARLIKK--LSQIAGLKRIRIGSLEPNQ 226
+Q L G +E+VLTG + SYG D G+ L+ K L Q+ + R+R+ S++ +
Sbjct: 173 DQARRLAESGYREIVLTGVDATSYGADLPGTPTLGLLAKTLLKQVPEILRLRLSSIDSIE 232
Query: 227 INDEFLELL-EEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFAIG 283
+ L+L+ EE HLH++LQH DL+L+RM RR+ + R + + ++G
Sbjct: 233 ADGHLLDLIAEEPRFMPHLHLSLQHGDDLILKRMKRRHSSADARAFCDEVRRLRPGISLG 292
Query: 284 TDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM--TDSVSLEDSKKR 341
D I G P E+ +FE A + E + H+H F YS R TP++ M D +++ R
Sbjct: 293 ADMIAGFPTETEPMFENAMRLAEDCGIAHLHVFPYSPRPGTPAARMPQLDRALVKERAAR 352
Query: 342 LNA 344
L A
Sbjct: 353 LRA 355
>ref|NP_622974.1| (NC_003869) 2-methylthioadenine synthetase [Thermoanaerobacter
tengcongensis]
gb|AAM24578.1| (AE013095) 2-methylthioadenine synthetase [Thermoanaerobacter
tengcongensis]
Length = 471
Score = 166 bits (421), Expect = 4e-40
Identities = 125/400 (31%), Positives = 210/400 (52%), Gaps = 28/400 (7%)
Query: 2 KKVYF--KTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVR- 56
K+VY+ +T+GC+ N+ D++ ++ L++ + T + ++AD+++ N+C V A+ V
Sbjct: 29 KEVYYHIETYGCQMNVHDSEKLAGMLEEMGYKYTEDLEKADVLLFNTCAVREHAEVRVLG 88
Query: 57 --SYAKKMARLDKEVLFTGCGVKTQGKELFEK-----GFLKGVFGHDNKEKINALLQE-- 107
S K++ + ++ G Q K + E + VFG N K LL +
Sbjct: 89 RVSQIKELKNRNPNLIIGISGCMMQEKHIVEAIREKYPHVDIVFGTHNIYKFPELLWQAL 148
Query: 108 KKRFFIDDNLEN-KHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEER 166
R + D +EN +++ + +A++ I GC+ C YCI+P RGR +S
Sbjct: 149 NSRVQVIDVIENTQNVIEGLPIRRDSNLKAWVNIIYGCNNFCTYCIVPYTRGREKSRRPE 208
Query: 167 KILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGS--NIARLIKKLSQIAGLKRIRIGSLEP 224
I+ +V L KG +E+ L G NV SYGKD G N A+L+ L+ I G++RIR + P
Sbjct: 209 DIIAEVKELAEKGYKEITLLGQNVNSYGKDLGGDINFAKLLYMLNDIKGIERIRFMTSHP 268
Query: 225 NQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFA 281
I+DE + + + D + +HLH+ +Q + +L+RMNRR + E+++ + + + A
Sbjct: 269 KDISDELIYAMRDLDKVCEHLHLPVQAGSNKILKRMNRRYTREHYLEIIDKVRANIPDIA 328
Query: 282 IGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKR 341
I TD IVG PGE+ F + +E + + F+YSKR TP++ M D V E K R
Sbjct: 329 ITTDIIVGFPGETEEDFFQTLDLVERVRFDGAYTFMYSKRAGTPAASMPDQVDDEVKKDR 388
Query: 342 LNAIKDLIFHKNKAFRQLQLKLNTPLKA-LVEVQKDGEFK 380
L + +L +NK + L+ + LK +VEV +G K
Sbjct: 389 LIRLIEL---QNK----ISLEKSAELKGKVVEVLIEGVSK 421
>ref|NP_243238.1| (NC_002570) BH2372~unknown conserved protein [Bacillus halodurans]
dbj|BAB06091.1| (AP001515) BH2372~unknown conserved protein [Bacillus halodurans]
Length = 538
Score = 166 bits (419), Expect = 6e-40
Identities = 118/398 (29%), Positives = 199/398 (49%), Gaps = 26/398 (6%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
KK +T+GC+ N+ D++ M+ LK+ F T E +AD+I+IN+C + A++ V
Sbjct: 95 KKFLVRTYGCQMNIHDSENMAGMLKEMGFEATDETTDADVILINTCAIRENAENKVFGEI 154
Query: 60 ---KKMARLDKEVLFTGCGVKTQGKELFEKGFLKG-----VFGHDNKEKINALLQEK--- 108
K++ R E++ CG +Q + + + K +FG N ++ LL+
Sbjct: 155 GNLKQLKREKPELVIGVCGCMSQEEGVVNRIMQKHQHIDMIFGTHNIHRLPHLLRNALFG 214
Query: 109 KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
K I+ + + M GKT+A++ I GCD C YCI+P RG+ RS I
Sbjct: 215 KEMIIEVWSKEGDIVENMPRAREGKTQAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDI 274
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGKDRGS---NIARLIKKLSQIAGLKRIRIGSLEPN 225
+++V L +G +E+ L G NV +YGKD + L+ ++ +I + R+R + P
Sbjct: 275 IQEVRDLARQGYKEITLLGQNVNAYGKDLADLDYGLGDLMDEIRKI-DIPRVRFTTSHPR 333
Query: 226 QINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFAI 282
+D +E+L + L +H+H+ +QH + +L+ M R+ + EL + I A N +
Sbjct: 334 DFDDHLIEVLAKGGNLVEHIHLPVQHGNSEILKLMARKYTREQYVELAQKIKRAIPNASF 393
Query: 283 GTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRL 342
TD IVG P E+ FE + + +IYS R+ TP++ M D+V +E ++RL
Sbjct: 394 TTDLIVGFPNETDEQFEDTLSLVREIEFDSAFTYIYSPREGTPAAKMKDNVPMEVKRERL 453
Query: 343 NAIKDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFK 380
+ L+ N Q L+ +VEV +GE K
Sbjct: 454 ARLNALV---NDISAQKNLEYQ---DKVVEVLVEGESK 485
>ref|NP_422478.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK25646.1| (AE006026) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 443
Score = 164 bits (416), Expect = 1e-39
Identities = 118/399 (29%), Positives = 192/399 (47%), Gaps = 25/399 (6%)
Query: 8 TFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKKMARL-- 65
TFGCR N ++++ M + +D ++ N+C VTN A R +K R
Sbjct: 37 TFGCRLNAYESEAMRARAS------ADGLSDAVVFNTCAVTNEAVRQARQAIRKARRERP 90
Query: 66 DKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENKHLDTT 125
++ TGC + + V G+ K AL R ++D + K
Sbjct: 91 GARIIVTGCAAQVDPAAFAAMPEVDLVLGNAEKAAPGALTDTSTRVRVNDIMSIKETAGH 150
Query: 126 MVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVL 185
++ + RA++++Q GCD C +CIIP RG +RS +++EQV L ++G +EVVL
Sbjct: 151 LIDGLKDRARAYVEVQNGCDHRCTFCIIPYGRGNSRSAPAGEVVEQVRKLAAEGYREVVL 210
Query: 186 TGTNVGSYGKDRGS--NIARLIKK-LSQIAGLKRIRIGSLEPNQINDEFLELLE-EDFLE 241
TG +V S+G D + +L+ + L + L R+R+ S++ +I+ + +LLE E L
Sbjct: 211 TGVDVTSWGADLPGQPTLGQLVGRILRMVPDLPRLRLSSIDAAEIDPDLFKLLETEPRLM 270
Query: 242 KHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFAIGTDFIVGHPGESGSVFE 299
+LH++LQ +L+L+RM RR+ + +L+ + + A G D I G P E+ FE
Sbjct: 271 PYLHLSLQAGDNLILKRMKRRHSREDALKLVAEVRRVRPDTAFGADLIAGFPTETDEAFE 330
Query: 300 KAFKNLESLPLTHIHPFIYSKRKDTPSSLM--TDSVSLEDSKKRLNAIKDLIFHKNKAFR 357
K +E L +H F YS R TP++ M ++D +RL + R
Sbjct: 331 NTLKLVEEAGLAFLHVFPYSARPGTPAARMPPVKGPVIKDRARRLREA-----GQRGLER 385
Query: 358 QLQLKLNTPLKALVEVQKDGEFKALDQFFNPIKIKSDKP 396
LQ ++ L LVE +DG +A D F I + P
Sbjct: 386 HLQRQVGRVLSGLVE--RDGVARAED--FTEIAFAGEAP 420
>ref|NP_657738.1| (NC_003995) UPF0004, Uncharacterized protein family UPF0004
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 509
Score = 164 bits (415), Expect = 2e-39
Identities = 114/399 (28%), Positives = 197/399 (48%), Gaps = 28/399 (7%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSE--NLKDFSTTLEEQEADIIIINSCTVTNGADSAV---R 56
+K Y +T+GC+ N DT+VM+ + T ++AD++++N+C + A++ V
Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGEL 125
Query: 57 SYAKKMARLDKEVLFTGCGVKTQGKELFEKGFLKG-----VFGHDNKEKINALLQE---K 108
+ K + R + ++L CG +Q + + K K VFG N ++ +L++
Sbjct: 126 GHLKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFS 185
Query: 109 KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
K ++ + + + G +A++ I GCD C YCI+P RG+ RS I
Sbjct: 186 KETVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDI 245
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGKDRGS---NIARLIKKLSQIAGLKRIRIGSLEPN 225
++++ L + G +E+ L G NV +YGKD + L+ +L ++ + RIR + P
Sbjct: 246 IQEIRHLAANGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDELRKV-DIARIRFTTSHPR 304
Query: 226 QINDEFLELL-EEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFAI 282
+D +E+L + L +H+H+ +Q ML+ M R+ + EL+ I A N +
Sbjct: 305 DFDDHLIEVLGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 283 GTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRL 342
TD IVG P E+ FE+ + FIYS R+ TP++ M D+V +E K+RL
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 343 NAIKDLIFHKNKAFRQLQLKLNTPLKA-LVEVQKDGEFK 380
+ L+ +L ++ N K +VEV DGE K
Sbjct: 425 QRLNALV-------NKLAIEKNDRYKGQIVEVLVDGESK 456
>ref|NP_240253.1| (NC_002528) hypothetical protein [Buchnera sp. APS]
sp|P57516|Y441_BUCAI Hypothetical protein BU441
dbj|BAB13139.1| (AP001119) hypothetical protein [Buchnera sp. APS]
Length = 439
Score = 162 bits (409), Expect = 9e-39
Identities = 106/368 (28%), Positives = 191/368 (51%), Gaps = 19/368 (5%)
Query: 1 MKKVYFKTFGCRTNLFDTQV---MSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRS 57
MK +Y KT+GC+ N +D+ + + E +S T + ADI+I+N+C++ A V
Sbjct: 1 MKYIYIKTWGCQMNEYDSSMIITLLEKNNQYSLTKSAENADILILNTCSIREKAQEKVFH 60
Query: 58 YA---KKMARLDKEVLFT--GCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE---K 108
KK+ + +V+ GC +GKE+F++ ++ +FG ++ ++ E K
Sbjct: 61 QLGRWKKIKNNNPKVIIAVGGCVATQEGKEIFKRANYVDIIFGTQTLHRLPKMIDEVEKK 120
Query: 109 KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
++ ID + ++ A I I EGC+ C++C++P RG S +
Sbjct: 121 RKLSIDISFPKLEKFKYFLAPKKKGYTADISIMEGCNKYCSFCVVPYTRGNEISRPCDDV 180
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYG----KDRGSNIARLIKKLSQIAGLKRIRIGSLEP 224
L ++ LL +G++E+ L G NV +Y + + LI+ +++I G++RIR + P
Sbjct: 181 LFEISLLAKQGIKEINLLGQNVNAYQGPTFNGKVCYFSELIRLVAEIDGIERIRFTTSNP 240
Query: 225 NQINDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLE--TIASKNFA 281
+ D+ +E+ ++ L LH+ +Q + +L M R T+ +++ TIA +
Sbjct: 241 LEFTDDIIEVYKDTPKLVSFLHLPVQSGSNKILNLMKRSYTTEDYTSIIKKLTIARPDIQ 300
Query: 282 IGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKR 341
I +DFIVG PGES FEK + ++++ FIYS R TP+S M D + L++ K+R
Sbjct: 301 ISSDFIVGFPGESEIDFEKTIEFIKNINFDMSFSFIYSARPGTPASNMNDDLDLKEKKRR 360
Query: 342 LNAIKDLI 349
L +++ I
Sbjct: 361 LYILQERI 368
>ref|NP_228462.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||D72352 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35737.1|AE001738_17 (AE001738) conserved hypothetical protein [Thermotoga maritima]
Length = 443
Score = 162 bits (409), Expect = 9e-39
Identities = 124/423 (29%), Positives = 211/423 (49%), Gaps = 20/423 (4%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
+ Y KTFGC+ N D++ M+ L + F+ +EAD++IIN+C V ++ S
Sbjct: 2 RFYIKTFGCQMNENDSEAMAGLLVKEGFTPASSPEEADVVIINTCAVRRKSEEKAYSELG 61
Query: 61 KMARLDKE----VLFTGCGVKTQGKELFEKG--FLKGVFGHDN-KEKINALLQEKKRFFI 113
++ +L K+ V GC + + ++ EKG F+ G E + L+ +K
Sbjct: 62 QVLKLKKKKKIVVGVAGCVAEKEREKFLEKGADFVLGTRAVPRVTEAVKKALEGEKVALF 121
Query: 114 DDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
+D+L+ + + + A++ I GCD C YCI+P RGR RS ILE+V
Sbjct: 122 EDHLDEYTHELPRIR--TSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSRPMADILEEVK 179
Query: 174 LLCSKGVQEVVLTGTNVGSYGKD--RGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEF 231
L +G +EV G NV +YGKD GS++A+L+++ S+I G++RI + P +DE
Sbjct: 180 KLAEQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKIEGIERIWFLTSYPTDFSDEL 239
Query: 232 LELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIV 288
+E++ ++ + K +H+ +Q + +L+ MNRR + LLE I SK AI +D IV
Sbjct: 240 IEVIAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPEVAISSDIIV 299
Query: 289 GHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPS-SLMTDSVSLEDSKKRLNAIKD 347
G P E+ F + +E ++ IYS R+ T + D V E+ +R+ + +
Sbjct: 300 GFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQFLMN 359
Query: 348 LIFHKNKAFRQLQLKLNTPLKALVEVQ-KDGEFKALDQFFNPIKIKSDKPLRASFLEIKE 406
L N+ + ++ +VE Q K+G F D I + + + F ++K
Sbjct: 360 LQKRINRKLNERY--RGKTVRIIVEAQAKNGLFYGRDIRNKIIAFEGEDWMIGRFADVKV 417
Query: 407 YEI 409
+I
Sbjct: 418 EKI 420
>ref|NP_353388.1| (NC_003062) AGR_C_623p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK86173.1| (AE007973) AGR_C_623p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 467
Score = 159 bits (403), Expect = 4e-38
Identities = 110/384 (28%), Positives = 191/384 (49%), Gaps = 28/384 (7%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENL-KDFSTTLEEQ-EADIIIINSCTVTNGADSAVRSYA 59
+KV+ KT+GC+ N++D+ MS+ L KD E+ EAD++++N+C + A V S
Sbjct: 22 RKVFIKTYGCQMNVYDSVRMSDALAKDGYVQTEDMGEADLVLLNTCHIREKAAEKVYSAL 81
Query: 60 KKMARLDKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQEKK 109
++ + K + GC + +G+E+ + + V G ++ L+ +
Sbjct: 82 GRLRDMKKSREEQGREFMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPDALKRVR 141
Query: 110 R--------FFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRAR 161
R + ++D E+ + G T AF+ +QEGCD C +C++P RG
Sbjct: 142 RGERVIETEYAVEDKFEHLPVAEKATLRSRGVT-AFLTVQEGCDKFCTFCVVPYTRGSEV 200
Query: 162 SFEERKILEQVGLLCSKGVQEVVLTGTNV----GSYGKDRGSNIARLIKKLSQIAGLKRI 217
S R+I+++ L GV+E+ L G NV G K +A L+ +L++I GL R+
Sbjct: 201 SRPVRQIVDEAMKLVDAGVREITLLGQNVNAWQGEGPKGEKWGLAELLYRLAEIPGLARL 260
Query: 218 RIGSLEPNQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI- 275
R + P ++D + + L +LH+ +Q D +L+ MNRR+ + +L+E I
Sbjct: 261 RYTTSHPRDMDDRLIGAHRDLRILMPYLHLPVQSGSDRILKAMNRRHTGEEYIQLIEKIR 320
Query: 276 -ASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVS 334
A + A+ DFIVG PGE+ FE +E++ F YS R TP + +TD V+
Sbjct: 321 SARPDIAMSGDFIVGFPGETDRDFEDTMAMVETVKYAQAFSFKYSTRPGTPGADLTDQVA 380
Query: 335 LEDSKKRLNAIKDLIFHKNKAFRQ 358
+ +RL ++ L+ + K F +
Sbjct: 381 EDVKAERLERLQALLLRQQKEFAE 404
>ref|NP_531062.1| (NC_003304) miaB protein [Agrobacterium tumefaciens str. C58 (U.
Washington)]
gb|AAL41378.1| (AE009007) miaB protein [Agrobacterium tumefaciens str. C58 (U.
Washington)]
Length = 455
Score = 159 bits (403), Expect = 4e-38
Identities = 110/384 (28%), Positives = 191/384 (49%), Gaps = 28/384 (7%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENL-KDFSTTLEEQ-EADIIIINSCTVTNGADSAVRSYA 59
+KV+ KT+GC+ N++D+ MS+ L KD E+ EAD++++N+C + A V S
Sbjct: 10 RKVFIKTYGCQMNVYDSVRMSDALAKDGYVQTEDMGEADLVLLNTCHIREKAAEKVYSAL 69
Query: 60 KKMARLDKE---------VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQEKK 109
++ + K + GC + +G+E+ + + V G ++ L+ +
Sbjct: 70 GRLRDMKKSREEQGREFMIGVAGCVAQAEGEEILRRAPAVDVVIGPQTYHRLPDALKRVR 129
Query: 110 R--------FFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRAR 161
R + ++D E+ + G T AF+ +QEGCD C +C++P RG
Sbjct: 130 RGERVIETEYAVEDKFEHLPVAEKATLRSRGVT-AFLTVQEGCDKFCTFCVVPYTRGSEV 188
Query: 162 SFEERKILEQVGLLCSKGVQEVVLTGTNV----GSYGKDRGSNIARLIKKLSQIAGLKRI 217
S R+I+++ L GV+E+ L G NV G K +A L+ +L++I GL R+
Sbjct: 189 SRPVRQIVDEAMKLVDAGVREITLLGQNVNAWQGEGPKGEKWGLAELLYRLAEIPGLARL 248
Query: 218 RIGSLEPNQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI- 275
R + P ++D + + L +LH+ +Q D +L+ MNRR+ + +L+E I
Sbjct: 249 RYTTSHPRDMDDRLIGAHRDLRILMPYLHLPVQSGSDRILKAMNRRHTGEEYIQLIEKIR 308
Query: 276 -ASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVS 334
A + A+ DFIVG PGE+ FE +E++ F YS R TP + +TD V+
Sbjct: 309 SARPDIAMSGDFIVGFPGETDRDFEDTMAMVETVKYAQAFSFKYSTRPGTPGADLTDQVA 368
Query: 335 LEDSKKRLNAIKDLIFHKNKAFRQ 358
+ +RL ++ L+ + K F +
Sbjct: 369 EDVKAERLERLQALLLRQQKEFAE 392
>ref|NP_300532.1| (NC_002491) hypothetical protein [Chlamydophila pneumoniae J138]
ref|NP_444827.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
sp|Q9Z874|Y477_CHLPN Hypothetical protein CPn0477/CP0277/CPj0477
pir||G81594 conserved hypothetical protein CP0277 [imported] - Chlamydophila
pneumoniae (strain AR39)
gb|AAF38135.1| (AE002186) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
dbj|BAA98683.1| (AP002546) hypothetical protein [Chlamydophila pneumoniae J138]
Length = 421
Score = 158 bits (399), Expect = 1e-37
Identities = 113/374 (30%), Positives = 190/374 (50%), Gaps = 27/374 (7%)
Query: 10 GCRTNLFDTQVMSENLK--DFSTTLEEQ-EADIIIINSCTVTNGADSAVRSYAKKMARLD 66
GCR N ++ Q + L + L+ + AD+ IIN+C VT A+S+ R +++ R +
Sbjct: 16 GCRVNQYEVQAYRDQLTILGYQEVLDSEIPADLCIINTCAVTASAESSGRHAVRQLCRQN 75
Query: 67 K--EVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENKHLDT 124
++ TGC + KE F + NKEK + +K F D
Sbjct: 76 PTAHIVVTGC-LGESDKEFFASLDRQCTLV-SNKEKSRLI---EKIFSYDTTFPE----- 125
Query: 125 TMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVV 184
+ F GK+RAFIK+Q+GC+ C+YCIIP +RGR+ S KIL ++ + +G +EVV
Sbjct: 126 FKIHSFEGKSRAFIKVQDGCNSFCSYCIIPYLRGRSVSRPAEKILAEIAGVVDQGYREVV 185
Query: 185 LTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDFLEKHL 244
+ G NVG Y D ++A LI+++ QI G++RIRI S++P+ I ++ + +H
Sbjct: 186 IAGINVGDY-CDGERSLASLIEQVDQIPGIERIRISSIDPDDITEDLHRAITS---SRHT 241
Query: 245 ----HIALQHSHDLMLERMNRRNRTKSDRELLETIASKN--FAIGTDFIVGHPGESGSVF 298
H+ LQ + +L+RMNR+ + +E + + +A TD IVG PGES F
Sbjct: 242 CPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRASDPRYAFTTDVIVGFPGESDQDF 301
Query: 299 EKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQ 358
E + +E + +H F +S R+ T + + + + +R + ++ K ++
Sbjct: 302 EDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPNQVIYERKKYLAEVA--KRVGQKE 359
Query: 359 LQLKLNTPLKALVE 372
+ +L + LVE
Sbjct: 360 MMKRLGETTEVLVE 373
>ref|NP_360883.1| (NC_003103) unknown [Rickettsia conorii]
gb|AAL03784.1| (AE008671) unknown [Rickettsia conorii]
Length = 445
Score = 157 bits (398), Expect = 2e-37
Identities = 106/379 (27%), Positives = 190/379 (49%), Gaps = 24/379 (6%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEE--QEADIIIINSCTVTNGADSAVRSYA 59
KK+Y KT+GC+ N++D+ M + L F E +EAD+II+N+C + A S
Sbjct: 3 KKLYIKTYGCQMNVYDSVKMQDLLYPFGYEPTENIEEADVIILNTCHIREKAAEKTYSEL 62
Query: 60 KKMARLDKE----------VLFTGCGVKTQGKELFEKG-FLKGVFG----HDNKEKINAL 104
++ +L ++ GC + +G+E+F + ++ V G ++ E I+ +
Sbjct: 63 GRIKKLQDTRTKQGLSSAIIVVAGCVAQAEGEEIFTRTPYVDIVVGPQSYYNLPELISKV 122
Query: 105 LQEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFE 164
++ +K D +E D + T AFI +QEGCD C +C++P RG S
Sbjct: 123 VRHEKHLIDLDFVEEAKFDQLPEQLYPQGTSAFISVQEGCDKFCTFCVVPYTRGAEFSRN 182
Query: 165 ERKILEQVGLLCSKGVQEVVLTGTNVGSY-GK---DRGSNIARLIKKLSQIAGLKRIRIG 220
++ + + S G +E++L G NV +Y GK D+ ++A L+K L+QI L+R+R
Sbjct: 183 VEQVYREALKVVSSGAKEIMLLGQNVNAYHGKGPADKIFSLADLLKHLAQIPNLERLRYT 242
Query: 221 SLEPNQINDEFLELL-EEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--AS 277
+ P +N++ ++L E L LH+ +Q + +L+ MNR++ + +++ + A
Sbjct: 243 TSHPIDMNNDLIKLYGTEPKLMPFLHLPVQSGSNKILKAMNRKHDREYYFDIINRLREAR 302
Query: 278 KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLED 337
+ + +DFIVG PGE+ FE + + + F YS R TP + TD +
Sbjct: 303 PDIVLSSDFIVGFPGETDEDFEDTLDLVRRVKYGQCYSFKYSPRPGTPGATRTDQIPEHI 362
Query: 338 SKKRLNAIKDLIFHKNKAF 356
+RL ++ + + AF
Sbjct: 363 KSERLTILQQELMAQQLAF 381
>ref|NP_348462.1| (NC_003030) Predicted Fe-S oxidoreductase, YMCB B.subtilis ortholog
[Clostridium acetobutylicum]
gb|AAK79802.1|AE007692_10 (AE007692) Predicted Fe-S oxidoreductase, YMCB B.subtilis ortholog
[Clostridium acetobutylicum]
Length = 441
Score = 157 bits (397), Expect = 2e-37
Identities = 111/366 (30%), Positives = 184/366 (49%), Gaps = 18/366 (4%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
K + +T+GC+ N D++ ++ LK+ + T ++AD+II N+C V A+ V
Sbjct: 5 KLFFIETWGCQMNAEDSEKLAGMLKEMKYEATDNREDADLIIFNTCCVRENAELKVYGNL 64
Query: 60 KKMARL-DKE--VLFTGCGVKTQGKELFEK-----GFLKGVFGHDNKEKINALLQ--EKK 109
+ +L DK+ ++ T CG Q +++ E F+ V G N + L+ E +
Sbjct: 65 GTLKKLKDKKPNLIITVCGCMMQQRDMAEHIKKRFPFVDIVMGTHNTQMFPQYLKKVENE 124
Query: 110 RFFIDDNLENKH-LDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
R + + + + + M +AF+ I GC+ C YCI+P VRGR RS + I
Sbjct: 125 RTSVVEIWDKEEGIVEGMPIYRSYDMKAFVTIMYGCNNFCTYCIVPYVRGRERSRKPEDI 184
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGK--DRGSNIARLIKKLSQIAGLKRIRIGSLEPNQ 226
++ L KG +E+ L G NV SYGK D N A L+++L+ I GL RIR + P
Sbjct: 185 ENEIKELVKKGYKEITLLGQNVNSYGKSLDEEMNFALLLRRLNNIEGLLRIRFMTSHPKD 244
Query: 227 INDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIG 283
+ D+ + + + D + +H+H+ +Q +L +MNR + L+ I S KN AI
Sbjct: 245 LTDDVIAAIADCDKVCEHIHLPVQSGSTTILNKMNRNYTREDYINLVNKIKSGIKNVAIT 304
Query: 284 TDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLN 343
TD IVG PGE+ FE ++ + F+YS R+ TP++ + + E KR N
Sbjct: 305 TDIIVGFPGETEEDFEDTLSLVKEVEYDSAFTFLYSIREGTPAAKYENQIPDEVKHKRFN 364
Query: 344 AIKDLI 349
+ + +
Sbjct: 365 KLLEAV 370
>ref|NP_389583.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|O31778|YMCB_BACSU Hypothetical protein ymcB
pir||D69884 conserved hypothetical protein ymcB - Bacillus subtilis
emb|CAB13574.1| (Z99112) similar to hypothetical proteins [Bacillus subtilis]
Length = 509
Score = 157 bits (397), Expect = 2e-37
Identities = 111/399 (27%), Positives = 196/399 (48%), Gaps = 28/399 (7%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAV---R 56
+K Y +T+GC+ N DT+VM+ + T +A++I++N+C + A++ V
Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGEL 125
Query: 57 SYAKKMARLDKEVLFTGCGVKTQGKELFEK-----GFLKGVFGHDNKEKINALLQE---K 108
+ K + + + +++ CG +Q + + + F+ +FG N ++ LL E
Sbjct: 126 GHLKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLS 185
Query: 109 KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
K ++ + + + GK + ++ I GCD C YCI+P RG+ RS I
Sbjct: 186 KEMVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDI 245
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGK---DRGSNIARLIKKLSQIAGLKRIRIGSLEPN 225
+++V L S+G +E+ L G NV +YGK D + L+ +L +I + RIR + P
Sbjct: 246 IQEVRRLASEGYKEITLLGQNVNAYGKDFEDMTYGLGDLMDELRKI-DIPRIRFTTSHPR 304
Query: 226 QINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFAI 282
+D +E+L + L H+H+ +Q +L+ M R+ + EL+ I A N ++
Sbjct: 305 DFDDRLIEVLAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364
Query: 283 GTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRL 342
TD IVG P E+ FE+ + + FIYS R+ TP++ M D+V + K+RL
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 343 NAIKDLIFH-KNKAFRQLQLKLNTPLKALVEVQKDGEFK 380
+ L+ K ++ + K +VEV +GE K
Sbjct: 425 QRLNALVNEISAKKMKEYEGK-------VVEVLVEGESK 456
>ref|NP_224673.1| (NC_000922) Hypothetical Protein [Chlamydophila pneumoniae CWL029]
pir||G72074 hypothetical protein - Chlamydophila pneumoniae (strain CWL029)
gb|AAD18617.1| (AE001632) Hypothetical Protein [Chlamydophila pneumoniae CWL029]
Length = 421
Score = 156 bits (395), Expect = 4e-37
Identities = 112/374 (29%), Positives = 190/374 (49%), Gaps = 27/374 (7%)
Query: 10 GCRTNLFDTQVMSENLK--DFSTTLEEQ-EADIIIINSCTVTNGADSAVRSYAKKMARLD 66
GCR N ++ Q + L + L+ + AD+ IIN+C VT A+S+ R +++ R +
Sbjct: 16 GCRVNQYEVQAYRDQLTILGYQEVLDSEIPADLCIINTCAVTASAESSGRHAVRQLCRQN 75
Query: 67 K--EVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENKHLDT 124
++ TGC + KE F + NKEK + +K F D
Sbjct: 76 PTAHIVVTGC-LGESDKEFFASLDRQCTLV-SNKEKSRLI---EKIFSYDTTFPE----- 125
Query: 125 TMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVV 184
+ F GK+RAFIK+Q+GC+ C+YCIIP +RGR+ S KIL ++ + +G +EVV
Sbjct: 126 FKIHSFEGKSRAFIKVQDGCNSFCSYCIIPYLRGRSVSRPAEKILAEIAGVVDQGYREVV 185
Query: 185 LTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDFLEKHL 244
+ G NVG Y D ++A LI+++ +I G++RIRI S++P+ I ++ + +H
Sbjct: 186 IAGINVGDY-CDGERSLASLIEQVDRIPGIERIRISSIDPDDITEDLHRAITS---SRHT 241
Query: 245 ----HIALQHSHDLMLERMNRRNRTKSDRELLETIASKN--FAIGTDFIVGHPGESGSVF 298
H+ LQ + +L+RMNR+ + +E + + +A TD IVG PGES F
Sbjct: 242 CPSSHLVLQSGSNSILKRMNRKYSRGDFLDCVEKFRASDPRYAFTTDVIVGFPGESDQDF 301
Query: 299 EKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQ 358
E + +E + +H F +S R+ T + + + + +R + ++ K ++
Sbjct: 302 EDTLRIIEDVGFIKVHSFPFSARRRTKAYTFDNQIPNQVIYERKKYLAEVA--KRVGQKE 359
Query: 359 LQLKLNTPLKALVE 372
+ +L + LVE
Sbjct: 360 MMKRLGETTEVLVE 373
>ref|NP_603372.1| (NC_003454) MIAB protein [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gb|AAL94671.1| (AE010559) MIAB protein [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length = 435
Score = 155 bits (392), Expect = 8e-37
Identities = 122/431 (28%), Positives = 209/431 (48%), Gaps = 26/431 (6%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
MKK T+GC+ N+ ++ + + ++ + T E AD + +N+CTV GA + +
Sbjct: 1 MKKASIITYGCQMNVNESAKIKKIFQNLGYDVTEEIDNADAVFLNTCTVREGAATQIFGK 60
Query: 59 AKKMARLDKE----VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQ-----EK 108
++ L ++ + TGC + QG+EL +K + V G+ N +I ++ E
Sbjct: 61 LGELKALKEKRGTIIGVTGCFAQEQGEELVKKFPIIDIVMGNQNIGRIPQAIEKIENNES 120
Query: 109 KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
DN + L + +EF A I I GC+ C +CI+P VRGR RS +I
Sbjct: 121 THEVYTDNEDE--LPPRLDAEFGSDQTASISITYGCNNFCTFCIVPYVRGRERSVPLEEI 178
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGKD--RGSNIARLIKKLSQIAGLKRIRIGSLEPNQ 226
++ V KG +E+VL G NV SYGKD G N A+L+ ++ ++ G +R S P
Sbjct: 179 VKDVEQYVKKGAKEIVLLGQNVNSYGKDFKNGDNFAKLLDEICKVEGDYIVRFVSPHPRD 238
Query: 227 INDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIG 283
D+ +E++ ++ + K LH+ LQ +L++M R + L++ I SK A+
Sbjct: 239 FTDDVIEVIAKNKKISKCLHLPLQSGSSQILKKMRRGYTKEKYLALVDKIKSKIPGVALT 298
Query: 284 TDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLN 343
D IVG PGE+ F ++ + + + F+YS RK T ++ M + + K+RL
Sbjct: 299 ADIIVGFPGETEEDFLDTIDVVQKVSFDNSYMFMYSIRKGTKAATMDNQIEESVKKERLQ 358
Query: 344 AIKDLIFHKNK-AFRQLQLKLNTPLKALVEVQKDGEFKALDQFFNPIKI---KSDKPLRA 399
+ ++ +NK +F + +K LVE + L + KI + + L+
Sbjct: 359 RLMEV---QNKCSFYESSKYKGRIVKVLVEGPSKKNKEVLSGRTSTNKIVLFRGNLALKG 415
Query: 400 SFLEIKEYEIK 410
F+ +K E K
Sbjct: 416 QFINVKINECK 426
>ref|NP_533359.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL43675.1| (AE009215) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 424
Score = 154 bits (389), Expect = 2e-36
Identities = 115/403 (28%), Positives = 189/403 (46%), Gaps = 33/403 (8%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
M V TFGCR N ++++VM + + +++N+C VT A R A
Sbjct: 1 MSGVEVITFGCRLNTYESEVMRAEAEKAGLN------NAVLVNTCAVTGEAVRQARQ-AI 53
Query: 61 KMARLDK---EVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINAL-------LQEKKR 110
+ AR D ++ TGC +T+ + + + V G++ K K + + +++
Sbjct: 54 RRARRDNPHARIIVTGCAAQTEKQTFADMPEVDAVLGNEEKLKSASYRALPDFGVSAEEK 113
Query: 111 FFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILE 170
++D + K MV G RAFI++Q GCD C +CIIP RG +RS +++
Sbjct: 114 LRVNDIMSIKATAPQMVKHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVD 173
Query: 171 QVGLLCSKGVQEVVLTGTNVGSYGKDRGS--NIARLIKK-LSQIAGLKRIRIGSLEPNQI 227
Q L G E+VLTG + SYG D ++ L K L Q+ + R+R+ S++ +
Sbjct: 174 QARRLTESGYCEIVLTGVDATSYGADLPGEPSLGYLAKTLLKQVPDIIRLRLSSIDSIEA 233
Query: 228 NDEFLELL-EEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIGT 284
+ ++L+ +E HLH++LQH D++L+RM RR+ + S + A G
Sbjct: 234 DHHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADAIRFCNEVRSLRPDIAFGA 293
Query: 285 DFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM--TDSVSLEDSKKRL 342
D I G P E+ + E A E ++ +H F YS R+ TP+ M D +++ RL
Sbjct: 294 DMIAGFPTETEEMLENAATLAEECGISSLHVFPYSPREGTPAVRMPQLDRALVKERAGRL 353
Query: 343 NAIKDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFKALDQF 385
A + +A +Q L+ V V+ G F D F
Sbjct: 354 RA-------RGEALKQAHLQNMVGSVQTVLVENSG-FAHTDNF 388
>ref|NP_355629.1| (NC_003062) AGR_C_4885p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK88414.1| (AE008182) AGR_C_4885p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 448
Score = 154 bits (389), Expect = 2e-36
Identities = 115/403 (28%), Positives = 189/403 (46%), Gaps = 33/403 (8%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
M V TFGCR N ++++VM + + +++N+C VT A R A
Sbjct: 25 MSGVEVITFGCRLNTYESEVMRAEAEKAGLN------NAVLVNTCAVTGEAVRQARQ-AI 77
Query: 61 KMARLDK---EVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINAL-------LQEKKR 110
+ AR D ++ TGC +T+ + + + V G++ K K + + +++
Sbjct: 78 RRARRDNPHARIIVTGCAAQTEKQTFADMPEVDAVLGNEEKLKSASYRALPDFGVSAEEK 137
Query: 111 FFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILE 170
++D + K MV G RAFI++Q GCD C +CIIP RG +RS +++
Sbjct: 138 LRVNDIMSIKATAPQMVKHIDGHVRAFIQVQNGCDHRCTFCIIPYGRGNSRSVPMGAVVD 197
Query: 171 QVGLLCSKGVQEVVLTGTNVGSYGKDRGS--NIARLIKK-LSQIAGLKRIRIGSLEPNQI 227
Q L G E+VLTG + SYG D ++ L K L Q+ + R+R+ S++ +
Sbjct: 198 QARRLTESGYCEIVLTGVDATSYGADLPGEPSLGYLAKTLLKQVPDIIRLRLSSIDSIEA 257
Query: 228 NDEFLELL-EEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIGT 284
+ ++L+ +E HLH++LQH D++L+RM RR+ + S + A G
Sbjct: 258 DHHLMDLIADEPRFMPHLHLSLQHGDDMILKRMKRRHLRADAIRFCNEVRSLRPDIAFGA 317
Query: 285 DFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM--TDSVSLEDSKKRL 342
D I G P E+ + E A E ++ +H F YS R+ TP+ M D +++ RL
Sbjct: 318 DMIAGFPTETEEMLENAATLAEECGISSLHVFPYSPREGTPAVRMPQLDRALVKERAGRL 377
Query: 343 NAIKDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFKALDQF 385
A + +A +Q L+ V V+ G F D F
Sbjct: 378 RA-------RGEALKQAHLQNMVGSVQTVLVENSG-FAHTDNF 412
>ref|NP_221158.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZCE8|Y808_RICPR Hypothetical protein RP808
pir||B71642 hypothetical protein RP808 - Rickettsia prowazekii
emb|CAA15234.1| (AJ235273) unknown [Rickettsia prowazekii]
Length = 445
Score = 154 bits (388), Expect = 2e-36
Identities = 115/409 (28%), Positives = 203/409 (49%), Gaps = 40/409 (9%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKDFS--TTLEEQEADIIIINSCTVTNGADSAVRSYA 59
KK+Y KT+GC+ N++D+ + + L F +T + +EADIII+N+C + A A ++Y+
Sbjct: 3 KKLYIKTYGCQMNVYDSVKIQDLLYPFGYESTEDIKEADIIILNTCHIREKA--AEKTYS 60
Query: 60 -----KKMARLDKE-------VLFTGCGVKTQGKELFEKG-FLKGVFG----HDNKEKIN 102
KK+ K+ ++ GC + +G+E+F + ++ V G ++ E I+
Sbjct: 61 ELGRIKKLQNTRKQEGLNPAIIVVAGCVAQAEGEEIFSRTPYVDIVVGPQSYYNLPELIS 120
Query: 103 ALLQEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARS 162
+++ +K+ D +E D + +FI +QEGCD C +C++P RG S
Sbjct: 121 KVVRHEKQLIDLDFVEEAKFDNLPEQLYPQGASSFISVQEGCDKFCTFCVVPYTRGAEFS 180
Query: 163 FEERKILEQVGLLCSKGVQEVVLTGTNVGSY----GKDRGSNIARLIKKLSQIAGLKRIR 218
++ + S +E++L G NV +Y KD+ +A L+K L+QI L R+R
Sbjct: 181 RSVEQVYRESLKAVSNDAKEIILLGQNVNAYHGKGPKDKIFTLADLLKCLAQIPNLARLR 240
Query: 219 IGSLEPNQINDEFLELL-EEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI-- 275
+ P + D+ ++L E L LH+ +Q + +L+ MNR K DR+ I
Sbjct: 241 YMTSHPIDMTDDLIKLHGTEPKLMPFLHLPVQSGSNKILKAMNR----KHDRDYYFNIIN 296
Query: 276 ----ASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331
A + + +DFIVG PGE+ FE + + + F YS R TP ++ TD
Sbjct: 297 RLREARSDIVLSSDFIVGFPGETEQDFEDTLDLVHRVKYGQCYSFKYSPRPGTPGAIRTD 356
Query: 332 SVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFK 380
+ KRL ++ + + AF Q + + ++ L + +DG+F+
Sbjct: 357 QIPEHIKSKRLTILQQELATQQLAFN--QSCVGSTMRVLFD--RDGKFE 401
>ref|NP_562009.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB80799.1| (AP003189) conserved hypothetical protein [Clostridium perfringens]
Length = 447
Score = 153 bits (387), Expect = 3e-36
Identities = 111/379 (29%), Positives = 193/379 (50%), Gaps = 25/379 (6%)
Query: 2 KKVY-FKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
KK++ T+GC+ N D++ +S LK + T ++EA III N+C V A++ V
Sbjct: 9 KKLFCISTYGCQMNEEDSEKLSGMLKSQGYERTENKEEASIIIFNTCCVRENAENKVFGN 68
Query: 59 AKKMARLDKE-----VLFTGCGVKTQG---KELFEKGFLKGVFGHDNKEK----INALLQ 106
++ +L K+ + GC ++ G K L ++ +FG N K ++ +LQ
Sbjct: 69 LGQLKQLKKKNPNLVIAICGCMMQQVGMADKVLKTFPYVDIIFGTHNAHKFPEYLHRVLQ 128
Query: 107 EKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEER 166
E + N E ++ + +AF+ I GC+ C YCI+P VRGR RS +
Sbjct: 129 EGVQVKEILNKEEGIVEGLPIDR-KSDVKAFVTIMYGCNNFCTYCIVPYVRGRERSRKSE 187
Query: 167 KILEQVGLLCSKGVQEVVLTGTNVGSYGK--DRGSNIARLIKKLSQIAGLKRIRIGSLEP 224
I++++ L S+G +E+ L G NV SYGK + + A L++K++++ GL+R+R + P
Sbjct: 188 DIIKEIEELVSQGYKEITLLGQNVNSYGKGLEEDIDFAGLLRKVNEVKGLERVRFMTSHP 247
Query: 225 NQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFA 281
++D+ + ++E D L + +H+ +Q +L+ MNR + +L++ I S+ +
Sbjct: 248 KDLSDDVIMAIKECDKLCEQVHLPVQSGSSRILKEMNRHYDREYYLDLVKKIKSEIPDVT 307
Query: 282 IGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKR 341
+ TD I+G PGE+ F E + FIYS+R TP+ M + + + R
Sbjct: 308 LTTDIIIGFPGETEEDFLDTLSLCEEVGYDSAFTFIYSRRNHTPADKMENQIPDDIKHDR 367
Query: 342 LN----AIKDLIFHKNKAF 356
N AI + KNK +
Sbjct: 368 FNRLVEAINKKVVIKNKEY 386
>ref|NP_207067.1| (NC_000915) conserved hypothetical ATP-binding protein
[Helicobacter pylori 26695]
sp|P56131|Y269_HELPY Hypothetical protein HP0269
pir||E64553 conserved hypothetical ATP-binding protein HP0269 - Helicobacter
pylori (strain 26695)
gb|AAD07337.1| (AE000546) conserved hypothetical ATP-binding protein [Helicobacter
pylori 26695]
Length = 437
Score = 152 bits (385), Expect = 5e-36
Identities = 117/396 (29%), Positives = 192/396 (47%), Gaps = 33/396 (8%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
KVY +T GC N D++ + L D+ T + + AD+I+IN+C+V + + S
Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETNDPKTADLILINTCSVREKPERKLFSEIG 61
Query: 61 KMARLDK---EVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQEKKRFFIDDN 116
+ A++ K ++ GC G ++ +K + V G N KI+ ++ ++K + +
Sbjct: 62 QFAKIKKPNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAID 121
Query: 117 LENKHLDTTMVSEFVGKT---RAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
+ ++ EF K R+ + I GCD C YCI+P RG+ S IL++
Sbjct: 122 YD----ESAYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAE 177
Query: 174 LLCSKGVQEVVLTGTNVGSYGKDRGSNIAR-----LIKKLSQIAGLKRIRIGSLEPNQIN 228
L + G +E++L G NV +YG S A+ L+ KLS+I G++RIR S P +N
Sbjct: 178 KLANNGTKELMLLGQNVNNYGARFSSEHAKVDFSDLLDKLSEIQGIERIRFTSPHPLHMN 237
Query: 229 DEFLE-LLEEDFLEKHLHIALQHSHDLMLERMNR-------RNRTKSDRELLETIASKNF 280
D FLE + + K +H+ LQ +L+ M R NR + + L+ +
Sbjct: 238 DGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEV----- 292
Query: 281 AIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKK 340
I TD IVG P ES FE + LE + ++ FIYS R T + + V LE S
Sbjct: 293 GISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEVSSS 352
Query: 341 RLNAIKDLIFHKNKAFRQLQLKLNTPLKALVEVQKD 376
RL +++ HK + +L++ LVE +++
Sbjct: 353 RLERLQNR--HKEILEEKAKLEVGKTHVVLVENRRE 386
>ref|NP_106183.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51969.1| (AP003006) hypothetical protein [Mesorhizobium loti]
Length = 450
Score = 152 bits (385), Expect = 5e-36
Identities = 113/383 (29%), Positives = 189/383 (48%), Gaps = 30/383 (7%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAV---- 55
KKV+ KT+GC+ N++D+Q M + L ++ T EAD++++N+C + A V
Sbjct: 7 KKVFIKTYGCQMNVYDSQRMGDALAADGYTATDAIDEADLVLLNTCHIREKAAEKVYSEL 66
Query: 56 ---RSYAKKMARLDKEVLF--TGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQE-- 107
R + A +E+L GC + +G E+ + + V G ++ +L
Sbjct: 67 GRIRDMKAERAIAGRELLIGVAGCVAQAEGAEIIRRSPAVDLVIGPQTYHRLPDVLARVR 126
Query: 108 --KKRFFIDDNLENK--HLDTTMVSEFVGK-TRAFIKIQEGCDFDCNYCIIPSVRGRARS 162
+K D +E+K HL +E + + AF+ +QEGCD C +C++P RG S
Sbjct: 127 GGEKIVETDYAIEDKFDHLPQPKRAEVIKRGVTAFLTVQEGCDKFCTFCVVPYTRGSEVS 186
Query: 163 FEERKILEQVGLLCSKGVQEVVLTGTNV------GSYGKDRGSNIARLIKKLSQIAGLKR 216
+I+ + L GV+EV L G NV G G++ G + RL+ +L++I GL R
Sbjct: 187 RPVAQIVAEAERLAEAGVREVTLLGQNVNAWHGQGENGEEWG--LGRLLFRLAEIPGLAR 244
Query: 217 IRIGSLEPNQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI 275
+R + P ++DE + + L +LH+ +Q D +L+ MNRR+ + LL+ I
Sbjct: 245 LRYTTSHPRDMDDELISAHRDLPSLMPYLHLPVQSGSDRILKAMNRRHTARDYLALLDRI 304
Query: 276 --ASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSV 333
A + A+ DFIVG PGE+ + FE + + + F YS R TP + M D V
Sbjct: 305 RAARPDIALSGDFIVGFPGETEADFEATMELVRQVNYASAFSFKYSPRPGTPGAEMPDHV 364
Query: 334 SLEDSKKRLNAIKDLIFHKNKAF 356
+RL ++ L+ + + F
Sbjct: 365 PETLKDERLQRLQALLLKQQQGF 387
>ref|NP_222975.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZMG6|Y269_HELPJ Hypothetical protein JHP0254
pir||E71953 hypothetical protein jhp0254 - Helicobacter pylori (strain J99)
gb|AAD05846.1| (AE001463) putative [Helicobacter pylori J99]
Length = 437
Score = 152 bits (384), Expect = 7e-36
Identities = 117/396 (29%), Positives = 192/396 (47%), Gaps = 33/396 (8%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
KVY +T GC N D++ + L D+ T + + AD+I+IN+C+V + + S
Sbjct: 2 KVYIETMGCAMNSRDSEHLLSELSKLDYKETSDPKMADLILINTCSVREKPERKLFSEIG 61
Query: 61 KMARLDK---EVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQEKKRFFIDDN 116
+ A++ K ++ GC G ++ +K + V G N KI+ ++ ++K + +
Sbjct: 62 QFAKIKKPNAKIGVCGCTASHMGADILKKAPSVSFVLGARNVSKISQVIHKEKAVEVAID 121
Query: 117 LENKHLDTTMVSEFVGKT---RAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
+ ++ EF K R+ + I GCD C YCI+P RG+ S IL++
Sbjct: 122 YD----ESAYAFEFFEKKAQIRSLLNISIGCDKKCAYCIVPHTRGKEISIPMDLILKEAE 177
Query: 174 LLCSKGVQEVVLTGTNVGSYGKDRGSNIAR-----LIKKLSQIAGLKRIRIGSLEPNQIN 228
L + G +E++L G NV +YG S A+ L+ KLS+I G++RIR S P +N
Sbjct: 178 KLANNGTKELMLLGQNVNNYGVRFSSEHAKVGFSDLLDKLSEIQGIERIRFTSPHPLHMN 237
Query: 229 DEFLE-LLEEDFLEKHLHIALQHSHDLMLERMNR-------RNRTKSDRELLETIASKNF 280
D FLE + + K +H+ LQ +L+ M R NR + + L+ +
Sbjct: 238 DAFLERFAQNPKVCKSIHMPLQSGSSAVLKMMRRGYSKEWFLNRVERLKALVPEV----- 292
Query: 281 AIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKK 340
I TD IVG P ES FE + LE + ++ FIYS R T + + V LE S
Sbjct: 293 GISTDIIVGFPNESDKDFEDTMEVLEKVRFDTLYSFIYSPRPFTEAGAWKERVPLEISSL 352
Query: 341 RLNAIKDLIFHKNKAFRQLQLKLNTPLKALVEVQKD 376
RL +++ HK + +L++ LVE +++
Sbjct: 353 RLERLQNR--HKEILEEKAKLEVGKTHVVLVENRRE 386
>ref|NP_281645.1| (NC_002163) hypothetical protein Cj0458c [Campylobacter jejuni]
pir||E81390 hypothetical protein Cj0458c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75096.1| (AL139075) hypothetical protein Cj0458c [Campylobacter jejuni]
Length = 433
Score = 152 bits (383), Expect = 9e-36
Identities = 122/422 (28%), Positives = 204/422 (47%), Gaps = 24/422 (5%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENL---KDFSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
KK++ +T GC N+ D++ M L ++++ T + +EAD+I+IN+C+V + S
Sbjct: 4 KKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSE 63
Query: 59 AKKMARLDKE---VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQEKKRFFID 114
++ KE + GC G E+F++ ++ V G N KI ++ K +D
Sbjct: 64 VGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIKTPKFMGVD 123
Query: 115 DNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGL 174
+ + + K+ +I I GCD C YCI+P RG S I ++
Sbjct: 124 IDYDESEFAFADFRNSIYKS--YINISIGCDKHCTYCIVPHTRGDEISIPFNIIYKEAQK 181
Query: 175 LCSKGVQEVVLTGTNVGSYGK-----DRGSNIARLIKKLSQIAGLKRIRIGSLEPNQIND 229
KG +E+ L G NV +YGK + + + L+++LS I GL+RIR S P ++D
Sbjct: 182 AIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTIEGLERIRFTSPHPLHMDD 241
Query: 230 EFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKS---DRELLETIASKNFAIGTD 285
+FLE+ + + K +H+ LQ +L+ M +R TK +R L N +I TD
Sbjct: 242 KFLEVFANNPKVCKSMHMPLQSGSSEILKAM-KRGYTKEWYLNRALKLRELCPNVSISTD 300
Query: 286 FIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAI 345
IV PGES FE+ LE + I F YSKR T ++ M + + E + +RL+ +
Sbjct: 301 IIVAFPGESEKDFEETVDVLEKVRFEQIFSFKYSKRPLTKAATMPNQIDEEIASRRLSTL 360
Query: 346 KDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFKA--LDQFFNPIKIKSDKPLRASFLE 403
++ H + ++ + N K L E + G A D F ++++ + L F E
Sbjct: 361 QNR--HSEILDKIVKKQENKTFKVLFEELRAGNSIAGRTDNNF-LVQVEGSEELLGQFKE 417
Query: 404 IK 405
+K
Sbjct: 418 VK 419
>ref|NP_622995.1| (NC_003869) 2-methylthioadenine synthetase [Thermoanaerobacter
tengcongensis]
gb|AAM24599.1| (AE013097) 2-methylthioadenine synthetase [Thermoanaerobacter
tengcongensis]
Length = 436
Score = 152 bits (383), Expect = 9e-36
Identities = 116/419 (27%), Positives = 207/419 (48%), Gaps = 27/419 (6%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
M+ V + GC N D++ M LK+ ++ +E++AD+IIIN+C A Y
Sbjct: 1 MRNVGIISLGCPKNSVDSEKMLALLKEKGYNIVNDEKKADVIIINTCAFIEDAKKESIEY 60
Query: 59 AKKMARLDKE----VLFTGCGVKTQGKELF-EKGFLKGVFGHDNKEKINALLQEKKR--- 110
+M L K+ ++ TGC + KEL E L V G + +I +++E K+
Sbjct: 61 IIQMGELKKKRLKYLIATGCLSERYNKELIKELPELDAVIGTGDFTQIVDVIEEVKKGKK 120
Query: 111 ---FFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERK 167
+ D L ++ + + + A++KI EGC C++CIIP +RG+ +S +
Sbjct: 121 VLKYGHPDLLNDEGIPRILTTP---PYYAYLKIAEGCSNACSFCIIPKLRGKYKSRKMEN 177
Query: 168 ILEQVGLLCSKGVQEVVLTGTNVGSYGKD--RGSNIARLIKKLSQIAGLKRIRIGSLEPN 225
I+E+ L KGV+E+++ + YG D + + +L+++LS+I LK IR+ P+
Sbjct: 178 IIEEAQELARKGVKELIIIAQDTTKYGIDLYKKLMLPQLLRELSKIEELKWIRLLYAYPD 237
Query: 226 QINDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS-KNFAIG 283
+ DE +E ++ + + K++ I LQHS + +L+RMNR + E++ + S +
Sbjct: 238 SVTDELIEEIKNNQKIVKYIDIPLQHSSESVLKRMNRGTTRRKIEEVISKLRSIPGMVMR 297
Query: 284 TDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLN 343
T F+VG PGE+ FE ++ + F YS+ + T S M + + KR
Sbjct: 298 TTFMVGFPGETEEEFEDLKNFIKEKRFERVGVFTYSREEGTKSYYMKPQIRKKVKLKRQE 357
Query: 344 AIKDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFKALDQFFNP-----IKIKSDKPL 397
+ ++ K ++ K+ T L+ L+E +DG + P + ++SDK L
Sbjct: 358 ELMEI--QKQISYEFNMSKIGTKLEVLIEGFEDGVYYGRSYMDAPEIDGLVYVRSDKKL 414
>ref|NP_274862.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
pir||C81034 conserved hypothetical protein NMB1866 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF42200.1| (AE002536) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 442
Score = 151 bits (382), Expect = 1e-35
Identities = 104/396 (26%), Positives = 189/396 (47%), Gaps = 30/396 (7%)
Query: 1 MKKVYFKTFGCRTNLFDTQ----VMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVR 56
MKKV+ +TFGC+ N +D+ V++E + EADII+ N+C+V A V
Sbjct: 1 MKKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVF 60
Query: 57 SYAKKMARLDKE-----VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQEKKR 110
S ++ L ++ + GC +G+ + ++ ++ VFG ++ ++ +K+
Sbjct: 61 SDLGRVRPLKEKNPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKET 120
Query: 111 FFIDDNLENKHLDTTMVSEF-------VGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSF 163
L + + +F V AF+ I EGC C++C++P RG S
Sbjct: 121 ----SGLSQVDISFPEIEKFDHLPPARVEGGAAFVSIMEGCSKYCSFCVVPYTRGEEFSR 176
Query: 164 EERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGS----NIARLIKKLSQIAGLKRIRI 219
+L ++ L +GV+E+ L G NV +Y + + A L++ + +I G++R+R
Sbjct: 177 PLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIERMRF 236
Query: 220 GSLEPNQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS- 277
+ P + D +E + L HLH+ +Q D +L M R + ++ + +
Sbjct: 237 TTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRKLRAI 296
Query: 278 -KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLE 336
+ + +DFIVG PGE+ FE+ K ++ + FIYS R TP++ + D E
Sbjct: 297 RPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLPDDTPHE 356
Query: 337 DSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
+ +RL A+ ++I + + R Q + T + LVE
Sbjct: 357 EKVRRLEALNEVI--EAETARINQTMVGTVQRCLVE 390
>ref|NP_283403.1| (NC_003116) hypothetical protein NMA0590 [Neisseria meningitidis
Z2491]
pir||C81978 hypothetical protein NMA0590 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB83881.1| (AL162753) hypothetical protein NMA0590 [Neisseria meningitidis
Z2491]
Length = 442
Score = 151 bits (382), Expect = 1e-35
Identities = 104/396 (26%), Positives = 189/396 (47%), Gaps = 30/396 (7%)
Query: 1 MKKVYFKTFGCRTNLFDTQ----VMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVR 56
MKKV+ +TFGC+ N +D+ V++E + EADII+ N+C+V A V
Sbjct: 1 MKKVFIRTFGCQMNEYDSDKMLAVLAEEHGGIEQVTQADEADIILFNTCSVREKAQEKVF 60
Query: 57 SYAKKMARLDKE-----VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQEKKR 110
S ++ L ++ + GC +G+ + ++ ++ VFG ++ ++ +K+
Sbjct: 61 SDLGRVRPLKEKKPGLIIGVAGCVASQEGENIIKRAPYVDVVFGPQTLHRLPKMIVDKET 120
Query: 111 FFIDDNLENKHLDTTMVSEF-------VGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSF 163
L + + +F V AF+ I EGC C++C++P RG S
Sbjct: 121 ----SGLSQVDISFPEIEKFDHLPPARVEGGAAFVSIMEGCSKYCSFCVVPYTRGEEFSR 176
Query: 164 EERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGS----NIARLIKKLSQIAGLKRIRI 219
+L ++ L +GV+E+ L G NV +Y + + A L++ + +I G++R+R
Sbjct: 177 PLNDVLTEIANLAQQGVKEINLLGQNVNAYRGEMDDGEICDFATLLRIVHEIPGIERMRF 236
Query: 220 GSLEPNQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS- 277
+ P + D +E + L HLH+ +Q D +L M R + ++ + +
Sbjct: 237 TTSHPREFTDSIIECYRDLPKLVSHLHLPIQSGSDRVLSAMKRGYTALEYKSIIRKLRAI 296
Query: 278 -KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLE 336
+ + +DFIVG PGE+ FE+ K ++ + FIYS R TP++ + D E
Sbjct: 297 RPDLCLSSDFIVGFPGETEREFEQTLKLVKDIAFDLSFVFIYSPRPGTPAANLHDDTPHE 356
Query: 337 DSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
+ +RL A+ ++I + + R Q + T + LVE
Sbjct: 357 EKVRRLEALNEVI--EAETARINQTMIGTVQRCLVE 390
>ref|NP_343738.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
solfataricus]
gb|AAK42528.1| (AE006839) Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 421
Score = 150 bits (378), Expect = 3e-35
Identities = 117/422 (27%), Positives = 196/422 (45%), Gaps = 32/422 (7%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEE--QEADIIIINSCTVTNGADSAVRSY 58
MK +Y +T+GC N DT VM LK E + ADIII+N+C V + ++
Sbjct: 1 MKNIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQR 60
Query: 59 AKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLE 118
K++ L K+++ GC + + + G + E+I +++ ++R + +
Sbjct: 61 IKELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIVDIVKSEERKIVIEG-- 118
Query: 119 NKHLDTTMVSE--FVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLC 176
D +++ F GK A I + +GC +C++CI R + RS+ R+I+
Sbjct: 119 ----DRALITPRTFDGKI-AIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAI 173
Query: 177 SKGVQEVVLTGTNVGSYGKDRGSNIA--RLIKKLSQIAGLKRIRIGSLEPNQ---INDEF 231
G +E+ LTG + +YG D G +I+ ++ K++ I G IRIG + P Q I D+
Sbjct: 174 QSGAREIELTGQDTAAYGLDLGGSISLVDVVNKVADIDGDFMIRIGMMTPEQAMRIMDDL 233
Query: 232 LELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIVG 289
+E + + K +H+ +Q D +L+ MNR+ +EL+ I K I TD IVG
Sbjct: 234 IEAIRNPKVYKFIHLPVQSGDDRVLKLMNRKYTVDEYKELISEIRHKIPFVNITTDIIVG 293
Query: 290 HPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLI 349
HPGE F ++ L IH +YS R +T S+ M + DS K K I
Sbjct: 294 HPGEDEEAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMP---QVPDSIK-----KKRI 345
Query: 350 FHKNKAFRQLQLKL------NTPLKALVEVQKDGEFKALDQFFNPIKIKSDKPLRASFLE 403
NK + L L + +T E+ + G + P+ I+S+ + +
Sbjct: 346 QIANKLYEDLALSIHLDYVGSTSRVITTELGRKGSVIGRLMNYIPVVIRSENVELGKWYD 405
Query: 404 IK 405
+K
Sbjct: 406 VK 407
>ref|NP_213198.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O66638|Y284_AQUAE Hypothetical protein AQ_284
pir||B70326 conserved hypothetical protein aq_284 - Aquifex aeolicus
gb|AAC06605.1| (AE000682) hypothetical protein [Aquifex aeolicus]
Length = 440
Score = 150 bits (378), Expect = 3e-35
Identities = 122/429 (28%), Positives = 199/429 (45%), Gaps = 34/429 (7%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
KK + KTFGC+ N D++ + LK + T +EAD+II+N+CT+ D V S+
Sbjct: 3 KKFFIKTFGCQMNFNDSERIRGLLKTIGYEQTDNWEEADLIILNTCTIREKPDQKVLSHL 62
Query: 60 KKMARLDKE-----VLFTGCGVKTQGKELFEKGFLKGVFG-----HDNKEKINALLQEKK 109
+ ++ ++ + GC + G EL +K + + H E IN K
Sbjct: 63 GEYKKIKEKNPKALIAVAGCLAQRTGWELVKKAPVIDIMFSSFNMHQLPELINQAQAGYK 122
Query: 110 RFFIDDNLENKHLDTTMVSEFV----GKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEE 165
I D L D + E+ K A++ I +GCD +C YC++P RG+ RS
Sbjct: 123 AIAILDELPQ---DEDKIWEYPVERDNKYCAYVTIIKGCDKNCTYCVVPRTRGKERSRAL 179
Query: 166 RKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNI--ARLIKKLSQIAGLKRIRIGSLE 223
IL++V L GV+E+ L G NV ++GKD I + L+ ++S+I G++RIR +
Sbjct: 180 HSILDEVKRLVDDGVREIHLLGQNVTAWGKDFEKPIPFSELLYQVSKIDGVERIRFTTGH 239
Query: 224 PNQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNF 280
P + D+ +E + + + LH+ Q + +L M+R + E +E + K+
Sbjct: 240 PRDLTDDIIEAMADIPQVCNALHLPFQAGSNRILALMDRGYTKEEYLEKIEKLKEKVKDI 299
Query: 281 AIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM----TDSVSLE 336
A+ TD IVG P E+ FE L+ + + F +S R TP++ M D V E
Sbjct: 300 AMSTDVIVGFPTETEEDFEHTLDVLKKVRFEQVFSFKFSPRPGTPAAEMEGQIPDDVKTE 359
Query: 337 DSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFKALDQFFNPIKIKSDKP 396
++ L K ++ K + T + LVE +K+GE K D
Sbjct: 360 RMRRLLELQKSILSEIAKKYE------GTVQEVLVEEEKNGELIGRTTTNKWASFKGDPS 413
Query: 397 LRASFLEIK 405
L ++IK
Sbjct: 414 LLGKIVKIK 422
>ref|NP_286386.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
gb|AAG54994.1|AE005245_3 (AE005245) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
Length = 474
Score = 149 bits (376), Expect = 6e-35
Identities = 113/394 (28%), Positives = 191/394 (47%), Gaps = 29/394 (7%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLK---DFSTTLEEQEADIIIINSCTVTNGADSAV--- 55
KK++ KT+GC+ N +D+ M++ L + T +EAD++++N+C++ A V
Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62
Query: 56 --RSYAKKMARLDKEVLFTGCGVKTQGKELFEKG-FLKGVFG----HDNKEKINALLQEK 108
R K D + GC +G+ + ++ ++ +FG H E IN++ ++
Sbjct: 63 LGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRGDR 122
Query: 109 KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
E + D G T AF+ I EGC+ C YC++P RG S I
Sbjct: 123 SPVVDISFPEIEKFDRLPEPRAEGPT-AFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDI 181
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSN-------IARLIKKLSQIAGLKRIRIGS 221
L ++ L ++GV+EV L G NV ++ RG N A L++ ++ I G+ RIR +
Sbjct: 182 LFEIAQLAAQGVREVNLLGQNVNAW---RGENYDGTTGSFADLLRLVAAIDGIDRIRFTT 238
Query: 222 LEPNQINDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASK 278
P + D+ +E+ + L LH+ +Q D +L M R + + ++ + A
Sbjct: 239 SHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARP 298
Query: 279 NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDS 338
+ I +DFIVG PGE+ FEK K + + + FI+S R TP++ M D V E+
Sbjct: 299 DIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEK 358
Query: 339 KKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
K+RL +++ I +A + L T + LVE
Sbjct: 359 KQRLYILQERI--NQQAMAWXRRMLGTTQRILVE 390
>ref|NP_455239.1| (NC_003198) MiaB protein (putative tRNA-thiotransferase (or
tRNA-methylthiotransferase)) [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD05141.1| (AL627267) MiaB protein (putative tRNA-thiotransferase (or
tRNA-methylthiotransferase)) [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 488
Score = 149 bits (375), Expect = 8e-35
Identities = 113/394 (28%), Positives = 191/394 (47%), Gaps = 29/394 (7%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLK---DFSTTLEEQEADIIIINSCTVTNGADSAV--- 55
KK++ KT+GC+ N +D+ M++ L + T +EAD++++N+C++ A V
Sbjct: 17 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 76
Query: 56 --RSYAKKMARLDKEVLFTGCGVKTQGKELFEKG-FLKGVFG----HDNKEKINALLQEK 108
R K D + GC +G+ + ++ ++ +FG H E IN++ ++
Sbjct: 77 LGRWRLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRGDR 136
Query: 109 KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
E + D G T AF+ I EGC+ C YC++P RG S I
Sbjct: 137 SPVVDISFPEIEKFDRLPEPRAEGPT-AFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDI 195
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSN-------IARLIKKLSQIAGLKRIRIGS 221
L ++ L ++GV+EV L G NV ++ RG N A L++ ++ I G+ RIR +
Sbjct: 196 LFEIAQLAAQGVREVNLLGQNVNAW---RGENYDGTTGTFADLLRLVAAIDGIDRIRFTT 252
Query: 222 LEPNQINDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASK 278
P + D+ +E+ + L LH+ +Q D +L M R + + ++ + A
Sbjct: 253 SHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARP 312
Query: 279 NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDS 338
+ I +DFIVG PGE+ FEK K + + + FI+S R TP++ M D V E+
Sbjct: 313 DIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEK 372
Query: 339 KKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
K+RL +++ I +A + L T + LVE
Sbjct: 373 KQRLYILQERI--NQQAMAWSRRMLGTTQRILVE 404
>ref|NP_308726.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_415194.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P77645|YLEA_ECOLI Hypothetical protein yleA
pir||C64801 yleA protein - Escherichia coli
gb|AAB40863.1| (U82598) HI0019 homolog [Escherichia coli]
gb|AAC73762.1| (AE000170) orf, hypothetical protein [Escherichia coli K12]
dbj|BAB34122.1| (AP002552) hypothetical protein [Escherichia coli O157:H7]
Length = 474
Score = 149 bits (375), Expect = 8e-35
Identities = 113/394 (28%), Positives = 191/394 (47%), Gaps = 29/394 (7%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLK---DFSTTLEEQEADIIIINSCTVTNGADSAV--- 55
KK++ KT+GC+ N +D+ M++ L + T +EAD++++N+C++ A V
Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62
Query: 56 --RSYAKKMARLDKEVLFTGCGVKTQGKELFEKG-FLKGVFG----HDNKEKINALLQEK 108
R K D + GC +G+ + ++ ++ +FG H E IN++ ++
Sbjct: 63 LGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRGDR 122
Query: 109 KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
E + D G T AF+ I EGC+ C YC++P RG S I
Sbjct: 123 SPVVDISFPEIEKFDRLPEPRAEGPT-AFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDI 181
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSN-------IARLIKKLSQIAGLKRIRIGS 221
L ++ L ++GV+EV L G NV ++ RG N A L++ ++ I G+ RIR +
Sbjct: 182 LFEIAQLAAQGVREVNLLGQNVNAW---RGENYDGTTGSFADLLRLVAAIDGIDRIRFTT 238
Query: 222 LEPNQINDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASK 278
P + D+ +E+ + L LH+ +Q D +L M R + + ++ + A
Sbjct: 239 SHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNLMGRTHTALEYKAIIRKLRAARP 298
Query: 279 NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDS 338
+ I +DFIVG PGE+ FEK K + + + FI+S R TP++ M D V E+
Sbjct: 299 DIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEK 358
Query: 339 KKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
K+RL +++ I +A + L T + LVE
Sbjct: 359 KQRLYILQERI--NQQAMAWSRRMLGTTQRILVE 390
>ref|NP_459662.1| (NC_003197) methylthiolation of isopentenylated A37 derivatives in
rRNA [Salmonella typhimurium LT2]
emb|CAB62263.1| (AJ249116) MiaB protein [Salmonella typhimurium]
gb|AAL19621.1| (AE008727) methylthiolation of isopentenylated A37 derivatives in
rRNA [Salmonella typhimurium LT2]
Length = 474
Score = 149 bits (375), Expect = 8e-35
Identities = 113/394 (28%), Positives = 191/394 (47%), Gaps = 29/394 (7%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLK---DFSTTLEEQEADIIIINSCTVTNGADSAV--- 55
KK++ KT+GC+ N +D+ M++ L + T +EAD++++N+C++ A V
Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFHQ 62
Query: 56 --RSYAKKMARLDKEVLFTGCGVKTQGKELFEKG-FLKGVFG----HDNKEKINALLQEK 108
R K D + GC +G+ + ++ ++ +FG H E IN++ ++
Sbjct: 63 LGRWRLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMINSVRGDR 122
Query: 109 KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
E + D G T AF+ I EGC+ C YC++P RG S I
Sbjct: 123 SPVVDISFPEIEKFDRLPEPRAEGPT-AFVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDI 181
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSN-------IARLIKKLSQIAGLKRIRIGS 221
L ++ L ++GV+EV L G NV ++ RG N A L++ ++ I G+ RIR +
Sbjct: 182 LFEIAQLAAQGVREVNLLGQNVNAW---RGENYDGTTGTFADLLRLVAAIDGIDRIRFTT 238
Query: 222 LEPNQINDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASK 278
P + D+ +E+ + L LH+ +Q D +L M R + + ++ + A
Sbjct: 239 SHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRAARP 298
Query: 279 NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDS 338
+ I +DFIVG PGE+ FEK K + + + FI+S R TP++ M D V E+
Sbjct: 299 DIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPEEEK 358
Query: 339 KKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
K+RL +++ I +A + L T + LVE
Sbjct: 359 KQRLYILQERI--NQQAMAWSRRMLGTTQRILVE 390
>ref|NP_518652.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD14059.1| (AL646059) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 457
Score = 147 bits (371), Expect = 2e-34
Identities = 105/369 (28%), Positives = 174/369 (46%), Gaps = 20/369 (5%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENL---KDFSTTLEEQEADIIIINSCTVTNGADSAV-- 55
MKKV+ KTFGC+ N +D+ M++ L + T ++AD+I+ N+C+V A V
Sbjct: 1 MKKVFIKTFGCQMNEYDSDKMADVLNAAEGLVPTDTPEDADVILFNTCSVREKAQEKVFS 60
Query: 56 ---RSYAKKMARLDKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQEKKRF 111
R A K D V GC +G + + ++ VFG ++ L+ ++R
Sbjct: 61 DLGRVKALKARNPDLVVGVGGCVASQEGASIVARAPYVDVVFGPQTLHRLPELIDARRRT 120
Query: 112 F---IDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
+D + + V AF+ I EGC C+YC++P RG S +
Sbjct: 121 GRPQVDVSFPEIEKFDHLPPARVEGPSAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDV 180
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSY-----GKDRGSNIARLIKKLSQIAGLKRIRIGSLE 223
L +V L +GV+EV L G NV +Y G ++ A L++ +++I G++RIR +
Sbjct: 181 LAEVAGLAEQGVREVTLLGQNVNAYIGKMGGTSERADFALLLEYVAEIPGIERIRYTTSH 240
Query: 224 PNQINDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNF 280
P + +E + L HLH+ +QH D +L M R + ++ + + +
Sbjct: 241 PKEFTARLIEAYATNRKLVDHLHLPVQHGSDRILMAMKRGYTVLEYKSIIRKLRAIRPDI 300
Query: 281 AIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKK 340
+I TDFIVG PGE+ + F K + + + FIYS R TP++ + D +
Sbjct: 301 SIATDFIVGFPGETDADFAKTMDLVHEIGYDNSFSFIYSPRPGTPAANLHDDTPHAVKLE 360
Query: 341 RLNAIKDLI 349
RL ++ I
Sbjct: 361 RLKHLQATI 369
>ref|NP_384511.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC41842.1| (AL591783) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 472
Score = 147 bits (370), Expect = 3e-34
Identities = 109/398 (27%), Positives = 189/398 (47%), Gaps = 34/398 (8%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
+KV+ KT+GC+ N++D+ MS+ L + T ++AD +++N+C + A V S
Sbjct: 22 RKVFVKTYGCQMNVYDSDRMSDALSRDGYVATDVLEDADFVLLNTCHIREKAAEKVYSEL 81
Query: 60 KKMARLDK-------EVLF--TGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQEKK 109
++ L K E+L GC + +G E+ + + V G ++ L+ +
Sbjct: 82 GRLRELKKAKALEGREMLIGVAGCVAQAEGDEILRRVPAVDLVIGPQTYHRLPDALKRAR 141
Query: 110 --------RFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRAR 161
+ I+D + + G T AF+ +QEGCD C +C++P RG
Sbjct: 142 AGQRIVETEYAIEDKFVHLPAPDKAKTRARGVT-AFLTVQEGCDKFCTFCVVPYTRGSEV 200
Query: 162 SFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKD----RGSNIARLIKKLSQIAGLKRI 217
S +I+ + L GV+E+ L G NV ++ + R ++ L+++L +I GL R+
Sbjct: 201 SRPVAQIVAEAEKLVEGGVREITLLGQNVNAWHGEGPHGREWSLGDLLRRLGEIDGLARL 260
Query: 218 RIGSLEPNQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI- 275
R + P ++D +E L +LH+ +Q D +L+ MNRR+ L+E I
Sbjct: 261 RYTTSHPRDMDDSLIEAHRSMAKLMPYLHLPVQSGSDRILKAMNRRHTAAEYLALVERIR 320
Query: 276 -ASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVS 334
A + A+ DFIVG PGE+ FE + +E + F YS R TP + + + V
Sbjct: 321 AAQPDLALSGDFIVGFPGETDQDFEDTLRLVEEVNYAQAFSFKYSTRPGTPGAELKEQVP 380
Query: 335 LEDSKKRLNAIKDLIFHKNKAF------RQLQLKLNTP 366
+ KRL ++ L+ + + F R++ L L P
Sbjct: 381 EDVKAKRLEILQALLVKQQRGFAEACVGREIDLLLEKP 418
>ref|NP_223389.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71902 hypothetical protein jhp0671 - Helicobacter pylori (strain J99)
gb|AAD06255.1| (AE001499) putative [Helicobacter pylori J99]
Length = 439
Score = 145 bits (367), Expect = 7e-34
Identities = 116/401 (28%), Positives = 203/401 (49%), Gaps = 24/401 (5%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKK 61
K++ + GC NL D++VM L +++ T + ++AD+I+IN+C A
Sbjct: 7 KQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKKADVILINTCGFIESAKQESIQTILN 66
Query: 62 MARLDKE---VLFTGC---GVKTQGKELF-EKGFLKGVFGHDNKEKINALLQEKKRFFID 114
A+ KE ++ +GC K + KEL E GV +D KI+ L+ +K+ F +
Sbjct: 67 AAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYD---KIDILIAKKQNQFSE 123
Query: 115 DNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGL 174
++H + +++ A++KI EGC+ C++C IPS +G+ +S E IL++V
Sbjct: 124 QVFLSEHYNARIITG--SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVED 181
Query: 175 LCSKGVQEVVLTGTNVGSYGKDRG--SNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFL 232
L KG +++ + S+ D+G + +LI+ + + LK RI L P+ E +
Sbjct: 182 LALKGYKDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELI 241
Query: 233 ELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS-KNFAIGTDFIVGH 290
+E+ + + + +QH D ML++M R + +LL + K I + IVGH
Sbjct: 242 GAIEDSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLNAMKQVKESFIRSTIIVGH 301
Query: 291 PGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAI-KDLI 349
P E+ S FE+ L+ ++ F +S ++T + + V + R+ A+ K +
Sbjct: 302 PEENESEFEELSAFLDEFRFDRLNIFAFSAEENT-HAYSLEKVPKKIINARIKALNKIAL 360
Query: 350 FHKNKAFRQLQLKLNTPLKALVEVQKDGE--FKALDQFFNP 388
H+N +F+ L LN P+KALVE K+GE +KA D + P
Sbjct: 361 KHQNHSFKAL---LNKPIKALVE-HKEGEYFYKARDLRWAP 397
>ref|NP_540893.1| (NC_003317) MIAB PROTEIN [Brucella melitensis]
gb|AAL53157.1| (AE009631) MIAB PROTEIN [Brucella melitensis]
Length = 467
Score = 145 bits (367), Expect = 7e-34
Identities = 109/432 (25%), Positives = 207/432 (47%), Gaps = 30/432 (6%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
+KV+ KT+GC+ N++D+Q M+++L + + T +AD++++N+C + A + S
Sbjct: 23 RKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLYSAL 82
Query: 60 KKMARLD-------KEVLF--TGCGVKTQGKELFEKG-FLKGVFGHDNKEKI-NALLQEK 108
++ ++ KE+ GC + +G+E+ + + V G ++ NAL + +
Sbjct: 83 GRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALARVR 142
Query: 109 -------KRFFIDDNLENKHLDTTMVSEFVGK-TRAFIKIQEGCDFDCNYCIIPSVRGRA 160
+ I+D E HL E + AF+ +QEGCD C +C++P RG
Sbjct: 143 GGEKVVETDYAIEDKFE--HLPAPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYTRGSE 200
Query: 161 RSFEERKILEQVGLLCSKGVQEVVLTGTNVGSY---GKD-RGSNIARLIKKLSQIAGLKR 216
S ++I+ + L GV+E+ L G NV ++ G+D R + L+ +L++I G+
Sbjct: 201 VSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFRLARIPGIAH 260
Query: 217 IRIGSLEPNQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI 275
+R + P ++D + + L +LH+ +Q D +L+ MNRR++ L+E I
Sbjct: 261 LRYTTSHPRDMDDSLIAAHRDLRQLMPYLHLPVQSGSDRILKAMNRRHKADEYLRLIERI 320
Query: 276 AS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSV 333
+ + A+ DFIVG PGE+ FE + + + + F YS R TP + + D V
Sbjct: 321 RNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKYSPRPGTPGADLDDHV 380
Query: 334 SLEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFKALDQFFNPIKIKS 393
+RL ++ L+ + AF+ + + ++ G+ + P+ I
Sbjct: 381 EEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQMVGRSPWLLPVIIDD 440
Query: 394 DKPLRASFLEIK 405
+K + +K
Sbjct: 441 NKDRVGDIIHVK 452
>ref|NP_629911.1| (NC_003888) conserved hypothetical protein SC4H2.08 [Streptomyces
coelicolor A3(2)]
pir||T35107 hypothetical protein SC4H2.08 SC4H2.08 - Streptomyces coelicolor
emb|CAA18324.1| (AL022268) conserved hypothetical protein SC4H2.08 [Streptomyces
coelicolor A3(2)]
Length = 505
Score = 145 bits (366), Expect = 9e-34
Identities = 112/397 (28%), Positives = 195/397 (48%), Gaps = 33/397 (8%)
Query: 7 KTFGCRTNLFDTQVMSENLKDFSTTLEEQ----EADIIIINSCTVTNGADSAVRSYA--- 59
+T+GC+ N+ D++ +S L+D + +AD+++ N+C V AD+ +
Sbjct: 19 RTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKLYGNLGHL 78
Query: 60 --KKMARLDKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALL-----QEKKRF 111
KK +R ++ GC + + ++ ++ VFG N K+ LL QE+ +
Sbjct: 79 APKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERARVQEEAQV 138
Query: 112 FIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQ 171
I ++LE +T+ + A++ I GC+ C +CI+P++RG+ + IL +
Sbjct: 139 EIAESLEA--FPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPGDILAE 196
Query: 172 VGLLCSKGVQEVVLTGTNVGSYGKDRGSN--IARLIKKLSQIAGLKRIRIGSLEPNQIND 229
V L ++GV E+ L G NV +YG D G ++L++ I GL+R+R S P D
Sbjct: 197 VEALVAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRACGNIDGLERVRFTSPHPRDFTD 256
Query: 230 EFL-ELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFAIGTDF 286
+ + + E LH+ LQ D +L+ M R R + ++E + A + AI TD
Sbjct: 257 DVIAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIPHAAITTDI 316
Query: 287 IVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVS---LEDSKKRLN 343
IVG PGE+ FE+ + F YSKR TP++ M + + +++ +RL
Sbjct: 317 IVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQIPKAVVQERYERLV 376
Query: 344 AIKDLIF---HKNKAFRQLQLKLNTPLKALVEVQKDG 377
A+++ I +K + R L+L + A E +KDG
Sbjct: 377 ALQEEISWDENKKQVGRTLEL-----MVAEGEGRKDG 408
>ref|NP_207528.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||F64611 conserved hypothetical protein HP0734 - Helicobacter pylori
(strain 26695)
gb|AAD07780.1| (AE000586) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 439
Score = 145 bits (366), Expect = 9e-34
Identities = 115/401 (28%), Positives = 201/401 (49%), Gaps = 24/401 (5%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKK 61
K++ + GC NL D++VM L +++ T + + AD+I+IN+C A
Sbjct: 7 KQLCLISLGCSKNLVDSEVMLGKLYNYTLTNDAKSADVILINTCGFIESAKQESIQTILN 66
Query: 62 MARLDKE---VLFTGC---GVKTQGKELF-EKGFLKGVFGHDNKEKINALLQEKKRFFID 114
A+ KE ++ +GC K + KEL E GV +D KI+ ++ +K+ F +
Sbjct: 67 AAKDKKEGAILIASGCLSERYKDEIKELIPEVDIFTGVGDYD---KIDIMIAKKQNQFSE 123
Query: 115 DNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGL 174
++H + +++ A++KI EGC+ C++C IPS +G+ +S E IL++V
Sbjct: 124 QVFLSEHYNARIITG--SSVHAYVKISEGCNQKCSFCAIPSFKGKLQSRELDSILKEVEN 181
Query: 175 LCSKGVQEVVLTGTNVGSYGKDRG--SNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFL 232
L KG ++ + S+ D+G + +LI+ + + LK RI L P+ E +
Sbjct: 182 LALKGYTDMTFIAQDSSSFLYDKGQKDGLIQLIRAIDKQQALKSARILYLYPSSTTLELI 241
Query: 233 ELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS-KNFAIGTDFIVGH 290
+E + + + +QH D ML++M R + +LL+ + K I + IVGH
Sbjct: 242 GAIESSPIFQNYFDMPIQHISDSMLKKMRRNSSQAHHLKLLDAMKQVKESFIRSTIIVGH 301
Query: 291 PGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAI-KDLI 349
P E+ S FE+ L+ ++ F +S ++T + + V + R+ A+ K +
Sbjct: 302 PEENESEFEELSAFLDEFQFDRLNIFAFSAEENT-HAYSLEKVPKKTINARIKALNKIAL 360
Query: 350 FHKNKAFRQLQLKLNTPLKALVEVQKDGE--FKALDQFFNP 388
H+N +F+ L LN P+KALVE K+GE +KA D + P
Sbjct: 361 KHQNHSFKAL---LNKPIKALVE-NKEGEYFYKARDLRWAP 397
>ref|NP_247862.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q58277|Y867_METJA Hypothetical protein MJ0867
pir||C64408 hypothetical protein HI0019 homolog - Methanococcus jannaschii
gb|AAB98872.1| (U67530) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 427
Score = 144 bits (363), Expect = 2e-33
Identities = 109/377 (28%), Positives = 181/377 (47%), Gaps = 37/377 (9%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
+VY + +GC N DT+++ +LK F +EADI IIN+C V ++ +
Sbjct: 13 RVYVEGYGCVLNTADTEIIKNSLKKHGFEVVNNLEEADIAIINTCVVRLETENRMIYRIN 72
Query: 61 KMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENK 120
++ L KEV+ GC K ++ KGFL ++ + K +L+ N K
Sbjct: 73 ELKNLGKEVVVAGCLPKALKNKV--KGFLH-IYPRE-AHKAGEILK---------NYVEK 119
Query: 121 HLDTTMVSEFVGKTRA----FIK--------IQEGCDFDCNYCIIPSVRGRARSFEERKI 168
H + E + KT ++K I EGC +C+YCI+ RG S+ KI
Sbjct: 120 HYRMPYIEEDINKTLYKKLDYLKPSLITPLPICEGCIGNCSYCIVKIARGGLISYPREKI 179
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQ-- 226
+ + L +KG + +++T + YG D G N+A L+ +L+QI G +R+G +
Sbjct: 180 VNKAKELINKGAKCLLITAQDTACYGFDIGDNLANLLNELTQIKGEFIMRVGMMHAKNAE 239
Query: 227 -INDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIG 283
I DE +E+ + + + K LH+ LQ D +L+RM R ++++ KN
Sbjct: 240 LILDELIEVYQNEKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFT 299
Query: 284 TDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLN 343
TD IVG PGE+ F+ + L L +IH YS+RK T ++ M + + K+R
Sbjct: 300 TDIIVGFPGETEEQFQNTLEVLRELKPDYIHGAKYSQRKGTEAAKM-KQIDTKIRKRRSE 358
Query: 344 AI----KDLIFHKNKAF 356
+ ++L + NK +
Sbjct: 359 ILDKLRRELSYLNNKKY 375
>ref|NP_642776.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37312.1| (AE011883) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 452
Score = 143 bits (361), Expect = 3e-33
Identities = 99/364 (27%), Positives = 179/364 (48%), Gaps = 24/364 (6%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENL---KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
K+Y KT GC+ N +D+ M++ L + T + +EAD++++N+C++ A V S
Sbjct: 5 KLYIKTHGCQMNEYDSAKMADVLAASEGLELTDDPEEADVVLVNTCSIREKAQEKVFSQL 64
Query: 60 KKMARLD---KEVLFT--GCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQEKK---R 110
+ L K V+ GC +G+ + ++ ++ VFG ++ L++ ++ +
Sbjct: 65 GRWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGK 124
Query: 111 FFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILE 170
+D + + AF+ I EGC C++C++P RG S +L
Sbjct: 125 SQVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLV 184
Query: 171 QVGLLCSKGVQEVVLTGTNV----GSYGKDRG-----SNIARLIKKLSQIAGLKRIRIGS 221
+V L ++GV+E+ L G NV G+YG D G +++ LI+ ++QI G+ RIR +
Sbjct: 185 EVAQLAAQGVREINLLGQNVNAYRGAYGADAGDAAQYADLGLLIRTIAQIEGIGRIRFTT 244
Query: 222 LEPNQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--K 278
P + +D ++ + L +LH+ +Q D +L M R + + + +
Sbjct: 245 SHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEFKSKIRKLRAVRP 304
Query: 279 NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDS 338
+ +I +DFIVG PGE+ + FEK K +E + F+YS+R TP+S + D
Sbjct: 305 DISISSDFIVGFPGETEADFEKTMKLIEDVGFDQSFSFVYSRRPGTPASDLQDDTPEAVK 364
Query: 339 KKRL 342
+ RL
Sbjct: 365 QARL 368
>ref|NP_406146.1| (NC_003143) putative tRNA-thiotransferase [Yersinia pestis]
emb|CAC92863.1| (AJ414153) putative tRNA-thiotransferase [Yersinia pestis]
Length = 474
Score = 143 bits (361), Expect = 3e-33
Identities = 108/394 (27%), Positives = 193/394 (48%), Gaps = 29/394 (7%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD---FSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
KK++ KT+GC+ N +D+ M++ L + T +EAD++++N+C++ A V S
Sbjct: 3 KKLHIKTWGCQMNEYDSSKMADLLASTHGYQLTTIPEEADLLLLNTCSIREKAQEKVFSL 62
Query: 59 AKKMARLDKE-----VLFTGCGVKTQGKELFEKG-FLKGVFG----HDNKEKINALLQEK 108
+ L ++ + GC +G++L ++ + +FG H E IN +
Sbjct: 63 LGQWKLLKEKNPQLIIGVGGCVASQEGEQLRQRAPCVDVIFGPQTLHRLPEMINHVQGTN 122
Query: 109 KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
E + D G T AF+ I EGC+ C +C++P RG S I
Sbjct: 123 SPVVDISFPEIEKFDRLPEPRAEGPT-AFVSIMEGCNKYCTFCVVPYTRGEEVSRPSDDI 181
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGKDRGS-------NIARLIKKLSQIAGLKRIRIGS 221
L ++ L ++GV+EV L G NV +Y RG+ + A L++ ++ I G+ R+R +
Sbjct: 182 LFEIAQLAAQGVREVNLLGQNVNAY---RGATYDGDICSFAELLRLVAAIDGIDRVRFTT 238
Query: 222 LEPNQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASK 278
P + D+ +++ + L LH+ +Q D +L M R + + ++ + A
Sbjct: 239 SHPIEFTDDIIDVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLRQARP 298
Query: 279 NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDS 338
+ I +DFIVG PGE+ FE+ K + + + FIYS R TP++ + ++VS E+
Sbjct: 299 DIQISSDFIVGFPGETQQDFEQTMKLVADIHFDTSYSFIYSPRPGTPAADLPNNVSEEEK 358
Query: 339 KKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
K+RL+ ++ I +A + + T + LVE
Sbjct: 359 KQRLHILQQRI--SQQAMEISRKMVGTVQRVLVE 390
>ref|NP_282594.1| (NC_002163) hypothetical protein Cj1454c [Campylobacter jejuni]
pir||E81291 hypothetical protein Cj1454c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73877.1| (AL139078) hypothetical protein Cj1454c [Campylobacter jejuni]
Length = 439
Score = 143 bits (360), Expect = 4e-33
Identities = 99/358 (27%), Positives = 184/358 (50%), Gaps = 13/358 (3%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGAD----SAVR 56
M K+Y + GC NL D+++M +L + E +AD++I+N+C + A +A+
Sbjct: 1 MSKLYLMSLGCNKNLVDSEIMLGHLSAYELCDEPSKADVLIVNTCGFIDSAKKESINAIL 60
Query: 57 SYAKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVF-GHDNKEKINALLQEKKRFFIDD 115
++ + D ++ TGC ++ +EL ++ +F G + E+I+ ++ +K F +
Sbjct: 61 DLHEQRKK-DSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERIDEMILKKTNLFSNS 119
Query: 116 NLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLL 175
+++ + AFIKI EGC+ C++C IPS +G+ +S E I+ ++ L
Sbjct: 120 TYLQSENSKRIITG--SNSHAFIKIAEGCNQKCSFCAIPSFKGKLKSREISSIIAELKDL 177
Query: 176 CSKGVQEVVLTGTNVGSYGKDRG--SNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLE 233
++G ++ + SY D+G + RLI ++ +I G++ RI L P ++ ++
Sbjct: 178 VARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGIRAARILYLYPTSASEALIK 237
Query: 234 -LLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS-KNFAIGTDFIVGHP 291
++ + + + LQH D ML+ M R + +E+L + S N + T FIVGHP
Sbjct: 238 RIIASEIFINYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSAPNSFLRTGFIVGHP 297
Query: 292 GESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLI 349
GES + FE+ + ++ I F YSK +DT + M + V + KRL I+ ++
Sbjct: 298 GESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFDM-EQVPFKVINKRLKIIEKIV 354
>ref|NP_245938.1| (NC_002663) unknown [Pasteurella multocida]
sp|Q9L699|YA01_PASMU Hypothetical protein PM1001
gb|AAF68426.1|AF237940_1 (AF237940) conserved hypothetical protein [Pasteurella multocida]
gb|AAK03085.1| (AE006140) unknown [Pasteurella multocida]
Length = 474
Score = 143 bits (360), Expect = 4e-33
Identities = 106/391 (27%), Positives = 184/391 (46%), Gaps = 23/391 (5%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD---FSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
+K++ KT+GC+ N +D+ M++ L T +EAD++++N+C++ A V
Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLNSTHGLELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62
Query: 59 AKKMARLDKE-----VLFTGCGVKTQGKELFEKG-FLKGVFG----HDNKEKINALLQEK 108
+ L K + GC +G+ + + ++ +FG H E IN + K
Sbjct: 63 LGRWKELKKHKPGLVIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMINQIRGGK 122
Query: 109 KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
E + D G T AF+ I EGC+ C++C++P RG S +
Sbjct: 123 SSVVDVSFPEIEKFDRLPEPRAEGPT-AFVSIMEGCNKYCSFCVVPYTRGEEVSRPVDDV 181
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYG----KDRGSNIARLIKKLSQIAGLKRIRIGSLEP 224
L ++ L +GV+EV L G NV +Y D A L++ ++ I G+ R+R + P
Sbjct: 182 LFEIAQLAEQGVREVNLLGQNVNAYRGATHDDGICTFAELLRLVAAIDGIDRLRFTTSHP 241
Query: 225 NQINDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFA 281
+ D+ +++ + L LH+ +Q D +L M R + + ++ + +
Sbjct: 242 IEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLSMMKRNHTALEYKSIIRKLRAVRPEIQ 301
Query: 282 IGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKR 341
I +DFIVG PGE+ FE+ + + FIYS R TP++ M D V+ E+ K+R
Sbjct: 302 ISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDVTEEEKKQR 361
Query: 342 LNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
L ++ I N+A + + L T + LVE
Sbjct: 362 LYVLQQRI--NNQAAQFSRAMLGTEQRVLVE 390
>ref|NP_637682.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM41606.1| (AE012340) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 485
Score = 140 bits (354), Expect = 2e-32
Identities = 96/353 (27%), Positives = 175/353 (49%), Gaps = 24/353 (6%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENL---KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
K+Y KT GC+ N +D+ M++ L + T ++AD++++N+C++ A V S
Sbjct: 38 KLYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKVFSQL 97
Query: 60 KKMARLD---KEVLFT--GCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQEKK---R 110
+ L K V+ GC +G+ + ++ ++ VFG ++ L++ ++ +
Sbjct: 98 GRWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGK 157
Query: 111 FFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILE 170
+D + + AF+ I EGC C++C++P RG S +L
Sbjct: 158 SQVDISFPEIEKFDRLPEPRADGPSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLV 217
Query: 171 QVGLLCSKGVQEVVLTGTNV----GSYGKDRG-----SNIARLIKKLSQIAGLKRIRIGS 221
+V L ++GV+E+ L G NV G+YG D G +++ LI+ ++QI G+ RIR +
Sbjct: 218 EVAQLAAQGVREINLLGQNVNAYRGAYGADAGEPAQYADLGLLIRTIAQIDGIGRIRFTT 277
Query: 222 LEPNQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--K 278
P + +D ++ + L +LH+ +Q D +L M R + + + +
Sbjct: 278 SHPLEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEFKSKIRKLRAVRP 337
Query: 279 NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTD 331
+ +I +DFIVG PGE+ + F+K K +E + FIYS+R TP+S + D
Sbjct: 338 DISISSDFIVGFPGETDADFDKTMKLIEDVGFDQSFSFIYSRRPGTPASDLED 390
>ref|NP_148004.1| (NC_000854) hypothetical protein [Aeropyrum pernix]
pir||C72634 hypothetical protein APE1530 - Aeropyrum pernix (strain K1)
dbj|BAA80529.1| (AP000061) 456aa long hypothetical protein [Aeropyrum pernix]
Length = 456
Score = 140 bits (352), Expect = 4e-32
Identities = 102/356 (28%), Positives = 177/356 (49%), Gaps = 27/356 (7%)
Query: 5 YFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYAKKM 62
Y + +GC + FD +M+ L++ + ++AD+I++N+C V + + +K+
Sbjct: 27 YLEVYGCSLSEFDALIMASRLEEAGYRRVARPEDADVILVNTCAVRLDTEQRIAERLEKL 86
Query: 63 ARL---DKEVLFTGCGVKTQ----GKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDD 115
RL D++ + GC VK + + + E L + ++AL ++ +D
Sbjct: 87 -RLQLPDRKYVVAGCLVKARPGLVARLVPEASLLAPQAVERVLDAVDALESGRRLVVLDG 145
Query: 116 NLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLL 175
+ + + +++ V + IQEGC DC++CI R + RS+ R I+E+V
Sbjct: 146 RRDTRSMPQLPITDAV----VTVMIQEGCLGDCSFCITKVARRQVRSYSPRVIVERVREA 201
Query: 176 CSKGVQEVVLTGTNVGSYGKDRGS--NIARLIKK-LSQIAGLKRIRIGSLEPNQIN---D 229
KG +E+ LTGT+V YG D N+A L+ L ++ G RIR+G + P+Q+ D
Sbjct: 202 VEKGAREIRLTGTDVAVYGVDLPGKPNLADLVAAILEKVEGDYRIRVGMMTPDQVEPYLD 261
Query: 230 EFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASKNF---AIGTDF 286
L++ ++ + K+ H+ +Q D +L+ M +RN T S+ + + F I TD
Sbjct: 262 SLLDVYRDERVYKYFHLPVQSGDDEVLKIM-KRNYTVSEYKAIHRRIKSRFPDAMIATDI 320
Query: 287 IVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM---TDSVSLEDSK 339
IVGHPGE+ F + +E L +H YS R T ++ M DSV E S+
Sbjct: 321 IVGHPGETWEAFWNTVRLVEELRFEKVHLAQYSLRPHTEAASMEQVPDSVKKERSR 376
>ref|NP_438192.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|Q57163|YLEA_HAEIN Hypothetical protein HI0019
pir||D64140 conserved hypothetical protein HI0019 - Haemophilus influenzae
gb|AAC21697.1| (U32687) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 474
Score = 139 bits (351), Expect = 5e-32
Identities = 104/391 (26%), Positives = 184/391 (46%), Gaps = 23/391 (5%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD---FSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
+K++ KT+GC+ N +D+ M++ L T +EAD++++N+C++ A V
Sbjct: 3 QKLHIKTWGCQMNEYDSSKMADLLLSTHGLELTEAPEEADVLLLNTCSIREKAQEKVFHQ 62
Query: 59 AKKMARLDKE-----VLFTGCGVKTQGKELFEKG-FLKGVFG----HDNKEKINALLQEK 108
+ L K + GC +G+ + + ++ +FG H E IN + K
Sbjct: 63 LGRWKELKKNNPNLVIGVGGCVASQEGEHIRHRAPYVDIIFGPQTLHRLPEMINQIRGGK 122
Query: 109 KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
E + D G T AF+ I EGC+ C +C++P RG S +
Sbjct: 123 SSVVDVSFPEIEKFDRLPEPRAEGPT-AFVSIMEGCNKYCTFCVVPYTRGEEVSRPVDDV 181
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSY-GKDRGSNI---ARLIKKLSQIAGLKRIRIGSLEP 224
L ++ L +GV+EV L G NV +Y G I A L++ ++ I G+ R+R + P
Sbjct: 182 LFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGQICSFAELLRLVASIDGIDRLRFTTSHP 241
Query: 225 NQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFA 281
+ D+ +++ + L LH+ +Q D +L M R + + ++ + + +
Sbjct: 242 IEFTDDIIDVYRDTPELVSFLHLPVQAGSDRVLTMMKRAHTALEYKSIIRKLRAVRPDIQ 301
Query: 282 IGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKR 341
I +DFIVG PGE+ FE+ + + F+YS R TP++ M D V+ ++ K+R
Sbjct: 302 ISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFVYSARPGTPAADMPDDVTEDEKKQR 361
Query: 342 LNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
L +++ I + F + L T + LVE
Sbjct: 362 LYVLQERINQQAAQFSRRM--LGTEQRVLVE 390
>ref|NP_224460.1| (NC_000922) conserved hypothetical protein [Chlamydophila
pneumoniae CWL029]
pir||G72101 conserved hypothetical protein - Chlamydophila pneumoniae (strain
CWL029)
gb|AAD18404.1| (AE001610) conserved hypothetical protein [Chlamydophila pneumoniae
CWL029]
Length = 500
Score = 139 bits (349), Expect = 8e-32
Identities = 102/396 (25%), Positives = 195/396 (48%), Gaps = 41/396 (10%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
K++F + GC NL D++VM L + +T E ++AD +I+N+C A + Y
Sbjct: 49 KIHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLD 108
Query: 61 KMARLDKE---VLFTGCGVKTQGKELFE--------------KGFLKGVFGHDNKEKINA 103
+ + KE ++ TGC EL + L + ++ EKI+A
Sbjct: 109 HLIDVKKENAKIIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKISA 168
Query: 104 LLQEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSF 163
+ +I+ + L T K A++K+ EGC C +CIIPS++G+ RS
Sbjct: 169 ------KSYIEMGEVPRQLSTP-------KHYAYLKVAEGCRKRCAFCIIPSIKGKLRSK 215
Query: 164 EERKILEQVGLLCSKGVQEVVLTGTNVGSYGK----DRGSNIARLIKKLSQIAGLKRIRI 219
+IL++ +L +K V+E++L ++G YGK DR S + L+ +L + G +R+
Sbjct: 216 PLDQILKEFRILVNKSVKEIILIAQDLGDYGKDLSTDRSSQLESLLHELLKEPGDYWLRM 275
Query: 220 GSLEPNQINDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK 278
L P++++D ++L++ + L ++ I LQH +D +L++M R + LE + +K
Sbjct: 276 LYLYPDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAK 335
Query: 279 --NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLE 336
I + IVG PGE+ F++ + + ++ F+YS+ +TP++ + D + +
Sbjct: 336 VPQVYIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEK 395
Query: 337 DSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
+ RL + + K + Q + ++A+++
Sbjct: 396 VKESRLKILSQI--QKRNVDKHNQKLIGEKIEAVID 429
>ref|NP_298196.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||F82747 conserved hypothetical protein XF0906 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF83716.1|AE003930_6 (AE003930) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 497
Score = 139 bits (349), Expect = 8e-32
Identities = 102/374 (27%), Positives = 179/374 (47%), Gaps = 31/374 (8%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENL---KDFSTTLEEQEADIIIINSCTVTNGADSAVRSY- 58
K++ KT GC+ N +D+ M++ L + T +EADII+IN+C++ A V S
Sbjct: 49 KLFIKTHGCQMNEYDSAKMADVLTTTEALELTDNPEEADIILINTCSIREKAQEKVFSQL 108
Query: 59 ----AKKMARLDKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQ---EKKR 110
A K + D + GC +G+ + ++ ++ VFG ++ +++ E+ R
Sbjct: 109 GRWRALKTSGRDVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPDMIRARREQNR 168
Query: 111 FFIDDNL-ENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKIL 169
+D E + D G + AF+ I EGC C++C++P RG S +L
Sbjct: 169 PQVDIRFPEIEKFDHLPTPRAEGPS-AFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVL 227
Query: 170 EQVGLLCSKGVQEVVLTGTNVGSY------GKDRGSN--------IARLIKKLSQIAGLK 215
++ L ++GV+E+ L G NV +Y G +N + LI+ ++Q +
Sbjct: 228 TEIAHLATQGVREINLLGQNVNAYRGAMDPGPSNNTNPAPPPYADLGLLIRAIAQFESIG 287
Query: 216 RIRIGSLEPNQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLET 274
RIR + P + +D +E + L HLH+ +Q D +L M R + +
Sbjct: 288 RIRFTTSHPLEFSDSLVEAYRDVPQLANHLHLPVQSGSDRILSAMKRGYTALEFKSKIRK 347
Query: 275 IAS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDS 332
+ + + +I +DFI+G PGES + F+K + +E + FIYS+R TP+S + D
Sbjct: 348 LRAVRPDISISSDFIIGFPGESDTDFQKTMQLIEDIGFDQSFSFIYSRRPGTPASNLEDH 407
Query: 333 VSLEDSKKRLNAIK 346
E + RL ++
Sbjct: 408 TPDEIKRTRLEHLQ 421
>ref|NP_445054.1| (NC_002179) conserved hypothetical protein [Chlamydophila
pneumoniae AR39]
pir||A81571 conserved hypothetical protein CP0510 [imported] - Chlamydophila
pneumoniae (strain AR39)
gb|AAF38338.1| (AE002211) conserved hypothetical protein [Chlamydophila pneumoniae
AR39]
Length = 503
Score = 139 bits (349), Expect = 8e-32
Identities = 102/396 (25%), Positives = 195/396 (48%), Gaps = 41/396 (10%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
K++F + GC NL D++VM L + +T E ++AD +I+N+C A + Y
Sbjct: 52 KIHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLD 111
Query: 61 KMARLDKE---VLFTGCGVKTQGKELFE--------------KGFLKGVFGHDNKEKINA 103
+ + KE ++ TGC EL + L + ++ EKI+A
Sbjct: 112 HLIDVKKENAKIIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKISA 171
Query: 104 LLQEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSF 163
+ +I+ + L T K A++K+ EGC C +CIIPS++G+ RS
Sbjct: 172 ------KSYIEMGEVPRQLSTP-------KHYAYLKVAEGCRKRCAFCIIPSIKGKLRSK 218
Query: 164 EERKILEQVGLLCSKGVQEVVLTGTNVGSYGK----DRGSNIARLIKKLSQIAGLKRIRI 219
+IL++ +L +K V+E++L ++G YGK DR S + L+ +L + G +R+
Sbjct: 219 PLDQILKEFRILVNKSVKEIILIAQDLGDYGKDLSTDRSSQLESLLHELLKEPGDYWLRM 278
Query: 220 GSLEPNQINDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK 278
L P++++D ++L++ + L ++ I LQH +D +L++M R + LE + +K
Sbjct: 279 LYLYPDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAK 338
Query: 279 --NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLE 336
I + IVG PGE+ F++ + + ++ F+YS+ +TP++ + D + +
Sbjct: 339 VPQVYIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEK 398
Query: 337 DSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
+ RL + + K + Q + ++A+++
Sbjct: 399 VKESRLKILSQI--QKRNVDKHNQKLIGEKIEAVID 432
>ref|NP_300310.1| (NC_002491) conserved hypothetical protein [Chlamydophila
pneumoniae J138]
dbj|BAA98461.1| (AP002545) conserved hypothetical protein [Chlamydophila pneumoniae
J138]
Length = 500
Score = 139 bits (349), Expect = 8e-32
Identities = 102/396 (25%), Positives = 195/396 (48%), Gaps = 41/396 (10%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
K++F + GC NL D++VM L + +T E ++AD +I+N+C A + Y
Sbjct: 49 KIHFISLGCSRNLVDSEVMLGILLKAGYESTNEIEDADYLILNTCAFLKSARDEAKDYLD 108
Query: 61 KMARLDKE---VLFTGCGVKTQGKELFE--------------KGFLKGVFGHDNKEKINA 103
+ + KE ++ TGC EL + L + ++ EKI+A
Sbjct: 109 HLIDVKKENAKIIVTGCMTSNHKDELKPWMSHIHYLLGSGDVENILSAIESRESGEKISA 168
Query: 104 LLQEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSF 163
+ +I+ + L T K A++K+ EGC C +CIIPS++G+ RS
Sbjct: 169 ------KSYIEMGEVPRQLSTP-------KHYAYLKVAEGCRKRCAFCIIPSIKGKLRSK 215
Query: 164 EERKILEQVGLLCSKGVQEVVLTGTNVGSYGK----DRGSNIARLIKKLSQIAGLKRIRI 219
+IL++ +L +K V+E++L ++G YGK DR S + L+ +L + G +R+
Sbjct: 216 PLDQILKEFRILVNKSVKEIILIAQDLGDYGKDLSTDRSSQLESLLHELLKEPGDYWLRM 275
Query: 220 GSLEPNQINDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK 278
L P++++D ++L++ + L ++ I LQH +D +L++M R + LE + +K
Sbjct: 276 LYLYPDEVSDGIIDLMQSNPKLLPYVDIPLQHINDRILKQMRRTTSREQILGFLEKLRAK 335
Query: 279 --NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLE 336
I + IVG PGE+ F++ + + ++ F+YS+ +TP++ + D + +
Sbjct: 336 VPQVYIRSSVIVGFPGETQEEFQELADFIGEGWIDNLGIFLYSQEANTPAAELPDQIPEK 395
Query: 337 DSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
+ RL + + K + Q + ++A+++
Sbjct: 396 VKESRLKILSQI--QKRNVDKHNQKLIGEKIEAVID 429
>ref|NP_579641.1| (NC_003413) hypothetical protein [Pyrococcus furiosus DSM 3638]
gb|AAL82036.1| (AE010285) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 425
Score = 138 bits (348), Expect = 1e-31
Identities = 94/336 (27%), Positives = 166/336 (48%), Gaps = 15/336 (4%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
M KVY + +GC N D ++M+ L + E+ ADI+++NSC V + + +
Sbjct: 1 MTKVYIENYGCARNRADGEIMAGLLLSSGYEIVEGEENADIVVVNSCAVKDPTEVKIARR 60
Query: 59 AKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKI----NALLQEKKRFFID 114
+++ K+V+ TGC + E+ + V G + ++I L+ +K +
Sbjct: 61 IRELLDRGKKVIVTGCLPHVNPDAIDER--VSAVLGVKSIDRIVQAVEYALRGEKLISVP 118
Query: 115 DNLENKHLDTTMVSEFVGKTRAFI-KIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
D ++LD + FI I EGC C YC S RG +S+ KI+E V
Sbjct: 119 D-WRKRNLDKLDFPRLSPRGVHFILPIAEGCLNGCTYCATRSARGVLKSYSPEKIVEWVK 177
Query: 174 LLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQI---NDE 230
+G +E+ L+ + G YG D G+N+A+L+ +++ I G RIR+G + PN + DE
Sbjct: 178 WAIRQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRIRVGMMNPNHVLKFLDE 237
Query: 231 FLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIV 288
+E +++ + K LH+ +Q + +L RM R + E++ + + + TD IV
Sbjct: 238 LIEAYKDEKVYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAFRREFPDLNLHTDIIV 297
Query: 289 GHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDT 324
G PGES F+++ + ++ + ++ YS R T
Sbjct: 298 GFPGESEEAFQRSLELIKRIKPDKVNVSRYSPRPGT 333
>emb|CAA10332.1| (AJ131242) hypothetical protein [Wolinella succinogenes]
Length = 439
Score = 137 bits (344), Expect = 3e-31
Identities = 98/366 (26%), Positives = 178/366 (47%), Gaps = 18/366 (4%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYA-K 60
KK++ + GC NL D++VM LK + T ++AD+II+N+C A S +
Sbjct: 3 KKLHLISLGCTKNLVDSEVMLGRLKSYEITPLIEKADVIIVNTCGFIEAAKQESLSVLFE 62
Query: 61 KMARLDKEVLFTGCGVKTQG------KELFEKGFLKGVFGHDNKEKINALLQEKKRFFID 114
+ R K + G ++ +E+ E + GV +D KI+ +++E++ F
Sbjct: 63 ALERRKKGAILVASGCLSERYHEELLREIPEIDIITGVGDYD---KIDQMVRERQGFHSG 119
Query: 115 DN-LENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
+ L ++ + + V A++K+ EGC+ C++C IP +G+ S L++V
Sbjct: 120 EVFLASEEQERVITGSSV---HAYVKLSEGCNQTCSFCAIPQFKGKLHSRTLESTLKEVK 176
Query: 174 LLCSKGVQEVVLTGTNVGSYGKDRG--SNIARLIKKLSQIAGLKRIRIGSLEPNQINDEF 231
L +KG + + SY +DRG + +LI L + G+K RI L P+ + +
Sbjct: 177 NLIAKGFTDFSFIAQDTSSYLRDRGEKEGLIQLIGALDSLEGIKSARILYLYPSTASAKL 236
Query: 232 LELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS-KNFAIGTDFIVG 289
++ +++ ++ + + LQH + ML+RM R K +ELLE + + + T I+G
Sbjct: 237 IQAIQKSQVVQNYFDMPLQHIAESMLKRMKRGANQKKHKELLERMRQVPHSFVRTTLILG 296
Query: 290 HPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLI 349
HPGES FE+ + LE ++ F YS + T + M + RL + +I
Sbjct: 297 HPGESEEEFEELCRFLEEFRFDRVNLFAYSDEEGTSAHKMEGKLDKRVINARLKRLDKII 356
Query: 350 FHKNKA 355
+++A
Sbjct: 357 QKQHRA 362
>ref|NP_213577.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O67016|Y849_AQUAE Hypothetical protein AQ_849
pir||E70373 conserved hypothetical protein aq_849 - Aquifex aeolicus
gb|AAC06982.1| (AE000710) hypothetical protein [Aquifex aeolicus]
Length = 432
Score = 137 bits (344), Expect = 3e-31
Identities = 115/438 (26%), Positives = 215/438 (48%), Gaps = 38/438 (8%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKDFSTTL--EEQEADIIIINSCTVTNGADSAVRSYAK 60
K+ + GC NL D++++ LK L +EAD+II+N+C A
Sbjct: 2 KIGVVSLGCAKNLVDSEILLGKLKGAGVELTPNPEEADVIIVNTCGFIEPAKLESIETIL 61
Query: 61 KMARLDKEVLFTGCGVKTQGKELFEKGF--LKGVFGHDN-KEKINAL-LQEKKRFFIDDN 116
+ A KEV+ GC V+ +EL EK +K FG ++ E +N L L+EKK
Sbjct: 62 EFAESGKEVIVMGCLVERYKEEL-EKEIPEVKAYFGTESWNEILNYLGLKEKK------- 113
Query: 117 LENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLC 176
E K + +T ++ A++KI EGC+ C++C IP +RGR RS + +I+++ L
Sbjct: 114 -EIKRILSTP------RSYAYLKIAEGCNRLCSFCAIPKIRGRHRSRKIEEIVDEAKFLA 166
Query: 177 SKGVQEVVLTGTNVGSYGKD--RGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLE- 233
+GV+E+ + + YGKD + + L++ L ++ G+K IR+ L P +++++ ++
Sbjct: 167 DQGVKEICVVSQDTTYYGKDLYKEYKLVELLEGLEKVEGIKWIRLLYLYPTEVHEDLIDY 226
Query: 234 LLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIVGHP 291
+ + + + + LQH D +L+ M R K R L+E I K N T FIVG P
Sbjct: 227 VANSEKVLPYFDVPLQHVSDRVLKDMRRGYDGKFVRNLIENIRKKIENAVFRTTFIVGFP 286
Query: 292 GESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAI----KD 347
ES F++ K +E + F YS + T + + D + E ++R + +
Sbjct: 287 TESEEDFKELKKFVEEGHFHWLGVFTYSPEEGTHAYPLGDPIPREVKEERREELMAIQRG 346
Query: 348 LIFHKNKAF--RQLQLKLNTPLKALVEVQKDGEFKALDQFFNPIKIKSDKPLRASFL--- 402
+ KN+ F +++++ ++ + V K + + + ++S + L++ +
Sbjct: 347 ITRKKNEEFLGKEIEVLIDGYEEEFSFVPKGRAYFQAPEVDGVVYVESSRDLKSGDILKV 406
Query: 403 ---EIKEYEIKERENHAV 417
++ +Y++ R+ A+
Sbjct: 407 KVTQVADYDLAGRDTEAL 424
>ref|NP_252669.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
sp|Q51470|Y3I0_PSEAE Hypothetical protein PA3980
pir||F83147 conserved hypothetical protein PA3980 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG07367.1|AE004816_3 (AE004816) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 446
Score = 137 bits (344), Expect = 3e-31
Identities = 102/368 (27%), Positives = 174/368 (46%), Gaps = 21/368 (5%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD---FSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
KK++ +T GC+ N +D+ M++ L + T EAD+I++N+C++ A V S
Sbjct: 3 KKLFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKAQEKVFSK 62
Query: 59 AKKMARLDKE-----VLFTGCGVKTQGKELFEKG-FLKGVFG----HDNKEKINALLQEK 108
L ++ + GC +G + E+ ++ VFG H E I+A +
Sbjct: 63 LGMWRELKQQNPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAARSTR 122
Query: 109 KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
K E + D G T AF+ + EGC C++C++P RG S +
Sbjct: 123 KPQVDVSFPEIEKFDRLPEPRVDGPT-AFVSVMEGCSKYCSFCVVPYTRGEEVSRPFDDV 181
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYG----KDRGSNIARLIKKLSQIAGLKRIRIGSLEP 224
+ +V L GV+EV L G NV + R ++ A L++ ++ + G++RIR + P
Sbjct: 182 IAEVIHLAENGVREVTLLGQNVNGFRGLTHDGRLADFAELLRVVAAVDGIERIRYTTSHP 241
Query: 225 NQINDEFLEL-LEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFA 281
+ +D ++ E L K +H+ +Q D +L M R + + + + A +
Sbjct: 242 LEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIRKLKAAVPDIC 301
Query: 282 IGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKR 341
I +DFIVG PGE+ FE+ K +E + FIYS R TP++ + D + E K+R
Sbjct: 302 ISSDFIVGFPGETEKDFEQTMKLVEDVGFDFSFSFIYSARPGTPAADLADDLPEEVKKQR 361
Query: 342 LNAIKDLI 349
L ++ I
Sbjct: 362 LQILQSRI 369
>ref|NP_230609.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||E82261 conserved hypothetical protein VC0962 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94124.1| (AE004177) conserved hypothetical protein [Vibrio cholerae]
Length = 474
Score = 137 bits (344), Expect = 3e-31
Identities = 113/431 (26%), Positives = 205/431 (47%), Gaps = 26/431 (6%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLK---DFSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
KK+ KT+GC+ N +D+ M++ L + T +EAD++++N+C++ A V
Sbjct: 3 KKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQ 62
Query: 59 AKKMARL-DKE----VLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQEKKRF- 111
+ L DK+ + GC +G + ++ ++ +FG ++ ++++ +
Sbjct: 63 LGRWKTLKDKKPGVVIGVGGCVATQEGDSIRDRAPYVDVIFGPQTLHRLPEMIKQSQTSD 122
Query: 112 --FIDDNL-ENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
+D + E + D G T AF+ I EGC C YC++P RG S +
Sbjct: 123 APVMDISFPEIEKFDRLPEPRAEGPT-AFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDV 181
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSY---GKDRG-SNIARLIKKLSQIAGLKRIRIGSLEP 224
L ++ L +GV+EV L G NV +Y D G + A L++ ++ I G+ RIR + P
Sbjct: 182 LFEIAQLAEQGVREVNLLGQNVNAYRGATHDGGICSFAELLRLVATIDGIDRIRFTTSHP 241
Query: 225 NQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFA 281
+ D+ + + E+ L LH+ +Q D +L M R + + ++ + A +
Sbjct: 242 LEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQ 301
Query: 282 IGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKR 341
I +DFIVG PGE+ F+ K + + FI+S R TP++ +S E K+R
Sbjct: 302 ISSDFIVGFPGETDKDFQDTMKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKER 361
Query: 342 LNAIKDLIFHKNKAFRQLQLKLNTPLKALVE--VQKD-GEFKALDQFFNPIKIKSDKPLR 398
L ++ I ++A R +L L T + LVE +KD E + + + + L
Sbjct: 362 LYELQQQI--NSQAMRYSRLMLGTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPDLI 419
Query: 399 ASFLEIKEYEI 409
F+++K ++
Sbjct: 420 GQFVDVKIVDV 430
>ref|NP_562591.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81381.1| (AP003191) conserved hypothetical protein [Clostridium perfringens]
Length = 445
Score = 136 bits (343), Expect = 4e-31
Identities = 106/364 (29%), Positives = 180/364 (49%), Gaps = 34/364 (9%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLK-DFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKK 61
KV + GC N D+++M ++ ++ T +EADIII+N+C A +
Sbjct: 5 KVGMVSLGCDKNRVDSEIMLGMVQNEYELTNNPKEADIIIVNTCGFIEKAKQESINTILD 64
Query: 62 MARLD-----KEVLFTGCGVKTQGKELFE-KGFLKGVFGHDNKEKINALLQEKKRFFIDD 115
MA+ K ++ TGC + G EL E + + G ++ KIN + FI+
Sbjct: 65 MAKYKTSHNCKLLIATGCLTQRYGDELLELMPEIDIMLGVNDYAKINEAIMN----FING 120
Query: 116 NLENKHLDTTMVSEF----------VGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEE 165
N N+ + T S+ K A+++I EGCD C YCIIP +RG+ RS
Sbjct: 121 N--NEKVKATNYSDVSINEGLRLITTDKATAYLRIAEGCDNFCTYCIIPKIRGKFRSRAL 178
Query: 166 RKILEQVGLLCSKGVQEVVLTGTNVGSYGKD--RGSNIARLIKKLSQIAGLKRIRIGSLE 223
I+E+ L GV+E++L + +YG D + ++++L++I G++ IR+
Sbjct: 179 ESIVEEAKKLAENGVKELILIAQDTTNYGIDIYGEKKLHLVLRELAKIEGIEWIRVLYCY 238
Query: 224 PNQINDEFL-ELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSD-----RELLETIAS 277
P I DE + E+ D + +L + +QH + +L+RM R+ TK + +L + +
Sbjct: 239 PEAIYDELIKEISVNDKVCNYLDLPIQHISNNVLKRMGRKT-TKEEIIGKINDLRKNV-- 295
Query: 278 KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLED 337
N + T IVG PGES F + ++++ L + F YS+ + TP+++M D + E
Sbjct: 296 PNIVLRTSLIVGFPGESCEDFNELKDFIKTIKLDKVGVFTYSREEGTPAAIMEDQIDEEV 355
Query: 338 SKKR 341
K R
Sbjct: 356 KKAR 359
>ref|NP_127405.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
sp|Q9UXX9|YB34_PYRAB Hypothetical protein PAB1134
pir||D75024 hypothetical protein PAB1134 - Pyrococcus abyssi (strain Orsay)
emb|CAB50634.1| (AJ248288) hypothetical protein [Pyrococcus abyssi]
Length = 425
Score = 136 bits (343), Expect = 4e-31
Identities = 90/336 (26%), Positives = 164/336 (48%), Gaps = 15/336 (4%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSE--NLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
M K+Y + +GC N D ++M+ +L + E +I+++NSC V + + +
Sbjct: 1 MVKIYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARR 60
Query: 59 AKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKI----NALLQEKKRFFID 114
K++ K+V+ TGC + E+ + G+ G + ++I L+ +K +
Sbjct: 61 IKELLDSGKKVIVTGCLPHVNPDVIDER--VSGILGVKSIDRIIQAVEYALRGEKLISVP 118
Query: 115 DNLENKHLDTTMVSEFVGKTRAFI-KIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
D ++LD +T FI I EGC C YC RG +S+ KI+ V
Sbjct: 119 D-WRKRNLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVK 177
Query: 174 LLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQI---NDE 230
+G +E+ L+ + G YG D G+N+A+L+ +++ I G R+R+G + PN + DE
Sbjct: 178 WAIKQGYKEIWLSAEDTGCYGFDIGTNLAKLLDEITAIEGEFRVRVGMMNPNHVLKFLDE 237
Query: 231 FLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIV 288
+E +++ + K LH+ +Q + +L RM R + E+++ K + + TD IV
Sbjct: 238 LIEAYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIV 297
Query: 289 GHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDT 324
G PGE F+++ + + + ++ YS R T
Sbjct: 298 GFPGEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGT 333
>ref|NP_348438.1| (NC_003030) Predicted Fe-S oxidoreductase [Clostridium
acetobutylicum]
gb|AAK79778.1|AE007690_5 (AE007690) Predicted Fe-S oxidoreductase [Clostridium
acetobutylicum]
Length = 445
Score = 135 bits (340), Expect = 9e-31
Identities = 102/387 (26%), Positives = 196/387 (50%), Gaps = 31/387 (8%)
Query: 8 TFGCRTNLFDTQVMSENL-KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKKMARLD 66
+ GC N D++++ ++ +D+ + +EAD+I++N+C A + +M +
Sbjct: 10 SLGCDKNRVDSEIILGSMNRDYEIVNDPREADVILVNTCGFIESAKQESINTILEMNKYK 69
Query: 67 -----KEVLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE-----KKRFFI-- 113
K ++ TGC + GKEL E + + G ++ + ++ +++ KK +
Sbjct: 70 EKYNCKMLIATGCLTQRYGKELKELVPEIDAILGVNDYKSLDDAIEDFFNLGKKDIYCNY 129
Query: 114 -DDNL-ENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQ 171
D ++ E K + TT G+ ++++I EGC+ C+YCIIP +RG+ RS + I+++
Sbjct: 130 SDQSINEGKRIITT------GEYSSYVRISEGCNNSCSYCIIPKIRGKYRSRQFENIIDE 183
Query: 172 VGLLCSKGVQEVVLTGTNVGSYGKD--RGSNIARLIKKLSQIAGLKRIRIGSLEPNQIND 229
V L G +EV+L + YG D + L+K++S I G++ IRI P +I +
Sbjct: 184 VRELSENGTKEVILIAQDTTRYGVDLYGRKRLHELLKEMSLIQGIEWIRIMYCYPEEITE 243
Query: 230 EFL-ELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDF 286
E + E+ + + ++ + +QH D +L+ M R+ R + +E I K N AI T
Sbjct: 244 ELIEEIASNEKVCNYIDMPIQHISDNILKNMFRKTRKSEILDKVEKIRKKVPNIAIRTSL 303
Query: 287 IVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIK 346
IVG PGE+ F + ++ + ++ F YS+ + T ++LM ++ +KR +
Sbjct: 304 IVGFPGETEGDFNELCDFVKDANINNLGVFRYSREEGTKAALMPMQIADTVKEKR---EE 360
Query: 347 DLIFHKNKAFRQLQL-KLNTPLKALVE 372
D++ + + + L K+ K +VE
Sbjct: 361 DIMLIQQQVSKNLNAKKIGKVYKVIVE 387
>pir||S57900 conserved hypothetical protein 2 (hemL 3' region) - Pseudomonas
aeruginosa
emb|CAA57577.1| (X82072) orf2 [Pseudomonas aeruginosa]
Length = 446
Score = 135 bits (340), Expect = 9e-31
Identities = 101/368 (27%), Positives = 173/368 (46%), Gaps = 21/368 (5%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD---FSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
KK++ +T GC+ N +D+ M++ L + T EAD+I++N+C++ V S
Sbjct: 3 KKLFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKVQEKVCSK 62
Query: 59 AKKMARLDKE-----VLFTGCGVKTQGKELFEKG-FLKGVFG----HDNKEKINALLQEK 108
L ++ + GC +G + E+ ++ VFG H E I+A +
Sbjct: 63 LGMWRELKQQNPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAARSTR 122
Query: 109 KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
K E + D G T AF+ + EGC C++C++P RG S +
Sbjct: 123 KPQVDVSFPEIEKFDRLPEPRVDGPT-AFVSVMEGCSKYCSFCVVPYTRGEEVSRPFDDV 181
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYG----KDRGSNIARLIKKLSQIAGLKRIRIGSLEP 224
+ +V L GV+EV L G NV + R ++ A L++ ++ + G++RIR + P
Sbjct: 182 IAEVIHLAENGVREVTLLGQNVNGFRGLTHDGRLADFAELLRVVAAVDGIERIRYTTSHP 241
Query: 225 NQINDEFLEL-LEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFA 281
+ +D ++ E L K +H+ +Q D +L M R + + + + A +
Sbjct: 242 LEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKSRIRKLKAAVPDIC 301
Query: 282 IGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKR 341
I +DFIVG PGE+ FE+ K +E + FIYS R TP++ + D + E K+R
Sbjct: 302 ISSDFIVGFPGETEKDFEQTMKLVEDVGFDFSFSFIYSARPGTPAADLADDLPEEVKKQR 361
Query: 342 LNAIKDLI 349
L ++ I
Sbjct: 362 LQILQSRI 369
>ref|NP_219191.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
sp|O83735|Y754_TREPA Hypothetical protein TP0754
pir||E71284 conserved hypothetical protein TP0754 - syphilis spirochete
gb|AAC65721.1| (AE001247) conserved hypothetical protein [Treponema pallidum]
Length = 456
Score = 135 bits (340), Expect = 9e-31
Identities = 104/400 (26%), Positives = 194/400 (48%), Gaps = 36/400 (9%)
Query: 5 YFKTFGCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKKM 62
+F+T+GC+ N+ ++ + + L + ++ ++ Q D++IIN+C+V A++ V
Sbjct: 4 FFETYGCQMNVAESASVEQLLLARGWTKAVDAQTCDVLIINTCSVRITAETRVFGRLGLF 63
Query: 63 ARLDKE----VLFTGCGVKTQGKELFEK----GFLKGVFGHDNKEKI-----NALLQEKK 109
+ L K+ ++ GC + ++ ++ ++ G F H E I L Q+
Sbjct: 64 SSLKKKRAFFIILMGCMAQRLHDKIQQQFPRIDYVVGTFAHARFESIFQEIEQKLTQKDY 123
Query: 110 RF-FIDDNLENKHLD-----TTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSF 163
RF FI + + + SE G ++FI I GC+ C++CI+P VRGR S
Sbjct: 124 RFEFISERYREHPVSGYRFFASSYSE--GSFQSFIPIMNGCNNFCSFCIVPYVRGREISR 181
Query: 164 EERKILEQVGLLCSKGVQEVVLTGTNVGSY-GKDRGSNIA-------RLIKKLSQIAGLK 215
+ IL++V +L KGV+E+ L G NV SY G+DR NI L+++ +K
Sbjct: 182 DLDAILQEVDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHLVRRCEVKDQIK 241
Query: 216 RIRIGSLEPNQINDEFL-ELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLET 274
IR S P ++D+ + + +E L + +H+ +QH + +L+RM R + L+
Sbjct: 242 WIRFVSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGANGVLKRMRRSYTREQYLSLVGK 301
Query: 275 IASK--NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDS 332
+ + N A+ TD ++G PGE+ FE+ + + + Y+ R+ TP+ D
Sbjct: 302 LKASVPNVALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDR 361
Query: 333 VSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
+ RL + + + ++++ ++ L LVE
Sbjct: 362 IPDATRIARLQRV--IALQMSTTLKKMRARVGKTLPVLVE 399
>ref|NP_650002.1| (NM_141745) CG6345 gene product [Drosophila melanogaster]
gb|AAF54531.1| (AE003687) CG6345 gene product [Drosophila melanogaster]
gb|AAL48716.1| (AY071094) RE15838p [Drosophila melanogaster]
Length = 583
Score = 134 bits (337), Expect = 2e-30
Identities = 107/387 (27%), Positives = 174/387 (44%), Gaps = 46/387 (11%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
+KV+F+ +GC+ N DT+V+ LK+ + E +EAD+I++ +C V +GA+ +R+
Sbjct: 92 RKVHFEVYGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNRL 151
Query: 60 KKMARLDK---------EVLFTGCGVKTQGKELFEKGFLKGVF-GHDNKEKINALLQEKK 109
K + + ++ GC + ++L E+ V G D+ + + LL +
Sbjct: 152 KHLRAMKNKRSTRRHPLQLTLLGCMAERLKEKLLEQEQCVDVIAGPDSYKDLPRLLAISR 211
Query: 110 RFFIDD-----NLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFE 164
+ +L+ + D V AF+ I GCD C YCI+P RGR RS
Sbjct: 212 HYGNSAINVLLSLDETYADVMPVRLNSESPTAFVSIMRGCDNMCTYCIVPFTRGRERSRP 271
Query: 165 ERKILEQVGLLCSKGVQEVVLTGTNVGSY-------------------------GKDRGS 199
I+ +V L +GV+EV L G NV SY K G+
Sbjct: 272 LASIVAEVKALAEQGVKEVTLLGQNVNSYRDRTAQEEQDSLKATPVPGFSTVYKPKTGGT 331
Query: 200 NIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELL-EEDFLEKHLHIALQHSHDLMLER 258
A L++ ++Q RIR S P +DE LE++ + + K LH+ Q + +LER
Sbjct: 332 PFAALLRSVAQAVPDMRIRFTSPHPKDFSDEVLEVIRDHPNVCKQLHLPAQSGNTQVLER 391
Query: 259 MNRRNRTKSDRELLETIAS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPF 316
M R ++ EL++ I N + +DFI G GE+ F+ ++ + + F
Sbjct: 392 MRRGYSREAYLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQVQYNVAYLF 451
Query: 317 IYSKR-KDTPSSLMTDSVSLEDSKKRL 342
YS R K T D V + +RL
Sbjct: 452 AYSMREKTTAHRRYKDDVPINVKNERL 478
>ref|NP_485355.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB73269.1| (AP003585) ORF_ID:alr1312~hypothetical protein [Nostoc sp. PCC
7120]
Length = 454
Score = 133 bits (335), Expect = 3e-30
Identities = 101/402 (25%), Positives = 189/402 (46%), Gaps = 39/402 (9%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
++ + TFGC+ N D++ M+ L+D F + + AD+I+ N+CT+ + A+ V SY
Sbjct: 6 RRYHITTFGCQMNKADSERMAGILEDMGFKFSEDPNNADLILYNTCTIRDNAEQKVYSYL 65
Query: 60 KKMARLDKE-----VLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQE------ 107
+ A+ E ++ GC + +G+ L + L V G + ++ LL+
Sbjct: 66 GRQAKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQ 125
Query: 108 ---KKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFE 164
+ I +++ D+T+ A++ + GC+ C YC++P+VRG +S
Sbjct: 126 VVATEAVHIMEDITQARRDSTVT--------AWVNVIYGCNERCTYCVVPNVRGVEQSRT 177
Query: 165 ERKILEQVGLLCSKGVQEVVLTGTNVGSYGKD------RGSNI---ARLIKKLSQIAGLK 215
+ ++ L +G +E+ L G N+ +YG+D G ++ L+ + + G++
Sbjct: 178 PAAVRAEMEELGRQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVPGVE 237
Query: 216 RIRIGSLEPNQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLET 274
RIR + P + ++ E + +H HI Q + +L+ M R + R +++T
Sbjct: 238 RIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNQLLKAMARGYTQEKYRRIIDT 297
Query: 275 IA--SKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDS 332
I + +I D IVG PGE+ FE K ++ + ++ YS R TP++L +
Sbjct: 298 IRRYMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWENQ 357
Query: 333 VSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVEVQ 374
+S E RL + L+ KA + Q + + LVE Q
Sbjct: 358 LSEEVKSDRLQRLNHLV--NVKAAERSQRYMGRIEEVLVEEQ 397
>ref|NP_601156.1| (NC_003450) COG0621:2-methylthioadenine synthetase [Corynebacterium
glutamicum]
Length = 526
Score = 132 bits (333), Expect = 6e-30
Identities = 105/395 (26%), Positives = 189/395 (47%), Gaps = 38/395 (9%)
Query: 7 KTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAV-------RS 57
KT+GC+ N+ D++ +S L++ + E+ D+++ N+C V AD + RS
Sbjct: 33 KTYGCQMNVHDSERLSGLLEEAGYVAAPEDTTPDLVVFNTCAVRENADMRLYGTLGNLRS 92
Query: 58 YAKKMARLDKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQEKKR-----F 111
+K + ++ GC + + +K ++ VFG N + LLQ +
Sbjct: 93 VKEKNPGM--QIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIGSLPTLLQRAEHNAQAEV 150
Query: 112 FIDDNLEN--KHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKIL 169
I D+LE L S + G ++ + GC+ C +CI+PS+RG+ + IL
Sbjct: 151 EIVDSLEQFPSVLSAKRESAYAG----WVSVSVGCNNTCTFCIVPSLRGKEQDRRPGDIL 206
Query: 170 EQVGLLCSKGVQEVVLTGTNVGSYG---------KDRGSNIARLIKKLSQIAGLKRIRIG 220
+V L +GV EV L G NV +YG +DR S ++L++ +I GL+R+R
Sbjct: 207 AEVQALVDQGVTEVTLLGQNVNAYGVNFVDPELERDR-SAFSKLLRACGEIEGLERVRFT 265
Query: 221 SLEPNQINDEFLE-LLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK- 278
S P + + ++ + E + LH+ LQ D +L+ M R R+K +L+ + +K
Sbjct: 266 SPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKVLKEMRRSYRSKKFLSILDEVRAKI 325
Query: 279 -NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLED 337
+ +I TD IVG PGE+ F+ ++ T + F YS R TP++ + + E
Sbjct: 326 PHASITTDIIVGFPGETEEDFQATLDVVKKARFTSAYTFQYSPRPGTPAAEYENQLPKEV 385
Query: 338 SKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
++R + ++ + + Q + T ++ LV+
Sbjct: 386 VQERYERL--MVVQEQVCEEENQKLIGTTVELLVQ 418
>dbj|BAB99342.1| (AP005280) 2-methylthioadenine synthetase [Corynebacterium
glutamicum ATCC 13032]
Length = 522
Score = 132 bits (333), Expect = 6e-30
Identities = 105/395 (26%), Positives = 189/395 (47%), Gaps = 38/395 (9%)
Query: 7 KTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAV-------RS 57
KT+GC+ N+ D++ +S L++ + E+ D+++ N+C V AD + RS
Sbjct: 29 KTYGCQMNVHDSERLSGLLEEAGYVAAPEDTTPDLVVFNTCAVRENADMRLYGTLGNLRS 88
Query: 58 YAKKMARLDKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQEKKR-----F 111
+K + ++ GC + + +K ++ VFG N + LLQ +
Sbjct: 89 VKEKNPGM--QIAVGGCLAQKDKDTVVKKAPWVDVVFGTHNIGSLPTLLQRAEHNAQAEV 146
Query: 112 FIDDNLEN--KHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKIL 169
I D+LE L S + G ++ + GC+ C +CI+PS+RG+ + IL
Sbjct: 147 EIVDSLEQFPSVLSAKRESAYAG----WVSVSVGCNNTCTFCIVPSLRGKEQDRRPGDIL 202
Query: 170 EQVGLLCSKGVQEVVLTGTNVGSYG---------KDRGSNIARLIKKLSQIAGLKRIRIG 220
+V L +GV EV L G NV +YG +DR S ++L++ +I GL+R+R
Sbjct: 203 AEVQALVDQGVTEVTLLGQNVNAYGVNFVDPELERDR-SAFSKLLRACGEIEGLERVRFT 261
Query: 221 SLEPNQINDEFLE-LLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK- 278
S P + + ++ + E + LH+ LQ D +L+ M R R+K +L+ + +K
Sbjct: 262 SPHPAEFTSDVIDAMAETPNICPQLHMPLQSGSDKVLKEMRRSYRSKKFLSILDEVRAKI 321
Query: 279 -NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLED 337
+ +I TD IVG PGE+ F+ ++ T + F YS R TP++ + + E
Sbjct: 322 PHASITTDIIVGFPGETEEDFQATLDVVKKARFTSAYTFQYSPRPGTPAAEYENQLPKEV 381
Query: 338 SKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
++R + ++ + + Q + T ++ LV+
Sbjct: 382 VQERYERL--MVVQEQVCEEENQKLIGTTVELLVQ 414
>ref|NP_440473.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|P73127|Y996_SYNY3 Hypothetical protein sll0996
pir||S75239 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA17153.1| (D90904) ORF_ID:sll0996~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 451
Score = 131 bits (329), Expect = 2e-29
Identities = 97/392 (24%), Positives = 186/392 (46%), Gaps = 23/392 (5%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQ--EADIIIINSCTVTNGADSAVRSYA 59
++ + TFGC+ N D++ M+ L++ T + +AD+++ N+C++ + A+ V SY
Sbjct: 6 RRYHIITFGCQMNKADSERMAGILENLGMTYTDDPNQADLVLYNTCSIRDNAEQKVYSYL 65
Query: 60 KKMARLDK-----EVLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQEKKRFFI 113
+ A+ + ++ GC + +G++L + L V G + +++ LL++
Sbjct: 66 GRQAKRKQVEPELTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVWAGSQ 125
Query: 114 DDNLENKHLDTTMVSEFVGKT-RAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQV 172
E+ H+ + T A++ I GC+ C+YC++P+VRG +S I ++
Sbjct: 126 VVATESLHIMEDITKPRRESTVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYGEM 185
Query: 173 GLLCSKGVQEVVLTGTNVGSYGKDRGS---------NIARLIKKLSQIAGLKRIRIGSLE 223
+L +G +EV L G N+ +YG+D + L+ + I G+ R+R +
Sbjct: 186 EVLAQQGFKEVTLLGQNIDAYGRDLPGTTPSGRHLHTLTDLLYHVHDIEGIDRLRFATSH 245
Query: 224 PNQINDEFLELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIA--SKNF 280
P + ++ +E + +H HI Q + +L+ M R + +++E I +
Sbjct: 246 PRYFTERLIQACQELPKVCEHFHIPFQSGDNDILKAMKRGYTREKYLQIIEKIRRYMPDA 305
Query: 281 AIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKK 340
AI D IVG PGE+ + FE +E + ++ YS R TP++ + +S E
Sbjct: 306 AISADVIVGFPGETEAQFENTLNLIEEVGFDLLNTAAYSPRPGTPAAFWDNQLSEEVKGD 365
Query: 341 RLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
RL + L+ +A + Q L + LVE
Sbjct: 366 RLQRLNHLV--STQAMERSQRYLGRVEEVLVE 395
>ref|NP_294874.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||H75431 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10722.1|AE001964_6 (AE001964) conserved hypothetical protein [Deinococcus radiodurans]
Length = 505
Score = 130 bits (326), Expect = 4e-29
Identities = 106/372 (28%), Positives = 173/372 (46%), Gaps = 25/372 (6%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQ--EADIIIINSCTVTNGADSAVRSYA- 59
K + T+GC+ N +DT ++ L F + E EAD +++N+C V VRS
Sbjct: 48 KAHLITYGCQMNEYDTHLVQSQLVSFGADIVESPDEADFVLVNTCAVRGKPVDKVRSLLG 107
Query: 60 ---KKMARLDKEVLFTGCGVKTQ-GKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDD 115
K+ A+ V GC + + G+++ K + + G + I A L+ +RF+
Sbjct: 108 DLRKQKAQRSLVVGMMGCLAQLEEGQQIARKFEVDVLLGPGSLLDIGAALESNERFW--- 164
Query: 116 NLENK-HLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGL 174
L+ K L + GK +A + I GCD C YCI+P+ RG S IL ++ +
Sbjct: 165 GLQFKDELHDHIPPPPSGKLQAHLTIMRGCDHHCTYCIVPTTRGPQVSRHPDDILRELDM 224
Query: 175 LCSKGVQEVVLTGTNVGSYGKDRGSNI------ARLIKKLSQIAGLKRIRIGSLEP-NQI 227
+ GV+EV L G NV +YG D+G+ + A L++ + +G++R++ + P N
Sbjct: 225 QLAAGVREVTLLGQNVNAYGVDQGAKLKGYPSFADLLRMVG-ASGIERVKFTTSHPMNFT 283
Query: 228 NDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRR-NRTKSDRELLETIAS-KNFAIGTD 285
D + E + + +H+ +Q D +L RM R NR K + + + + TD
Sbjct: 284 EDVAAAIGETPAICEFVHLPVQSGSDRVLRRMAREYNREKYLTHIAQIKKHIPDVVLATD 343
Query: 286 FIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAI 345
IVG PGE+ F+ + + + FIYS R TPS + E +RL +
Sbjct: 344 IIVGFPGETEEDFQDTLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLPRELKTERLQRL 403
Query: 346 ----KDLIFHKN 353
KD KN
Sbjct: 404 IARQKDWSARKN 415
>ref|NP_337308.1| (NC_002755) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
gb|AAK47122.1| (AE007108) conserved hypothetical protein [Mycobacterium
tuberculosis CDC1551]
Length = 512
Score = 129 bits (324), Expect = 6e-29
Identities = 102/371 (27%), Positives = 176/371 (46%), Gaps = 31/371 (8%)
Query: 7 KTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAVRSYA----- 59
+T+GC+ N+ D++ ++ L+ + + EAD+++ N+C V AD+ +
Sbjct: 30 RTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLYGNLSHLAP 89
Query: 60 KKMARLDKEVLFTGC-GVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKK-----RFFI 113
+K A D ++ GC K + L ++ VFG N + LL+ + + I
Sbjct: 90 RKRANPDMQIAVGGCLAQKDRDAVLXRAPWVDVVFGTHNIGSLPTLLERARHNKVAQVEI 149
Query: 114 DDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
+ L+ +++ S A++ I GC+ C +CI+PS+RGR IL +V
Sbjct: 150 AEALQQ--FPSSLPSSRESAYAAWVSISVGCNNSCTFCIVPSLRGREVDRSPADILAEVR 207
Query: 174 LLCSKGVQEVVLTGTNVGSYG---------KDRGSNIARLIKKLSQIAGLKRIRIGSLEP 224
L + GV EV L G NV +YG ++RG+ A L++ I GL+R+R S P
Sbjct: 208 SLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGA-FAELLRACGDIDGLERVRFTSPHP 266
Query: 225 NQINDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFA 281
+ D+ +E + + + LH+ LQ D +L M R R + ++E + A + A
Sbjct: 267 AEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYLGIIERVRAAIPHAA 326
Query: 282 IGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVS---LEDS 338
I TD IVG PGE+ F + F YSKR TP++ + + +++
Sbjct: 327 ITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAQLDGQLPKAVVQER 386
Query: 339 KKRLNAIKDLI 349
+RL A+++ I
Sbjct: 387 YERLIALQEQI 397
>ref|NP_217249.1| (NC_000962) hypothetical protein Rv2733c [Mycobacterium
tuberculosis H37Rv]
sp|O33238|YR33_MYCTU Hypothetical protein Rv2733c
pir||D70506 hypothetical protein Rv2733c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB10909.1| (Z98209) hypothetical protein Rv2733c [Mycobacterium tuberculosis
H37Rv]
Length = 512
Score = 128 bits (322), Expect = 1e-28
Identities = 102/371 (27%), Positives = 176/371 (46%), Gaps = 31/371 (8%)
Query: 7 KTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAVRSYA----- 59
+T+GC+ N+ D++ ++ L+ + + EAD+++ N+C V AD+ +
Sbjct: 30 RTYGCQMNVHDSERLAGLLEAAGYRRATDGSEADVVVFNTCAVRENADNRLYGNLSHLAP 89
Query: 60 KKMARLDKEVLFTGC-GVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKK-----RFFI 113
+K A D ++ GC K + L ++ VFG N + LL+ + + I
Sbjct: 90 RKRANPDMQIAVGGCLAQKDRDAVLRRAPWVDVVFGTHNIGSLPTLLERARHNKVAQVEI 149
Query: 114 DDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
+ L+ +++ S A++ I GC+ C +CI+PS+RGR IL +V
Sbjct: 150 AEALQQ--FPSSLPSSRESAYAAWVSISVGCNNSCTFCIVPSLRGREVDRSPADILAEVR 207
Query: 174 LLCSKGVQEVVLTGTNVGSYG---------KDRGSNIARLIKKLSQIAGLKRIRIGSLEP 224
L + GV EV L G NV +YG ++RG+ A L++ I GL+R+R S P
Sbjct: 208 SLVNDGVLEVTLLGQNVNAYGVSFADPALPRNRGA-FAELLRACGDIDGLERVRFTSPHP 266
Query: 225 NQINDEFLELLEED-FLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFA 281
+ D+ +E + + + LH+ LQ D +L M R R + ++E + A + A
Sbjct: 267 AEFTDDVIEAMAQTRNVCPALHMPLQSGSDRILRAMRRSYRAERYLGIIERVRAAIPHAA 326
Query: 282 IGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVS---LEDS 338
I TD IVG PGE+ F + F YSKR TP++ + + +++
Sbjct: 327 ITTDLIVGFPGETEEDFAATLDVVRRARFAAAFTFQYSKRPGTPAAQLDGQLPKAVVQER 386
Query: 339 KKRLNAIKDLI 349
+RL A+++ I
Sbjct: 387 YERLIALQEQI 397
>ref|NP_143704.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||F71200 hypothetical protein PH1875 - Pyrococcus horikoshii
Length = 432
Score = 128 bits (322), Expect = 1e-28
Identities = 89/334 (26%), Positives = 165/334 (48%), Gaps = 11/334 (3%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEE--QEADIIIINSCTVTNGADSAVRSY 58
M KVY + +GC N D ++M+ L + E +E++I+++NSC V + + +
Sbjct: 8 MVKVYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARR 67
Query: 59 AKKMARLDKEVLFTGCGVKTQGKELFEK-GFLKGVFGHDN-KEKINALLQEKKRFFIDDN 116
+++ K+V+ TGC + E+ + GV D + + ++ +K + D
Sbjct: 68 IRELLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPD- 126
Query: 117 LENKHLDTTMVSEFVGKTRAFI-KIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLL 175
+ ++LD + FI I EGC C YC RG +S+ KI+ V
Sbjct: 127 WKKRNLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWA 186
Query: 176 CSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQI---NDEFL 232
+G +E+ L+ + G YG D G+N+A+LI +++ I G RIR+G + PN + DE +
Sbjct: 187 IKQGYKEIWLSAEDTGCYGFDIGTNLAKLIDEITAIEGEFRIRVGMMNPNHVLKFLDELI 246
Query: 233 ELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIVGH 290
+ +++ + K LH+ +Q + +L +M R + E+++ + + TD IVG
Sbjct: 247 DAYKDEKVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGF 306
Query: 291 PGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDT 324
PGES F+++ + ++ + ++ YS R T
Sbjct: 307 PGESEEAFQRSVELIKRIRPDKVNVSRYSPRPGT 340
>sp|O59545|YI75_PYRHO Hypothetical protein PH1875
Length = 425
Score = 128 bits (322), Expect = 1e-28
Identities = 89/334 (26%), Positives = 165/334 (48%), Gaps = 11/334 (3%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEE--QEADIIIINSCTVTNGADSAVRSY 58
M KVY + +GC N D ++M+ L + E +E++I+++NSC V + + +
Sbjct: 1 MVKVYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARR 60
Query: 59 AKKMARLDKEVLFTGCGVKTQGKELFEK-GFLKGVFGHDN-KEKINALLQEKKRFFIDDN 116
+++ K+V+ TGC + E+ + GV D + + ++ +K + D
Sbjct: 61 IRELLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPD- 119
Query: 117 LENKHLDTTMVSEFVGKTRAFI-KIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLL 175
+ ++LD + FI I EGC C YC RG +S+ KI+ V
Sbjct: 120 WKKRNLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWA 179
Query: 176 CSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQI---NDEFL 232
+G +E+ L+ + G YG D G+N+A+LI +++ I G RIR+G + PN + DE +
Sbjct: 180 IKQGYKEIWLSAEDTGCYGFDIGTNLAKLIDEITAIEGEFRIRVGMMNPNHVLKFLDELI 239
Query: 233 ELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIVGH 290
+ +++ + K LH+ +Q + +L +M R + E+++ + + TD IVG
Sbjct: 240 DAYKDEKVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGF 299
Query: 291 PGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDT 324
PGES F+++ + ++ + ++ YS R T
Sbjct: 300 PGESEEAFQRSVELIKRIRPDKVNVSRYSPRPGT 333
>ref|NP_111857.1| (NC_002689) 2-methylthioadenine synthetase [Thermoplasma volcanium]
dbj|BAB60504.1| (AP000996) hypothetical protein [Thermoplasma volcanium]
Length = 401
Score = 128 bits (321), Expect = 1e-28
Identities = 105/416 (25%), Positives = 190/416 (45%), Gaps = 44/416 (10%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKDFSTTL--EEQEADIIIINSCTVTNGADSAVRSYAK 60
K+YF+ +GC N +T + L + TL +EAD+ II +C V + + + +
Sbjct: 2 KIYFEAYGCTLNQGETALYVNKLLNEGNTLVSNPKEADLSIIGTCAVIKKTEDHMMARIQ 61
Query: 61 KMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENK 120
++R K V GC +GK + E + ++ + +++ R F + E
Sbjct: 62 NLSRFGK-VEVIGCLAPVKGKTMVE-------------DNVSVIEKDRFRSFQEVIDEVS 107
Query: 121 HLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGV 180
++ +VS I I +GC CN+C+ RG+ S + KI Q+ +L +G+
Sbjct: 108 PVNAEIVSG--------IPINQGCTGKCNFCVSHIARGKLVSRKPEKIAGQIKILLQRGI 159
Query: 181 QEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPN---QINDEFLELLEE 237
+E+ +T + +YGKD G + LI+ +++I R+R+G +EP +I D+ +
Sbjct: 160 KEIKITSLDTAAYGKDIGLRLPHLIRTITEIGDDFRLRVGMMEPKNTLEIVDDLISAYRS 219
Query: 238 DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFAIGTDFIVGHPGESG 295
+ + K LH+ +Q D +LE MNR + A + + TD I+G+ E+
Sbjct: 220 EKVFKFLHLPVQSGDDYVLEVMNREYTVSDFIRITGKFREAFPDSTLSTDLIIGYYAEND 279
Query: 296 SVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKD---LIFHK 352
FEK + +E I P I + K +P L D E K N +K+ +I
Sbjct: 280 DSFEKTVQLIEK-----IRPEIINVTKFSPRELTAD---FEKRPKPTNILKEQDRMIADM 331
Query: 353 NKAFRQLQLKLNTPLKALVEVQKDGEFKAL---DQFFNPIKIKSDKPLRASFLEIK 405
+K Q + V + ++G+ +++ D + PI I DK + F +++
Sbjct: 332 HKEILQEKFSNLIGKTEFVLITENGKGRSMIGRDHAYRPIVI-MDKTRKFEFHQVE 386
>ref|NP_616094.1| (NC_003552) 2-methylthioadenine synthase [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04574.1| (AE010782) 2-methylthioadenine synthase [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
Length = 435
Score = 126 bits (316), Expect = 5e-28
Identities = 86/340 (25%), Positives = 164/340 (47%), Gaps = 18/340 (5%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQ----EADIIIINSCTVTNGADSAVRSY 58
KVY ++FGC +L ++M +++ L EA++ I NSCTV + +
Sbjct: 2 KVYLESFGCSASLASAEIMKASVERLGHELLNPAAAGEAEVYICNSCTVKYTTEQKILYK 61
Query: 59 AKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLE 118
+ M +V+ +GC + Q +E+ + G + ++ LL ++ ++
Sbjct: 62 IRSMGEKGVQVIVSGCMPEVQLEEILHANPEAHILGVNAISRLGELLSSIEQRRMEGLPA 121
Query: 119 NKHLD--TTMVSEFVGKTRA-------FIKIQEGCDFDCNYCIIPSVRGRARSFEERKIL 169
HL+ T+ F+ R +I +GC+F C+YCI+ RG+ RSF KI+
Sbjct: 122 GGHLELRTSEPLGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLRSFPPEKIV 181
Query: 170 EQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQ--- 226
+ + + G +E+ LT + YG D G + L++ +S+I G ++R+G + P
Sbjct: 182 KDIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLRMISEIPGDFKVRVGMMNPFSVLP 241
Query: 227 INDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGT 284
I D ++ + D + K LH+ +Q + +L++MNR ++ + E++ ++ + ++ T
Sbjct: 242 ILDGLVDAFDSDKVFKLLHLPIQSASHSVLKKMNRLHKMDAVDEIITKFRARFEDLSLFT 301
Query: 285 DFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDT 324
D IVG E+ FE+ + ++ I+ YS R T
Sbjct: 302 DIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHT 341
>ref|NP_275963.1| (NC_000916) conserved protein [Methanothermobacter
thermautotrophicus] [Methanothermobacter
thermautotrophicus str. Delta H]
sp|O26914|Y826_METTH Hypothetical protein MTH826
pir||B69210 conserved hypothetical protein MTH826 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85324.1| (AE000860) conserved protein [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 424
Score = 126 bits (316), Expect = 5e-28
Identities = 100/360 (27%), Positives = 170/360 (46%), Gaps = 20/360 (5%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKDFSTTLEE-QEADIIIINSCTVTNGADSAVRSYAKK 61
+VY +TFGC N D+++M+ L++ L +AD+IIIN+C V + + V + KK
Sbjct: 5 RVYIETFGCTFNQADSEIMAGVLREEGAVLTGIDDADVIIINTCYVKHPTEHKVINRIKK 64
Query: 62 MARL--DKEVLFTGCGVKTQGKELFE-KGFLKGVFGHDNKEKINALLQEKKRFFIDDNLE 118
+ +K ++ GC V+ +L G + H + A+ R + +E
Sbjct: 65 IQETYPEKGLVVAGCMVEIDPSKLEAISGDASWLGPHQLRRAPQAV-----RAASNGLVE 119
Query: 119 NKHLDTTMVSEFVGKTRA-----FIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
T+ V V + R+ I I EGC+ C+YC RGR +S+ I+ +
Sbjct: 120 RITGFTSDVKVKVPRVRSNPLIHIIPICEGCNGSCSYCCTRFARGRIQSYPSDLIISEAR 179
Query: 174 LLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQI---NDE 230
+ G +E+ LT + +YG D G ++ +IK +S I G RIR+G + P + D
Sbjct: 180 EAVASGCREIQLTAQDTAAYGVDTGEKLSDIIKGISGIPGNFRIRVGMMHPASVLRDLDG 239
Query: 231 FLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIV 288
+E + + + LH+ +Q D +L M R + R ++E S+ + +I TD IV
Sbjct: 240 LVEAFKSEKVYSFLHLPVQSGSDSVLADMERGHTVDEFRMIVERFRSEIPDISIATDIIV 299
Query: 289 GHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDL 348
G+P E F LE + + IH Y R SS + D + + ++R A+++L
Sbjct: 300 GYPTEEREDFMDTCSLLEEVKPSFIHLSKYRHRPRARSSSL-DEIDFRELRRRSRALEEL 358
>ref|NP_070075.1| (NC_000917) conserved hypothetical protein [Archaeoglobus fulgidus]
sp|O29021|YC47_ARCFU Hypothetical protein AF1247
pir||F69405 conserved hypothetical protein AF1247 - Archaeoglobus fulgidus
gb|AAB89997.1| (AE001018) conserved hypothetical protein [Archaeoglobus fulgidus]
Length = 405
Score = 125 bits (313), Expect = 1e-27
Identities = 94/346 (27%), Positives = 166/346 (47%), Gaps = 25/346 (7%)
Query: 35 QEADIIIINSCTVTNGADSAVRSYAKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFG 94
++A+++IINSC V + + + + R K+V+ GC + + L
Sbjct: 15 EDAEVVIINSCGVIDFTERKIIRRMLDLKREGKKVVLAGCLTRISKEAL---SVADSALS 71
Query: 95 HDNKEKI-----NALLQEK---KRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDF 146
DN + + +AL K +R FID E HL + + A + I EGC
Sbjct: 72 PDNLDMVVDAVYSALNGRKLFTERRFID-KAEFSHLKCRLRENAI----AIVSISEGCLG 126
Query: 147 DCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRG-SNIARLI 205
C++C RGR RSF I+ + G +E+ LT + G+YG D+G + + L+
Sbjct: 127 KCSFCATKFARGRLRSFSMDAIVREAERAVRAGYREIQLTSQDTGAYGMDKGRAMLPELL 186
Query: 206 KKLSQIAGLKRIRIGSLEPN---QINDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRR 262
+K+S+I G R+R+G + P ++ DE + + + K LHI +Q + +LE M R
Sbjct: 187 RKISEIEGEFRVRVGMMNPQHAVRMLDELINAYSSEKIYKFLHIPVQSGDNRILEDMKRN 246
Query: 263 NRTKSDRELLETIASK--NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSK 320
+ + E++E + + I TD IVG P E+ F K+++ ++ ++ YS
Sbjct: 247 HTVEDYVEVVEAFRNSFDDVLISTDIIVGFPTETEEAFWKSYELIKETRPDIVNITRYSA 306
Query: 321 RKDTPSSLMTDS---VSLEDSKKRLNAIKDLIFHKNKAFRQLQLKL 363
RK TP++ + D + E S+K + ++ + NK F +L++
Sbjct: 307 RKGTPAARLRDIPGWIKKERSRKLTDLMRKIGLENNKRFVGKKLRV 352
>ref|NP_614364.1| (NC_003551) 2-methylthioadenine synthetase [Methanopyrus kandleri
AV19]
gb|AAM02294.1| (AE010397) 2-methylthioadenine synthetase [Methanopyrus kandleri
AV19]
Length = 423
Score = 124 bits (311), Expect = 2e-27
Identities = 98/361 (27%), Positives = 166/361 (45%), Gaps = 22/361 (6%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
M KV + +GC N D +++ E L+ F + + AD+ ++ +C V + D+ + +
Sbjct: 1 MTKVAVEVYGCAANHDDGRLVRELLRREGFEVVEDAENADVAVLLTCIVRDSVDARMVNR 60
Query: 59 AKKMARLDKEVLFTGC---GVKTQGKELFEKGFLKGVFGHDN-KEKINALLQEKKRFFID 114
+++ R+ V GC + ++L L G D E + A+L+ + F+
Sbjct: 61 MRELERVPTVV--AGCFPEAYPERARKLRPDAALVGPRHLDRIPEAVRAVLRGDRVEFLG 118
Query: 115 DNLENKHLDTTM-VSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
E + +D + A + I EGC C YC + RG RSF +IL +V
Sbjct: 119 ---EREDIDWKADAPRELPNLAAIVPIAEGCPNRCAYCAVKLARGNLRSFPPERILRRVK 175
Query: 174 LLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGL--KRIRIGSLEPNQ---IN 228
+G E+ LT + +YG DRG+N+ L++ + + R+R+G P I+
Sbjct: 176 RELERGAVEIHLTAQDTATYGLDRGTNVVELLEDVVDLCSRYGARVRLGMFNPGHAYPIS 235
Query: 229 DEFLELL--EEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGT 284
D+ +L +D L + +H+ +Q D +L RMNR + E+ + F+ T
Sbjct: 236 DDLADLFASRDDVLYRSIHMPVQSGDDEVLRRMNRNYTVEEALEVYRAFERRLGYFSFIT 295
Query: 285 DFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNA 344
D IVG PGE+ F + LE +H + +R TP++ M D V ED K R +
Sbjct: 296 DVIVGFPGETEEAFRNTLRFLERTRPHILHASRFCRRPGTPAARMEDQVP-EDVKLRRSR 354
Query: 345 I 345
I
Sbjct: 355 I 355
>ref|NP_485265.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB73179.1| (AP003585) ORF_ID:alr1222~hypothetical protein [Nostoc sp. PCC
7120]
Length = 440
Score = 124 bits (310), Expect = 3e-27
Identities = 100/386 (25%), Positives = 191/386 (48%), Gaps = 37/386 (9%)
Query: 10 GCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGA-DSAVRSYAKKMARLD 66
GC N DT+ M L + E+ AD +I+N+C+ A + +VR+ + +A +
Sbjct: 13 GCEKNRIDTEHMLGLLVKAGYGVDTNEELADYVIVNTCSFIESAREESVRTLVE-LAEAN 71
Query: 67 KEVLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQEKKR-----------FFID 114
K+++ TGC + +L E+ V G + KI ++++ ++ +I
Sbjct: 72 KKIVITGCMAQHFQTQLLEELPEAVAVVGTGDYHKIVSVIERAEQGERVTLVSAEPTYIA 131
Query: 115 DNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGL 174
D ++ TT + A++++ EGCD+ C +CIIP +RG RS I+ +
Sbjct: 132 DETTPRYRTTT-------EGVAYLRVAEGCDYRCAFCIIPHLRGNQRSRTIESIVAEAEQ 184
Query: 175 LCSKGVQEVVLTGTNVGSYGKD--RGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFL 232
L ++GVQE++L +YG D +A L++ L +I + IR+ P + + +
Sbjct: 185 LVAQGVQEIILISQITTNYGLDIYGKPKLAELLRALGKI-NVPWIRMHYAYPTGLTPDVI 243
Query: 233 ELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLE--TIASKNFAIGTDFIVG 289
++E + +L + LQHSH +L MNR + + + E++E IA + T FIVG
Sbjct: 244 AAIQETPNVLPYLDLPLQHSHSEVLRSMNRPWQGRVNDEIIERLKIAIPGAVLRTTFIVG 303
Query: 290 HPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVS---LEDSKKRLNAIK 346
PGE+ + FE + ++ H+ F +S + TP+ + + + +++ + RL A++
Sbjct: 304 FPGETEAQFEHLLQFVQRHEFDHVGVFTFSAEEGTPAYKLPNQLPQEVMDERRDRLMALQ 363
Query: 347 DLIFHKNKAFRQLQLKLNTPLKALVE 372
I ++R+ Q ++ ++ L+E
Sbjct: 364 QPI-----SWRKNQQEVGKTVEVLIE 384
>gb|AAL03926.1|U30252_14 (U30252) unknown [Synechococcus sp. PCC 7942]
Length = 452
Score = 124 bits (310), Expect = 3e-27
Identities = 98/364 (26%), Positives = 176/364 (47%), Gaps = 33/364 (9%)
Query: 4 VYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEA--DIIIINSCTVTNGA-DSAVRSYAK 60
+ F GC N DT+ M L + ++ EA D++++N+C+ A + +VR+ +
Sbjct: 7 IAFSHLGCEKNRIDTEHMIGLLAEAGYGIDANEALADVVVVNTCSFIQAAREESVRTLVE 66
Query: 61 KMARLDKEVLFTGCGVKTQGKELF----EKGFLKGVFGH----------DNKEKINALLQ 106
+A K+++ GC + +L E L G + ++ E++NA+ Q
Sbjct: 67 -LAESGKKIVIAGCLAQHFQDQLLAELPEAIALVGTGDYHRIVDVLQRTESGERVNAISQ 125
Query: 107 EKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEER 166
E F D+NL T+ V A++++ EGCD+ C +CIIP +RG+ RS
Sbjct: 126 EPS-FIADENLPRYRTTTSAV--------AYLRVAEGCDYRCAFCIIPHLRGKQRSRSIE 176
Query: 167 KILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSN--IARLIKKLSQIAGLKRIRIGSLEP 224
I+ + L ++GVQE+VL +YG DR +A L+++L Q+ + IRI P
Sbjct: 177 SIVAEAKQLAAEGVQELVLISQITTNYGLDRYGKPMLAELLRQLGQV-DVPWIRIHYAYP 235
Query: 225 NQINDEFLELLEEDF-LEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFA 281
+ E + + E + +L + LQHSH +L+ MNR + + ++E + A +
Sbjct: 236 TGLTPEVIAAIRETHNVLPYLDLPLQHSHPEILKAMNRPWQGNVNDRIIEKLKEALPDAV 295
Query: 282 IGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKR 341
+ T FI G PGE+ F + ++ H+ F +S + T + + + V + + R
Sbjct: 296 LRTTFIAGFPGETEEHFRHLQQFIQRHEFDHVGVFAFSPEEGTAAIDLPNPVPDDVKEAR 355
Query: 342 LNAI 345
+A+
Sbjct: 356 RDAL 359
>ref|NP_634206.1| (NC_003901) hypothetical protein [Methanosarcina mazei Goe1]
gb|AAM31878.1| (AE013458) hypothetical protein [Methanosarcina mazei Goe1]
Length = 435
Score = 123 bits (309), Expect = 4e-27
Identities = 85/341 (24%), Positives = 163/341 (46%), Gaps = 20/341 (5%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQE----ADIIIINSCTVTNGADSAVRSY 58
KVY ++FGC + ++M ++ L E A++ I NSCTV + +
Sbjct: 2 KVYLESFGCSASQASAEIMKASIGKLGHELLSPENAGQAEVYICNSCTVKYTTEQKILYK 61
Query: 59 AKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALL---QEKKRFFIDD 115
+ M +V+ +GC + Q +++ + G + ++ LL +++K+ I
Sbjct: 62 IRSMGEKGVQVIVSGCMPEVQLEDILHANPEAHILGVNAVSRLGDLLSTIEQRKKTGIPG 121
Query: 116 NLENKHLDTTMVSEFVGKTRA-------FIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
E + T+ F+ R +I +GC+F C+YCI+ RG+ SF +I
Sbjct: 122 G-ERLEIRTSEPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLLSFPPEEI 180
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQ-- 226
+E + + G +E+ LT + YG D G + L++ +S+I G ++R+G + P
Sbjct: 181 IEDIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLRAISEIPGDFKVRVGMMNPFSVL 240
Query: 227 -INDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIG 283
I D+ ++ + D + K LH+ +Q + +L++MNR ++ S E++ + ++ ++
Sbjct: 241 PILDDLVDAFDSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSVDEIITKFRAHFEDLSLF 300
Query: 284 TDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDT 324
TD IVG E+ FE+ + ++ I+ YS R T
Sbjct: 301 TDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHT 341
>ref|XP_165724.1| (XM_165724) hypothetical protein XP_165724 [Homo sapiens]
Length = 579
Score = 123 bits (308), Expect = 5e-27
Identities = 109/430 (25%), Positives = 196/430 (45%), Gaps = 33/430 (7%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQ--EADIIIINSCTVTNGADSAVRSY 58
++K++ +T+GC N D + M+ L + + E +AD+ ++NSCTV N A+ R+
Sbjct: 63 IQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNS 122
Query: 59 AKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFI----- 113
KK +K+++ GC + Q ++ + KG + G +++ +++E +
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGL--SIIGVQQIDRVVEVVEETIKGHSVRLLG 180
Query: 114 --DDN---LENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
DN L LD + + I I GC C YC RG S+ ++
Sbjct: 181 QKKDNGRRLGGARLDLPKIRK--NPLIEIISINTGCLNACTYCKTKHARGNLASYPIDEL 238
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQ-IAGLKRIRIGSLEPNQI 227
+++ +GV E+ LT + G+YG+D G+N+ L+ KL + I +R+G P I
Sbjct: 239 VDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYI 298
Query: 228 ---NDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAI 282
+E ++L + LHI +Q + D +L M R + +++ + K I
Sbjct: 299 LEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITI 358
Query: 283 GTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRL 342
TD I G PGE+ F++ K +E + + R TP++ M + V + K+R
Sbjct: 359 ATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQVKKQR- 416
Query: 343 NAIKDL--IFHKNKAFRQLQLKLNTPLKALV-EVQKDGEF-KALDQFFNPIKIKSDKPLR 398
KDL +FH ++ K+ + LV E D +F A +QF+ + + +
Sbjct: 417 --TKDLSRVFH---SYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFM 471
Query: 399 ASFLEIKEYE 408
+E+ YE
Sbjct: 472 GKMVEVDIYE 481
>ref|NP_060244.1| (NM_017774) hypothetical protein FLJ20342 [Homo sapiens]
dbj|BAA91102.1| (AK000349) unnamed protein product [Homo sapiens]
Length = 579
Score = 123 bits (308), Expect = 5e-27
Identities = 109/430 (25%), Positives = 196/430 (45%), Gaps = 33/430 (7%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQ--EADIIIINSCTVTNGADSAVRSY 58
++K++ +T+GC N D + M+ L + + E +AD+ ++NSCTV N A+ R+
Sbjct: 63 IQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNS 122
Query: 59 AKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFI----- 113
KK +K+++ GC + Q ++ + KG + G +++ +++E +
Sbjct: 123 IKKAQEENKKIVLAGCVPQAQPRQDYLKGL--SIIGVQQIDRVVEVVEETIKGHSVRLLG 180
Query: 114 --DDN---LENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
DN L LD + + I I GC C YC RG S+ ++
Sbjct: 181 QKKDNGRRLGGARLDLPKIRK--NPLIEIISISTGCLNACTYCKTKHARGNLASYPIDEL 238
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQ-IAGLKRIRIGSLEPNQI 227
+++ +GV E+ LT + G+YG+D G+N+ L+ KL + I +R+G P I
Sbjct: 239 VDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLVEVIPEGAMLRLGMTNPPYI 298
Query: 228 ---NDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAI 282
+E ++L + LHI +Q + D +L M R + +++ + K I
Sbjct: 299 LEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITI 358
Query: 283 GTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRL 342
TD I G PGE+ F++ K +E + + R TP++ M + V + K+R
Sbjct: 359 ATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKM-EQVPAQVKKQR- 416
Query: 343 NAIKDL--IFHKNKAFRQLQLKLNTPLKALV-EVQKDGEF-KALDQFFNPIKIKSDKPLR 398
KDL +FH ++ K+ + LV E D +F A +QF+ + + +
Sbjct: 417 --TKDLSRVFH---SYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFM 471
Query: 399 ASFLEIKEYE 408
+E+ YE
Sbjct: 472 GKMVEVDIYE 481
>emb|CAC15883.2| (AL355392) dJ1187J4.4 (CGI-05 protein (LOC51654) similar to rat
CDK5 activator-binding protein) [Homo sapiens]
Length = 548
Score = 122 bits (307), Expect = 6e-27
Identities = 108/418 (25%), Positives = 181/418 (42%), Gaps = 51/418 (12%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
+KVY +T+GC+ N+ DT++ L+ + T QEAD+I++ +C++ A+ + +
Sbjct: 61 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 120
Query: 60 KKM---------ARLDKEVLFTGCGVKTQGKELFEKGFLKGVF-GHDNKEKINALL---- 105
++ +R+ + GC + +E+ + + + G D + LL
Sbjct: 121 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 180
Query: 106 --QEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSF 163
Q+ + +L+ + D V T AF+ I GCD C+YCI+P RGR RS
Sbjct: 181 SGQQAANVLL--SLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSR 238
Query: 164 EERKILEQVGLLCSKGVQEVVLTGTNVGSY-------------------------GKDRG 198
ILE+V L +G++EV L G NV S+ K G
Sbjct: 239 PIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGG 298
Query: 199 SNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELL-EEDFLEKHLHIALQHSHDLMLE 257
A L+ ++S++ RIR S P DE L+L+ E D + K +H+ Q +LE
Sbjct: 299 LRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLE 358
Query: 258 RMNRRNRTKSDRELLETIASK--NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHP 315
M R ++ EL+ I ++ +DFI G GE+ + L +
Sbjct: 359 AMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFL 418
Query: 316 FIYSKRKDTPS-SLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
F YS R+ T + + D V E +RL + + + +A + Q + LVE
Sbjct: 419 FAYSMRQKTRAYHRLKDDVPEEVKLRRLEEL--ITIFREEATKANQTSVGCTQLVLVE 474
>ref|XP_015893.2| (XM_015893) similar to hypothetical protein HSPC167; hypothetical
protein; CGI-05 protein [Homo sapiens]
Length = 587
Score = 122 bits (307), Expect = 6e-27
Identities = 108/418 (25%), Positives = 181/418 (42%), Gaps = 51/418 (12%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
+KVY +T+GC+ N+ DT++ L+ + T QEAD+I++ +C++ A+ + +
Sbjct: 100 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 159
Query: 60 KKM---------ARLDKEVLFTGCGVKTQGKELFEKGFLKGVF-GHDNKEKINALL---- 105
++ +R+ + GC + +E+ + + + G D + LL
Sbjct: 160 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 219
Query: 106 --QEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSF 163
Q+ + +L+ + D V T AF+ I GCD C+YCI+P RGR RS
Sbjct: 220 SGQQAANVLL--SLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSR 277
Query: 164 EERKILEQVGLLCSKGVQEVVLTGTNVGSY-------------------------GKDRG 198
ILE+V L +G++EV L G NV S+ K G
Sbjct: 278 PIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGG 337
Query: 199 SNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELL-EEDFLEKHLHIALQHSHDLMLE 257
A L+ ++S++ RIR S P DE L+L+ E D + K +H+ Q +LE
Sbjct: 338 LRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLE 397
Query: 258 RMNRRNRTKSDRELLETIASK--NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHP 315
M R ++ EL+ I ++ +DFI G GE+ + L +
Sbjct: 398 AMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFL 457
Query: 316 FIYSKRKDTPS-SLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
F YS R+ T + + D V E +RL + + + +A + Q + LVE
Sbjct: 458 FAYSMRQKTRAYHRLKDDVPEEVKLRRLEEL--ITIFREEATKANQTSVGCTQLVLVE 513
>ref|NP_229658.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||G72201 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD36924.1|AE001823_6 (AE001823) conserved hypothetical protein [Thermotoga maritima]
Length = 430
Score = 122 bits (306), Expect = 8e-27
Identities = 98/390 (25%), Positives = 190/390 (48%), Gaps = 19/390 (4%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGAD----SAVR 56
+V K GC N D +V++ L++ + ++AD++++++C A +
Sbjct: 2 RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIF 61
Query: 57 SYAKKMARLDKEVLFTGCGVKTQGKELFEK--GFLKGVFGHDNKEKINALLQEKKRFFID 114
S+ + +++ GC V+ +EL ++ + + D +E NA+ E +
Sbjct: 62 SFVDAKDQYGYKLVVKGCLVQRYYEELKKEIPEVDQWIGVADPEEIANAI--ENGTDLVP 119
Query: 115 DNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGL 174
D E + + + + A++KI +GCD C +C IPS +G RS I +V
Sbjct: 120 DQPETVYRYRKRI-DLEERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVED 178
Query: 175 LCSKGVQEVVLTGTNVGSYGKD--RGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFL 232
L +G +E++L + SYG D R + L+++L+ + G IR+ L P+ + +E +
Sbjct: 179 LLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEII 238
Query: 233 E-LLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIVG 289
+LE D + K+ + +QH D +L+ M R ++ +++L +I + + + T IVG
Sbjct: 239 SAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVG 298
Query: 290 HPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLI 349
PGE+ FE+ + +E + + F+YS + T + + + V E +K+R + L+
Sbjct: 299 FPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEEL--LL 356
Query: 350 FHKNKAFRQLQLKLNTPLKALVEVQKDGEF 379
+ +L + LK LVE K+G+F
Sbjct: 357 LQAEISNSRLDRFVGKKLKFLVE-GKEGKF 385
>ref|NP_301734.1| (NC_002677) conserved hypothetical protein [Mycobacterium leprae]
sp|Q49842|YR33_MYCLE Hypothetical protein ML0989
emb|CAC31370.1| (AL583920) conserved hypothetical protein [Mycobacterium leprae]
Length = 517
Score = 122 bits (305), Expect = 1e-26
Identities = 95/347 (27%), Positives = 162/347 (46%), Gaps = 27/347 (7%)
Query: 7 KTFGCRTNLFDTQVMSENLK--DFSTTLEEQE---ADIIIINSCTVTNGADSAVRSYAKK 61
+T+GC+ N+ D++ ++ L+ + +E + AD+++ N+C V AD+ +
Sbjct: 23 RTYGCQMNVHDSERLAGLLEAAGYQRAADEADVGDADVVVFNTCAVRENADNRLYGNLSH 82
Query: 62 MA-----RLDKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALL---QEKKRFF 112
+A D ++ GC + + K ++ VFG N + LL + K
Sbjct: 83 LAPRKRNNPDMQIAVGGCLAQKDKHTVLSKAPWVDIVFGTHNLGSLPTLLDRARHNKVAQ 142
Query: 113 IDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQV 172
++ +H +++ S A++ I GC+ C +CI+PS+RG+ IL +V
Sbjct: 143 VEIVEALQHFPSSLPSARESDYAAWVSISVGCNNSCTFCIVPSLRGKEVDRSPADILAEV 202
Query: 173 GLLCSKGVQEVVLTGTNVGSYG---------KDRGSNIARLIKKLSQIAGLKRIRIGSLE 223
L + GV EV L G NV +YG ++RGS A L++ I GL+R+R S
Sbjct: 203 EALVADGVLEVTLLGQNVNAYGVSFADPALARNRGS-FAELLRSCGSIDGLERVRFTSPH 261
Query: 224 PNQINDEFLE-LLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNF 280
P + + +E + + + LH+ LQ D +L M R R + ++ + A +
Sbjct: 262 PAEFTYDVIEAMAQTPNVCPSLHMPLQSGSDRVLRAMRRSYRVERYLGIIGQVRAAMPHA 321
Query: 281 AIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSS 327
AI TD IVG PGE+ F + + T F YSKR TP++
Sbjct: 322 AITTDLIVGFPGETEEDFAATLDVVRQVRFTAAFTFQYSKRPGTPAA 368
>pir||S72937 hypothetical protein B2235_C2_195 - Mycobacterium leprae
gb|AAA17273.1| (U00019) B2235_C2_195 [Mycobacterium leprae]
Length = 516
Score = 122 bits (305), Expect = 1e-26
Identities = 95/347 (27%), Positives = 162/347 (46%), Gaps = 27/347 (7%)
Query: 7 KTFGCRTNLFDTQVMSENLK--DFSTTLEEQE---ADIIIINSCTVTNGADSAVRSYAKK 61
+T+GC+ N+ D++ ++ L+ + +E + AD+++ N+C V AD+ +
Sbjct: 22 RTYGCQMNVHDSERLAGLLEAAGYQRAADEADVGDADVVVFNTCAVRENADNRLYGNLSH 81
Query: 62 MA-----RLDKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALL---QEKKRFF 112
+A D ++ GC + + K ++ VFG N + LL + K
Sbjct: 82 LAPRKRNNPDMQIAVGGCLAQKDKHTVLSKAPWVDIVFGTHNLGSLPTLLDRARHNKVAQ 141
Query: 113 IDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQV 172
++ +H +++ S A++ I GC+ C +CI+PS+RG+ IL +V
Sbjct: 142 VEIVEALQHFPSSLPSARESDYAAWVSISVGCNNSCTFCIVPSLRGKEVDRSPADILAEV 201
Query: 173 GLLCSKGVQEVVLTGTNVGSYG---------KDRGSNIARLIKKLSQIAGLKRIRIGSLE 223
L + GV EV L G NV +YG ++RGS A L++ I GL+R+R S
Sbjct: 202 EALVADGVLEVTLLGQNVNAYGVSFADPALARNRGS-FAELLRSCGSIDGLERVRFTSPH 260
Query: 224 PNQINDEFLE-LLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNF 280
P + + +E + + + LH+ LQ D +L M R R + ++ + A +
Sbjct: 261 PAEFTYDVIEAMAQTPNVCPSLHMPLQSGSDRVLRAMRRSYRVERYLGIIGQVRAAMPHA 320
Query: 281 AIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSS 327
AI TD IVG PGE+ F + + T F YSKR TP++
Sbjct: 321 AITTDLIVGFPGETEEDFAATLDVVRQVRFTAAFTFQYSKRPGTPAA 367
>dbj|BAB14760.1| (AK023992) unnamed protein product [Homo sapiens]
Length = 587
Score = 122 bits (305), Expect = 1e-26
Identities = 108/418 (25%), Positives = 180/418 (42%), Gaps = 51/418 (12%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
+KVY +T+GC+ N+ DT++ L+ + T QEAD+I++ +C++ A+ + +
Sbjct: 100 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 159
Query: 60 KKM---------ARLDKEVLFTGCGVKTQGKELFEKGFLKGVF-GHDNKEKINALL---- 105
++ +R+ + GC + +E+ + + + G D + LL
Sbjct: 160 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 219
Query: 106 --QEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSF 163
Q+ + +L+ + D V T AF+ I GCD C+YCI+P RGR RS
Sbjct: 220 SGQQAANVLL--SLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSR 277
Query: 164 EERKILEQVGLLCSKGVQEVVLTGTNVGSY-------------------------GKDRG 198
ILE+V L +G++EV L G NV S+ K G
Sbjct: 278 PIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGG 337
Query: 199 SNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELL-EEDFLEKHLHIALQHSHDLMLE 257
A L+ ++S++ RIR S P DE L+L+ E D + K +H+ Q +LE
Sbjct: 338 LRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLE 397
Query: 258 RMNRRNRTKSDRELLETIASK--NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHP 315
M R ++ EL+ I ++ +DFI G GE+ + L
Sbjct: 398 AMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREAQYNMGFL 457
Query: 316 FIYSKRKDTPS-SLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
F YS R+ T + + D V E +RL + + + +A + Q + LVE
Sbjct: 458 FAYSMRQKTRAYHRLKDDVPEEVKLRRLEEL--ITIFREEATKANQTSVGCTQLVLVE 513
>gb|EAA09381.1| (AAAB01008900) agCP15149 [Anopheles gambiae str. PEST]
Length = 514
Score = 120 bits (302), Expect = 2e-26
Identities = 103/419 (24%), Positives = 189/419 (44%), Gaps = 22/419 (5%)
Query: 4 VYFKTFGCRTNLFDTQVMSENLKDF--STTLEEQEADIIIINSCTVTNGADSAVRSYAKK 61
+Y KT+GC N DT+ M+ L + + T ++ AD+ ++NSCTV N ++ R+ +
Sbjct: 68 IYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKDSADLWVLNSCTVKNPSEDTFRNEIEA 127
Query: 62 MARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENKH 121
+ K V+ GC + + + KG V G +++ +++E + L+ K
Sbjct: 128 AHQAGKHVVVAGCVPQAAPRSDYLKGL--SVVGVQQIDRVAEVVEETLKGHSVRLLQAKK 185
Query: 122 LDTTMVSE---FVGKTRA-----FIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
+D V+ + K R I I GC C YC R S+ ++I+++
Sbjct: 186 VDGRKVAGPKLALPKVRKNPLIEVIPINSGCLNACTYCKTKFARADLVSYPVQEIVDRAQ 245
Query: 174 LLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLK-RIRIGSLEPNQI---ND 229
+ GV E+ LT + G+YG+D GS++ L+ +L ++ +R+G P I D
Sbjct: 246 QVFQDGVCEIWLTSEDTGTYGRDIGSSLPELLWQLVEVIPEGCMMRLGMTNPPYILEHLD 305
Query: 230 EFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFI 287
E ++L + LHI +Q D +L M R K +++ + ++ I TD I
Sbjct: 306 EMAKILSHPRVYSFLHIPVQSGSDAILGEMRREYCVKDFERMVDFLRAQVPGITIATDII 365
Query: 288 VGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKD 347
G PGE+ + F+ E + + R TP++ MT V + K R + D
Sbjct: 366 CGFPGETEADFDDTLALCEKYQFPSLFINQFFPRPGTPAAKMT-KVPANEVKTRTKRLTD 424
Query: 348 LIFHKNKAFRQLQLKLNTPLKALVEVQKDGE-FKALDQFFNPIKIKSDKPLRASFLEIK 405
L FH + +++ + + + E+ D + F ++F+ I + L +E++
Sbjct: 425 L-FHSYEPYKKYEAGTKQTV-LVTEISHDRKHFVGHNKFYEQILLPMHNNLLGKQVEVE 481
>gb|EAA00300.1| (AAAB01008986) agCP9825 [Anopheles gambiae str. PEST]
Length = 581
Score = 120 bits (300), Expect = 4e-26
Identities = 105/389 (26%), Positives = 171/389 (42%), Gaps = 48/389 (12%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
+KV+ + +GC+ N DT+++ LK + T+ +EADI+++ +C + GA+ V +
Sbjct: 89 RKVFLEVYGCQMNTNDTEIVWSILKAHQYHRTVNLKEADIVLMMTCAIREGAEDTVWNRL 148
Query: 60 KKMARLDK----------EVLFTGCGVKTQGKELFEKGF-LKGVFGHDNKEKINALL--- 105
K + L + ++ GC + K+L EK + V G D + + LL
Sbjct: 149 KHLRLLKRKRETNGEKPLQIGVLGCMAERLKKQLVEKEHSVDVVAGPDAYKDLPRLLAIG 208
Query: 106 -QEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFE 164
+ +K + +L+ + D V AF+ I GCD C+YCI+P RG+ RS
Sbjct: 209 QRGQKAINVLLSLDETYADVVPVKLDRKSKTAFVSIMRGCDNMCSYCIVPFTRGKERSRP 268
Query: 165 ERKILEQVGLLCSKGVQEVVLTGTNVGSY---------------------------GKDR 197
+ I E+V L ++G++E+ L G NV SY K
Sbjct: 269 IKSIREEVLQLENEGIREITLLGQNVNSYRDTSDESLEDAPKEATLLAPGFRTVYKSKVG 328
Query: 198 GSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEE-DFLEKHLHIALQHSHDLML 256
G A L+ +L++ RIR S P + LE + + + LH+ Q + +L
Sbjct: 329 GLRFAELLTELAEAVPEMRIRFTSPHPKDFPVDVLETIAKYPNICNSLHLPAQSGNTQVL 388
Query: 257 ERMNRRNRTKSDRELLETIAS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIH 314
ERM R ++ L+E + N + +DFI G GES F +E +
Sbjct: 389 ERMRRGYTREAYLNLVEEVRRIIPNVTLSSDFICGFCGESEPEFADTVSLIEQVGYHAAF 448
Query: 315 PFIYSKR-KDTPSSLMTDSVSLEDSKKRL 342
F YS R K T +D V E ++RL
Sbjct: 449 LFAYSMREKTTAHRRYSDDVPEEVKQERL 477
>dbj|BAB55120.1| (AK027449) unnamed protein product [Homo sapiens]
Length = 395
Score = 119 bits (299), Expect = 5e-26
Identities = 102/388 (26%), Positives = 169/388 (43%), Gaps = 49/388 (12%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
+KVY +T+GC+ N+ DT++ L+ + T QEAD+I++ +C++ A+ + +
Sbjct: 10 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 69
Query: 60 KKM---------ARLDKEVLFTGCGVKTQGKELFEKGFLKGVF-GHDNKEKINALL---- 105
++ +R+ + GC + +E+ + + + G D + LL
Sbjct: 70 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAE 129
Query: 106 --QEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSF 163
Q+ + +L+ + D V T AF+ I GCD C+YCI+P RGR RS
Sbjct: 130 SGQQAANVLL--SLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPLTRGRERSR 187
Query: 164 EERKILEQVGLLCSKGVQEVVLTGTNVGSY-------------------------GKDRG 198
LE+V L +G++EV L G NV S+ K G
Sbjct: 188 PIASTLEEVKKLSEQGLKEVTLLGQNVNSFRGNSEVQFNSAVPTNLSRGFTTNYKTKQGG 247
Query: 199 SNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELL-EEDFLEKHLHIALQHSHDLMLE 257
A L+ ++S++ RIR S P DE L+L+ E D + K +H+ Q +LE
Sbjct: 248 LRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLE 307
Query: 258 RMNRRNRTKSDRELLETIASK--NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHP 315
M R ++ EL+ I ++ +DFI G GE+ + L +
Sbjct: 308 AMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFL 367
Query: 316 FIYSKRKDTPS-SLMTDSVSLEDSKKRL 342
F YS R+ T + + D V E +RL
Sbjct: 368 FAYSMRQKTRAYHRLKDDVPEEVKLRRL 395
>ref|XP_110019.1| (XM_110019) RIKEN cDNA 6620401C13 [Mus musculus]
ref|XP_127259.1| (XM_127259) RIKEN cDNA 6620401C13 [Mus musculus]
ref|NP_653119.1| (NM_144536) RIKEN cDNA 1190005B03 [Mus musculus]
gb|AAH16073.1|AAH16073 (BC016073) Unknown (protein for MGC:27555) [Mus musculus]
Length = 578
Score = 118 bits (296), Expect = 1e-25
Identities = 108/430 (25%), Positives = 194/430 (45%), Gaps = 33/430 (7%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQ--EADIIIINSCTVTNGADSAVRSY 58
++K++ +T+GC N D + M+ L + + E +AD+ ++NSCTV N A+ R+
Sbjct: 62 IQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNS 121
Query: 59 AKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFI----- 113
KK +K+V+ GC + Q ++ + KG + G +++ +++E +
Sbjct: 122 IKKAQEENKKVVLAGCVPQAQPRQDYLKGL--SIIGVQQIDRVVEVVEETIKGHSVRLLG 179
Query: 114 --DDN---LENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
DN L LD + + I I GC C YC RG S+ ++
Sbjct: 180 QKKDNGKRLGGARLDLPKIRK--NPLIEIISINTGCLNACTYCKTKHARGNLASYPIDEL 237
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQ-IAGLKRIRIGSLEPNQI 227
+E+ +GV E+ LT + G+YG+D G+++ L+ KL + I +R+G P I
Sbjct: 238 VERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEVIPEGAMLRLGMTNPPYI 297
Query: 228 ---NDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAI 282
+E ++L + LHI +Q + D +L M R + +++ + K I
Sbjct: 298 LEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITI 357
Query: 283 GTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRL 342
TD I G PGE+ F++ K +E + + R TP++ + V K+R
Sbjct: 358 ATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAA-KAEQVPAHVKKQR- 415
Query: 343 NAIKDL--IFHKNKAFRQLQLKLNTPLKALV-EVQKDGEF-KALDQFFNPIKIKSDKPLR 398
KDL +FH ++ K+ + LV E D +F A ++F+ + + +
Sbjct: 416 --TKDLSRVFH---SYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFM 470
Query: 399 ASFLEIKEYE 408
+E+ YE
Sbjct: 471 GKMVEVDIYE 480
>ref|NP_565035.1| (NM_105867) expressed protein [Arabidopsis thaliana]
gb|AAG51137.1|AC069273_8 (AC069273) unknown protein [Arabidopsis thaliana]
gb|AAK56263.1|AF367274_1 (AF367274) At1g72090/F28P5_4 [Arabidopsis thaliana]
Length = 601
Score = 116 bits (290), Expect = 6e-25
Identities = 92/343 (26%), Positives = 157/343 (44%), Gaps = 25/343 (7%)
Query: 4 VYFKTFGCRTNLFDTQVMSENLKDFSTTLEE--QEADIIIINSCTVTNGADSAVRSYAKK 61
+Y KTFGC N D++ M+ L F L E +EAD+ +IN+CTV + + SA+ + +
Sbjct: 66 IYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCTVKSPSQSAMSTLITR 125
Query: 62 MARLDKEVLFTGCGVKTQGKELFEKGFLKGV--FGHDNKEKINALLQE-----KKRFFID 114
K ++ GC V ++L E L+GV G +++ +++E + R
Sbjct: 126 GRSGKKPLVIAGC-VPQGSRDLKE---LEGVSVVGVQQIDRVVEIVEETLKGHEVRLLTR 181
Query: 115 DNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGL 174
L L + F+ + I GC C YC RG S+ ++E+V
Sbjct: 182 KTLPALDLPKVRRNNFI----EILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRT 237
Query: 175 LCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKR---IRIGSLEPNQINDEF 231
+ S+GV+E+ L+ + G+YG+D G N+ L+ + + + +RIG P I +
Sbjct: 238 VISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHL 297
Query: 232 LEL---LEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIGTDF 286
E+ L + LH+ +Q D +L MNR R +++T+ I TD
Sbjct: 298 KEIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDI 357
Query: 287 IVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM 329
I G PGE+ F + + ++ +H + R TP++ M
Sbjct: 358 ICGFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAAKM 400
>ref|NP_393736.1| (NC_002578) hypothetical protein [Thermoplasma acidophilum]
emb|CAC11401.1| (AL445063) hypothetical protein [Thermoplasma acidophilum]
Length = 401
Score = 116 bits (290), Expect = 6e-25
Identities = 101/408 (24%), Positives = 186/408 (44%), Gaps = 51/408 (12%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQ--EADIIIINSCTVTNGADSAVRSYAK 60
K+Y++ +GC N +T + L + L + EADI II +C V + + +
Sbjct: 2 KIYYEGYGCTLNQGETGLYVNKLLSEGSVLVSRPDEADISIIGTCAVIQKTEDHMLKRIE 61
Query: 61 KMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENK 120
+++RL + V GC +G E+ G ++ + D E Q+ + + D ++
Sbjct: 62 ELSRLGR-VKVIGCLSAIKGSEI-SGGNIEAI---DRNE-----FQQFQEYLEDTSI--- 108
Query: 121 HLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGV 180
+D ++S I I +GC CN+CI RG+ S KI+ Q+ ++ + G
Sbjct: 109 -IDAEIMSG--------IPINQGCTGKCNFCISHIARGKLVSRRPEKIVNQIRMMVAAGK 159
Query: 181 QEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPN---QINDEFLELLEE 237
+E+ ++ + +YGKD G + LIK ++ + G +R+G +EP +I D+ LE ++
Sbjct: 160 REIRISSLDTAAYGKDTGYRLPSLIKDITAVDGDFMLRVGMMEPRNTIEILDDLLEAYDD 219
Query: 238 DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIVGHPGESG 295
+ K LHI +Q D +L MNR +++E+ + + I TD I+G+ E+
Sbjct: 220 PKVFKFLHIPVQSGDDRVLTAMNREYTVDEFMQIIESFRKRFPDMTISTDVIIGYHAEND 279
Query: 296 SVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLIFHKNKA 355
F+ L + + P I + + +P L D E + N +KD +++
Sbjct: 280 RSFD-----LTCDLIRKVQPEIINVTRFSPRELTPD---FEHRPRPTNVLKD----QDRT 327
Query: 356 FRQLQLKL-NTPLKALV---------EVQKDGEFKALDQFFNPIKIKS 393
++ K+ + ALV E K G D + P+ I++
Sbjct: 328 MAEIHRKIVSERFSALVGKVERILITEDGKPGTMVGRDASYRPVVIRA 375
>ref|NP_662284.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM72626.1| (AE012897) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 434
Score = 115 bits (289), Expect = 7e-25
Identities = 97/358 (27%), Positives = 168/358 (46%), Gaps = 24/358 (6%)
Query: 4 VYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQ--EADIIIINSCTVTNGA-----DSAVR 56
++ + GC N D++ ++ T + EADII+IN+C A D +
Sbjct: 11 IFLLSLGCSKNTVDSERLTAQAVASGLTFTDNVDEADIILINTCGFIKDAKQESIDETLA 70
Query: 57 SYAKKMARLDKEVLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQEKKRFFIDD 115
+ KK + +EV GC V+ KEL E+ + G+FG ++ A + K R ++
Sbjct: 71 AIGKKEEGVVREVYVMGCLVELYRKELAEEMPEIDGLFGTRELPEVLAAIGAKYR---EE 127
Query: 116 NLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLL 175
+ + L T AF+KI EGC+ C++C IP +RG S ++L + LL
Sbjct: 128 LFDRRELLTP-------PHYAFLKIAEGCNRRCSFCSIPKIRGPYVSQPIEQLLREAALL 180
Query: 176 CSKGVQEVVLTGTNVGSYGKD--RGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLE 233
+GV+E+ L ++ YG D S + L +LS + G IR+ P E +
Sbjct: 181 QQQGVKELNLIAQDISVYGYDLYGKSALNDLTLRLSDM-GFNWIRLLYAYPLNFPLEVIS 239
Query: 234 LL-EEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASKN--FAIGTDFIVGH 290
+ E + ++ + LQH +D +L+ M R K+ +L++ I KN + T I G+
Sbjct: 240 TMRERPNVCNYIDMPLQHINDRILKSMQRGIGRKATEQLIDDIRQKNPDIRLRTTMIAGY 299
Query: 291 PGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDL 348
PGE+ + FE+ + + F Y + + + D+VS E+ +KR+ + +L
Sbjct: 300 PGETRAEFEELLDFIRQTRFDRLGCFPYRHEEHASAYALEDTVSDEEKEKRVGELMEL 357
>ref|NP_560369.1| (NC_003364) conserved hypothetical protein [Pyrobaculum aerophilum]
gb|AAL64551.1| (AE009902) conserved hypothetical protein [Pyrobaculum aerophilum]
Length = 416
Score = 115 bits (288), Expect = 1e-24
Identities = 93/363 (25%), Positives = 171/363 (46%), Gaps = 34/363 (9%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
M+KVY +T+GC D +++ + L +E+D+++I +C V + + +
Sbjct: 1 MRKVYVETYGCWLAKADAEILRQRL-GLELASNVEESDVVLIYTCAVREDGEVRQLARIR 59
Query: 61 KMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENK 120
+A+ +E++ GC + + + K G AL+ ++ ++ E
Sbjct: 60 DLAKSGREMIVAGCLARLRPYTI--KSLAPGA----------ALIYPQQ---VEGGPER- 103
Query: 121 HLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRA---RSFEERKILEQVGLLCS 177
+ ++ EF G + +Q GC +C +C RG A +S + +++ +V +
Sbjct: 104 --EMKILPEFSGGVVYTVPLQVGCLGNCTFCATKYTRGGAGYVKSADPEEVVRKVKKAVA 161
Query: 178 KGVQEVVLTGTNVGSYGKD----RGSNIARLIKK-LSQIAGLKRIRIGSLEP---NQIND 229
G +E+ LTG +V +YG + RG N+ L+++ L ++ G RIRIG EP + D
Sbjct: 162 MGAREIYLTGQDVITYGFEMRWKRGWNLPDLLERILKEVDGEYRIRIGMSEPWVFEKFAD 221
Query: 230 EFLELLEEDF-LEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIA---SKNFAIGTD 285
+ L++++ D + ++ H+ +Q D +L M R+ REL+ I + I TD
Sbjct: 222 QILDVVKRDRRVYRYFHLPVQSGSDKVLRVMGRKYTVDEYRELVRKIRRVLGETTFIATD 281
Query: 286 FIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAI 345
IVG PGE F K E L IH +S R T +++M V + K+R A+
Sbjct: 282 IIVGFPGEEEEDFWATVKLAEELQFDKIHVARFSPRPFTEAAVMPKQVPDVEKKRRSKAL 341
Query: 346 KDL 348
++
Sbjct: 342 SEI 344
>gb|AAF60223.1|AF177477_1 (AF177477) CDK5 activator-binding protein [Rattus norvegicus]
Length = 586
Score = 114 bits (285), Expect = 2e-24
Identities = 102/391 (26%), Positives = 170/391 (43%), Gaps = 49/391 (12%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
+KVY +T+GC+ N+ DT++ L+ + T QEAD+I++ +C++ A+ + +
Sbjct: 97 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 156
Query: 60 KKM---------ARLDKEVLFTGC-GVKTQGKELFEKGFLKGVFGHDNKEKINALL---- 105
++ +R+ + GC + +G+ L + + + G D + LL
Sbjct: 157 HQLKVLKAKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 216
Query: 106 --QEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSF 163
Q+ + +L+ + D V T AF+ I GCD C+YCI+P RGR RS
Sbjct: 217 SGQQAANVLL--SLDETYADIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSR 274
Query: 164 EERKILEQVGLLCSKGVQEVVLTGTNVGSY-------------------------GKDRG 198
IL++V L +G++EV L G NV S+ K G
Sbjct: 275 PVASILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFSSTGSANLSRGFTTNYKPKQGG 334
Query: 199 SNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDF-LEKHLHIALQHSHDLMLE 257
+ L+ ++S+I RIR S P DE L+L+ E + K +H+ Q +LE
Sbjct: 335 LRFSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVLE 394
Query: 258 RMNRRNRTKSDRELLETI--ASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHP 315
M R ++ L+ I A + +DFI G GE+ + L +
Sbjct: 395 AMRRGYSREAYVALVHHIREAIPGVGLSSDFITGFCGETEDDHLQTVSLLREVQYNTGFL 454
Query: 316 FIYSKRKDTPS-SLMTDSVSLEDSKKRLNAI 345
F YS R+ T + + D V E +RL +
Sbjct: 455 FAYSMRQKTRAYHRLKDDVPEEVKLRRLEEL 485
>ref|NP_629877.1| (NC_003888) conserved hypothetical protein SC7C7.07 [Streptomyces
coelicolor A3(2)]
pir||T35685 hypothetical protein SC7C7.07 SC7C7.07 - Streptomyces coelicolor
emb|CAA19853.1| (AL031031) conserved hypothetical protein SC7C7.07 [Streptomyces
coelicolor A3(2)]
Length = 493
Score = 113 bits (283), Expect = 4e-24
Identities = 100/398 (25%), Positives = 172/398 (43%), Gaps = 51/398 (12%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKDFSTTL--EEQEADIIIINSCTVTNGA-----DSA 54
+ V T GC N D++ ++ L+ L + +EAD+ ++N+C A D+
Sbjct: 5 RTVALVTLGCARNEVDSEELAGRLEADGWKLVDDAEEADVAVVNTCGFVEAAKKDSVDAL 64
Query: 55 VRSYAKKMARLDKEVLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQ------- 106
+ + K + V+ GC + GKEL + GV G D+ I+ LQ
Sbjct: 65 LEANDLKGHGRTQAVVAVGCMAERYGKELADALPEADGVLGFDDYADISDRLQTILNGGI 124
Query: 107 -------EKKRFFIDDNLENKHLDTTMVSEFVGKTR------------------------ 135
++++ E + + G T
Sbjct: 125 HAAHTPRDRRKLLPISPAERQEAGAAVALPGHGPTDLPEGVAPASGPRAPLRRRLDGSPV 184
Query: 136 AFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGK 195
A +K+ GCD C++C IPS RG S +L + L +GV+E++L N SYGK
Sbjct: 185 ASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLNETRWLAEQGVKEIMLVSENNTSYGK 244
Query: 196 DRGS--NIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELL-EEDFLEKHLHIALQHSH 252
D G + L+ L+++ G++R+R+ L+P ++ +++L + + + ++ QHS
Sbjct: 245 DLGDIRLLESLLPNLAEVDGIERVRVSYLQPAEMRPGLIDVLTSTEKVAPYFDLSFQHSA 304
Query: 253 DLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIVGHPGESGSVFEKAFKNLESLPL 310
+L M R T ELL+TI SK + ++FIVG PGES + + + L L
Sbjct: 305 PNVLRAMRRFGDTDRFLELLDTIRSKAPEAGVRSNFIVGFPGESEADLAELERFLNHARL 364
Query: 311 THIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDL 348
I F YS + T ++ D + + +RL + L
Sbjct: 365 DAIGVFGYSDEEGTEAATYGDKLDEDVVAERLARVSRL 402
>ref|NP_080152.1| (NM_025876) RIKEN cDNA 2310066P17 [Mus musculus]
dbj|BAB26700.1| (AK010097) data source:SPTR, source key:Q9JLH6,
evidence:ISS~homolog to CDK5 ACTIVATOR-BINDING
PROTEIN~putative [Mus musculus]
gb|AAH25132.1| (BC025132) RIKEN cDNA 2310066P17 gene [Mus musculus]
Length = 588
Score = 113 bits (282), Expect = 5e-24
Identities = 99/391 (25%), Positives = 170/391 (43%), Gaps = 49/391 (12%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
+KVY +T+GC+ N+ DT++ L+ + T QEAD+I++ +C++ A+ + +
Sbjct: 99 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 158
Query: 60 KKM---------ARLDKEVLFTGC-GVKTQGKELFEKGFLKGVFGHDNKEKINALL---- 105
++ +R+ + GC + +G+ L + + + G D + LL
Sbjct: 159 HQLKVLKTKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 218
Query: 106 --QEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSF 163
Q+ + +L+ + D V T AF+ I GCD C+YCI+P RGR RS
Sbjct: 219 SGQQAANVLL--SLDETYADIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSR 276
Query: 164 EERKILEQVGLLCSKGVQEVVLTGTNVGSY-------------------------GKDRG 198
IL++V L +G++EV L G NV S+ K G
Sbjct: 277 PVASILDEVRKLSEQGLKEVTLLGQNVNSFRDNSEVQFNNAGSANLSRGFTTNYKPKQGG 336
Query: 199 SNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDF-LEKHLHIALQHSHDLMLE 257
+ L+ ++S+I RIR S P DE L+L+ E + K +H+ Q +L+
Sbjct: 337 LRFSHLLDQVSRIDPEMRIRFTSPHPKDFPDEVLQLIRERHNICKQIHLPAQSGSSRVLD 396
Query: 258 RMNRRNRTKSDRELLETIAS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHP 315
M R ++ L+ + ++ +DFI G GE+ + L +
Sbjct: 397 AMRRGYSREAYVALVHHVRETIPGVSLSSDFITGFCGETEDDHRQTVSLLREVQYNTGFL 456
Query: 316 FIYSKRKDTPS-SLMTDSVSLEDSKKRLNAI 345
F YS R+ T + + D V E +RL +
Sbjct: 457 FAYSMRQKTRAYHRLKDDVPEEVKLRRLEEL 487
>ref|NP_662869.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM73211.1| (AE012950) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 444
Score = 112 bits (281), Expect = 6e-24
Identities = 101/387 (26%), Positives = 181/387 (46%), Gaps = 20/387 (5%)
Query: 5 YFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAVRS---YA 59
Y TFGC+ N D+++++ L+ F + +E ADI+++NSC V A+ + + +
Sbjct: 13 YIHTFGCQMNQADSEIVTALLRAEGFVPSADETNADIVLLNSCAVRENAEERLGNILMHL 72
Query: 60 KKMARLDKEVLF--TGCGVKTQGKELF-EKGFLKGVFGHDNKEKINALLQEKKRFFIDDN 116
K R KE++ GC + + + +F + F+ + G DN ++ L+ +
Sbjct: 73 KGRKRRCKELVIGVLGCVPQFERERVFSDYPFVDFIVGPDNYRELAGLVAGLREAVARPA 132
Query: 117 L-ENKHLDTTMVSEFV--GKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
L + +T E V G AF+ + GC+ C +C++P RGR RS +++ +V
Sbjct: 133 LLDYDQTETYAGIEPVRAGSISAFLPVMRGCNNHCAFCVVPVTRGRERSVGFERVVAEVV 192
Query: 174 LLCSKGVQEVVLTGTNVGSY-GKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFL 232
L G +EV L G NV S+ ++G + A L++ +S RIR + P I++ +
Sbjct: 193 ALEKAGFREVTLLGQNVNSWRDAEKGLDFAGLLEGVSLAVPSMRIRFTTSHPKDISEALV 252
Query: 233 ELL-EEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNFAIGTDFIVG 289
+++ L H+H+ +Q ML+ M R + + + + I S AI TD I G
Sbjct: 253 KVIAARPNLCNHIHLPVQSGSSRMLDLMKRGHTREEYLDRIAMIRSYIPEVAITTDLIAG 312
Query: 290 HPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDT-PSSLMTDSVSLEDSKKRLNAIKDL 348
E+ + +E++ F YS R T + + D V K RL I +L
Sbjct: 313 FCTETEKDHRETLSLMEAVGYDTAFMFHYSVRPGTWAARNLPDDVPDTVKKARLQEIIEL 372
Query: 349 IFHKNKAFRQL-QLKLNTPLKALVEVQ 374
+N R++ Q ++ ++ L E +
Sbjct: 373 ---QNAISREIFQREIGKTVEVLAEAE 396
>ref|NP_195357.1| (NM_119802) putative protein [Arabidopsis thaliana]
emb|CAB16849.1| (Z99708) putative protein [Arabidopsis thaliana]
emb|CAB80305.1| (AL161589) putative protein [Arabidopsis thaliana]
Length = 587
Score = 112 bits (281), Expect = 6e-24
Identities = 101/398 (25%), Positives = 169/398 (42%), Gaps = 53/398 (13%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKDFS---TTLEEQEADIIIINSCTVTNGADSAVRSYA 59
++Y +T+GC+ N+ D +++ +K+ + + A++I +N+C + A+ V
Sbjct: 77 RIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCAIRENAEQRVWQRL 136
Query: 60 KKMARLDKE-----------------VLFTGC-GVKTQGKELFEKGFLKGVFGHDNKEKI 101
L +E V+ GC + + K L + V G D +
Sbjct: 137 NYFWFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAYRDL 196
Query: 102 NALLQE----KKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVR 157
LL+E +K +LE + D + V AF+ + GC+ C +CI+P R
Sbjct: 197 PRLLEEVDYGQKGINTLLSLEETYADISPVRISENSITAFVSVMRGCNNMCAFCIVPFTR 256
Query: 158 GRARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYG----------------------- 194
GR RS I+ +VG L GV+EV L G NV SY
Sbjct: 257 GRERSRPVESIIREVGELWESGVKEVTLLGQNVNSYNDDSADRESGANWEYSEGFSSRCK 316
Query: 195 -KDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDF-LEKHLHIALQHSH 252
K+ G A L+ +LS R R S P DE L L+ + + +H+ Q +
Sbjct: 317 VKNMGLRFADLLDRLSVEFPEMRFRFTSPHPKDYPDELLYLMRDRHNICNLIHLPAQSGN 376
Query: 253 DLMLERMNRRNRTKSDRELLETIAS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPL 310
+LE+M R ++ +L++ I S + AI +DFI G GE+ ++ + ++
Sbjct: 377 SRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFITGFCGETEEEHQETLSLVRAVGY 436
Query: 311 THIHPFIYSKRKDTPSSL-MTDSVSLEDSKKRLNAIKD 347
+ F YS R+ T + TD V E ++RL + D
Sbjct: 437 DMAYMFAYSMREKTHAHRNYTDDVPEEVKQRRLTELID 474
>ref|NP_218710.1| (NC_000919) conserved hypothetical protein [Treponema pallidum]
sp|O83293|Y269_TREPA Hypothetical protein TP0269
pir||G71345 conserved hypothetical protein TP0269 - syphilis spirochete
gb|AAC65257.1| (AE001208) conserved hypothetical protein [Treponema pallidum]
Length = 482
Score = 112 bits (280), Expect = 8e-24
Identities = 109/431 (25%), Positives = 177/431 (40%), Gaps = 80/431 (18%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMS-----ENLKDFSTTLEEQEADIIIINSCTVTNGADSAV 55
M V +T GCR N +++ ++ E + +IN+CTVT+ A+
Sbjct: 1 MFSVRIETLGCRLNHVESESLAALFLQEGFAVCRGNTSTAPVVLCVINTCTVTSKAEQKA 60
Query: 56 RSYAKKMARLDKEV--LFTGCGVKTQGKELFEKGFLKGVFGHDNKEK---------INAL 104
R + + R L TGC + + L + V K+K + AL
Sbjct: 61 RRLVRLLLRTYPTAIALVTGCYAQLEPASL--EAMDDRVLAFPGKQKDALSLLPSCLRAL 118
Query: 105 LQEKKRFFIDD----------NLENKHLDTTMVSEFVGKT-------------------- 134
L ++ ID +L+ K + + SEF +T
Sbjct: 119 LVQRGPAPIDQYVCGMRALLASLKKKIISLELTSEFPSQTHMPTRNALPQLTGVPHAPRV 178
Query: 135 -------------------------RAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKIL 169
RA IK+Q+GC+ C +C I RGRA S E +++
Sbjct: 179 SVSSFSEPTAVPRFALYAPRFLFHSRASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVI 238
Query: 170 EQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQIND 229
+V L ++G+ EVVLTG N+ Y + + A L++ + Q IRI SL P +
Sbjct: 239 GRVQALEARGMSEVVLTGVNLSQY-RSGSIDFAGLLELIVQETHTIHIRISSLYPESVTS 297
Query: 230 EFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSD----RELLETIASKNFAIGTD 285
FL + + H H+++Q D +L RM RR T++D L ++ + F +G D
Sbjct: 298 AFLRAIAHTRVSPHFHLSVQSGSDRVLRRM-RRAYTRADIYQAVSDLRSVREEPF-LGCD 355
Query: 286 FIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAI 345
IVG PGE+ F + ++L IH F +S R T + M V + +R+ A+
Sbjct: 356 IIVGFPGETEEDFADTQRMCKTLRFAGIHVFPFSARPGTEAFAMDAKVPQRIAGERVAAM 415
Query: 346 KDLIFHKNKAF 356
+ L +A+
Sbjct: 416 QQLAEKNYRAY 426
>pir||T10440 conserved hypothetical protein - Mycoplasma iowae
gb|AAC44029.1| (U29676) unknown [Mycoplasma iowae]
Length = 199
Score = 110 bits (275), Expect = 3e-23
Identities = 68/185 (36%), Positives = 105/185 (56%), Gaps = 9/185 (4%)
Query: 8 TFGCRTNLFDTQVMSENL--KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKKMARL 65
T GC+ NLF++ + +L + +AD+ IIN+CTVTN AD+ R Y K+
Sbjct: 14 TLGCKVNLFESNSIKNDLIMNGLVEVPFDSKADVYIINTCTVTNKADAKSRLYIKRAHVQ 73
Query: 66 DKEVLFTGCGVKTQ-GKELFEKGFLKGVFGHDNKEK----INALLQEKKRFFIDDNL--E 118
+K+ + G +Q K+L +K + G+ K IN L++++R + +N+ E
Sbjct: 74 NKDAIIIVAGCMSQVNKDLMDKLKISIQIGNKYKNSVFDLINEYLKKRERIYRVENILAE 133
Query: 119 NKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSK 178
K TT F+ TRAFIKIQ+GC+F C+YCIIP RGR RS + ILE++ L SK
Sbjct: 134 KKFEQTTQDFIFLENTRAFIKIQDGCNFMCSYCIIPFSRGRQRSQKMESILEKIKTLVSK 193
Query: 179 GVQEV 183
++++
Sbjct: 194 NLKKL 198
>ref|NP_442485.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|Q55803|Y082_SYNY3 Hypothetical protein slr0082
pir||S76611 hypothetical protein slr0082 - Synechocystis sp. (strain PCC 6803)
dbj|BAA10555.1| (D64004) ORF_ID:slr0082~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 443
Score = 108 bits (271), Expect = 9e-23
Identities = 100/405 (24%), Positives = 187/405 (45%), Gaps = 41/405 (10%)
Query: 10 GCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCT-VTNGADSAVRSYAKKMARLD 66
GC N D++ M L + + E+ AD +I+N+C+ + + +VR+ + +A
Sbjct: 13 GCEKNRIDSEHMLGLLVEAGYQVDANEELADYVIVNTCSFIQDARQESVRTLVE-LAEAK 71
Query: 67 KEVLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQEKKR------------FFI 113
K+++ +GC + ++L E+ V G + + I +++ ++ F
Sbjct: 72 KKIVISGCLAQHFQEQLLEEIPEAVAVVGTGDYQNIVDIIRRTEQGQRVKAISPNPSFIA 131
Query: 114 DDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
D+NL + A++++ EGCD+ C +CIIP +RG+ RS I+ +
Sbjct: 132 DENLPRYRTTNEAI--------AYLRVAEGCDYRCAFCIIPQLRGKQRSRPIESIVAEAE 183
Query: 174 LLCSKGVQEVVLTGTNVGSYGKD--RGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEF 231
L S+GV+E++L +YG D +A L++ L ++ + IRI P + +
Sbjct: 184 QLASQGVKELILISQITTNYGLDLYGEPKLAELLQALGKV-DIPWIRIHYAYPTGLTPKV 242
Query: 232 LELLEE-DFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI--ASKNFAIGTDFIV 288
+E + + + +L + LQHSH +L MNR + + + +++ + A + + T FIV
Sbjct: 243 IEAIRDTPNVLPYLDLPLQHSHPDILRAMNRPWQGQVNDDIITRLKTALPDAVLRTTFIV 302
Query: 289 GHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLE---DSKKRLNAI 345
G PGE+ F ++ H+ F +S + T + + ++V E D + RL A+
Sbjct: 303 GFPGETEEHFGHLLDFVQRHQFDHVGVFTFSPEEGTAAFDLPNAVPEEVMGDRRDRLMAL 362
Query: 346 KDLIFHKNKAFRQLQLKLNTPLKALVEVQ--KDGEFKALDQFFNP 388
+ I + A L L L+E + GEF F P
Sbjct: 363 QQPISAQKNA-----ACLGQTLDVLIEQENPSTGEFIGRSTRFAP 402
>ref|NP_611207.1| (NM_137363) CG6550 gene product [Drosophila melanogaster]
gb|AAF57870.1| (AE003803) CG6550-PA [Drosophila melanogaster]
gb|AAK93058.1| (AY051634) GH28477p [Drosophila melanogaster]
Length = 552
Score = 108 bits (271), Expect = 9e-23
Identities = 89/365 (24%), Positives = 159/365 (43%), Gaps = 19/365 (5%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKDFSTTLE-EQEADIIIINSCTVTNGADSAVRSYAK 60
+KV+ KT+GC N D++ M+ L + L ++EAD+ ++NSCTV N ++ R+ +
Sbjct: 71 QKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLSGKEEADLWLLNSCTVKNPSEDTFRNEIE 130
Query: 61 KMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENK 120
R K V+ GC + K + G V G +++ +++E + L+NK
Sbjct: 131 SGMRNGKHVVVAGCVPQGAPKSDYLNGL--SVIGVQQIDRVVEVVEETLKGHSVQLLQNK 188
Query: 121 H---------LDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQ 171
++ I I GC C YC RG S+ +++E+
Sbjct: 189 KKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEVVER 248
Query: 172 VGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLK-RIRIGSLEPNQI--- 227
++G E+ LT + G+YG+D GS++ L+ +L ++ +R+G P I
Sbjct: 249 ARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPEHCMLRVGMTNPPYILEH 308
Query: 228 NDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTD 285
+E +L+ + LH+ +Q D +L M R + +++ + + I TD
Sbjct: 309 LEEVANVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGVTIATD 368
Query: 286 FIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAI 345
I G P E+ FE+ + + R TP++ M D + KKR +
Sbjct: 369 IICGFPTETEDDFEETMTLCAKYRFPSLFINQFFPRPGTPAAKM-DRIPANLVKKRTKRL 427
Query: 346 KDLIF 350
DL +
Sbjct: 428 TDLFY 432
>ref|NP_280583.1| (NC_002607) Vng1861c [Halobacterium sp. NRC-1]
gb|AAG20063.1| (AE005086) Vng1861c [Halobacterium sp. NRC-1]
Length = 432
Score = 108 bits (269), Expect = 2e-22
Identities = 89/360 (24%), Positives = 158/360 (43%), Gaps = 28/360 (7%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQ--EADIIIINSCTVTNGADSAVRSY 58
M + + +T+GC +N +++ + L+D E +AD+ I+N+CTV + +
Sbjct: 1 MARYHIETYGCTSNRGESRDIERRLRDAGHHKVETAADADVAILNTCTVVEKTERNMLRR 60
Query: 59 AKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLE 118
AK++A +++ TGC QG+ + V D+ + + +
Sbjct: 61 AKELADETADLIVTGCMALAQGEAFADADVDAQVLHWDD---------------VPEAVT 105
Query: 119 NKHLDTTM--VSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLC 176
N TT + + I GC +C+YCI GR S + +E+ L
Sbjct: 106 NGECPTTTPDAEPILDGVVGILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARALV 165
Query: 177 SKGVQEVVLTGTNVGSYGKDRGS-NIARLIKKL-SQIAGLKRIRIGSLEPNQINDEFLEL 234
G +E+ +TG + G YG D G + L++++ ++I G R+R+G P ++ EL
Sbjct: 166 HAGAKEIRITGQDTGVYGWDTGERKLPELLERIATEIEGEFRVRVGMANPGGVHGIREEL 225
Query: 235 ----LEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIV 288
E D + LH +Q D +L M R++ R+++ET + + TDFIV
Sbjct: 226 AAVFAEHDEIYNFLHAPVQSGSDDVLADMRRQHEVSQYRDIVETFNDTLGEWTLSTDFIV 285
Query: 289 GHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDL 348
G P E E + L I+ +SKR T ++ + + + K R A+ +L
Sbjct: 286 GFPTEDDDDHEASMDLLRETRPEKINVTRFSKRPGTDAAEL-KGLGGQTKKDRSKAMTEL 344
>ref|NP_498290.1| (NM_065889) F25B5.5.p [Caenorhabditis elegans]
sp|Q09316|YQT5_CAEEL Hypothetical 61.3 kDa protein F25B5.5 in chromosome III
pir||T16145 hypothetical protein F25B5.5 - Caenorhabditis elegans
gb|AAC46526.1| (U23172) Hypothetical protein F25B5.5 [Caenorhabditis elegans]
Length = 547
Score = 107 bits (267), Expect = 3e-22
Identities = 106/409 (25%), Positives = 171/409 (40%), Gaps = 50/409 (12%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
+ V + T+GC+ N+ D +++ + F + +++ ADI+++ +C++ +GA+ V +
Sbjct: 79 RTVCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRDGAEKKVWNQL 138
Query: 60 KKM----ARLDKEVLFTGCGVKTQGKELFEKGFLKGVF-GHDNKEKINALLQE----KKR 110
K + + V GC + +L EK L + G D+ + L+
Sbjct: 139 KLIRSNSVNKGQIVGVLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAGGSNG 198
Query: 111 FFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILE 170
+ +L+ + D + AFI I GCD C YC++P RGR RS I+E
Sbjct: 199 INVQLSLDETYADVQPIRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVE 258
Query: 171 QVGLLCSKGVQEVVLTGTNVGSY----------------------------GKDRGSNIA 202
+V L +G ++V L G NV SY K G
Sbjct: 259 EVQRLRDQGYKQVTLLGQNVNSYRDMTSMDFSMAPSTSQEDRVPGFKTVYKPKSGGLTFT 318
Query: 203 RLIKKLSQIAGLKRIRIGSLEPNQINDEFLELL-EEDFLEKHLHIALQHSHDLMLERMNR 261
L++K++ A R R S P + +EL+ L K LH+ Q D LERM R
Sbjct: 319 TLLEKVADAAPDIRFRFTSPHPKDFPMQLIELIASRPNLCKQLHLPAQSGDDETLERMER 378
Query: 262 RNRTKSDRELLETI--ASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYS 319
L++ I + ++ +DFI G GE+ + + ++ + F YS
Sbjct: 379 GYTRDLYLRLVDDIRHVLPSVSLTSDFIAGFCGETEQAHQNTLSLIRAVRYSFCFVFPYS 438
Query: 320 KR-KDTPSSLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPL 367
R K +TD V ED K R + DL FR+ LKLN L
Sbjct: 439 MRGKTRAHHRLTDDVP-EDVKARRHL--DL----TTVFREEALKLNQAL 480
>ref|NP_057166.1| (NM_016082) CGI-05 protein; hypothetical protein [Homo sapiens]
gb|AAD34147.1|AF152097_1 (AF152097) CGI-05 protein [Homo sapiens]
Length = 554
Score = 106 bits (265), Expect = 4e-22
Identities = 108/431 (25%), Positives = 180/431 (41%), Gaps = 64/431 (14%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENL-KDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
+KVY +T+GC+ N+ DT++ L K AD+I++ +C++ A+ + +
Sbjct: 61 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRPVTSRADVILLVTCSIREKAEQTIWNRLH 120
Query: 61 KM---------ARLDKEVLFTGCGVKTQGKELFEKGFLKGVF-GHDNKEKINALL----- 105
++ +R+ + GC + +E+ + + + G D + LL
Sbjct: 121 QLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAES 180
Query: 106 -QEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARS-- 162
Q+ + +L+ + D V T AF+ I GCD C+YCI+P RGR RS
Sbjct: 181 GQQAANVLL--SLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSRP 238
Query: 163 -----FEERKILEQVGL-------LCSKGVQEVVLTGTNVGSY----------------- 193
E +K+ EQV L L +G++EV L G NV S+
Sbjct: 239 IASILEEVKKLSEQVFLPPRPPKVLGLQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLS 298
Query: 194 --------GKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELL-EEDFLEKHL 244
K G A L+ ++S++ RIR S P DE L+L+ E D + K +
Sbjct: 299 RGFTTNYKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQI 358
Query: 245 HIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NFAIGTDFIVGHPGESGSVFEKAF 302
H+ Q +LE M R ++ EL+ I ++ +DFI G GE+ +
Sbjct: 359 HLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTV 418
Query: 303 KNLESLPLTHIHPFIYSKRKDTPS-SLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQL 361
L + F YS R+ T + + D V E +RL + + + +A + Q
Sbjct: 419 SLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEEL--ITIFREEATKANQT 476
Query: 362 KLNTPLKALVE 372
+ LVE
Sbjct: 477 SVGCTQLVLVE 487
>ref|NP_637912.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM41836.1| (AE012368) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 457
Score = 100 bits (250), Expect = 2e-20
Identities = 102/443 (23%), Positives = 195/443 (43%), Gaps = 40/443 (9%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
KV F + GC L D++ + L+ + AD++++N+C + A +
Sbjct: 7 KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 66
Query: 61 KMARLDKEVLFTGCGVKT--QGKELFEKGFLKGVFGHDN----KEKINALLQEKKRFFID 114
+ + +V+ TGC K Q +E + + + V G + E ++A L + F+D
Sbjct: 67 EAMNANGKVIVTGCLGKRPEQIREAYPQ--VLAVSGPQDYQSVMEAVHAALPPRHDPFVD 124
Query: 115 DNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGL 174
L + + A++KI EGC+ C++CIIPS+RG S ++L +
Sbjct: 125 -------LVPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLASRPVDEVLREAER 177
Query: 175 LCSKGVQEVVLTGTNVGSYGKD--------RGSNIARLIKKLSQIAGLKRI----RIGSL 222
L GV+E+++ + +YG D R +K L + GL + R+ +
Sbjct: 178 LVRGGVKELLVVSQDTSAYGVDLKYAERPWRDRMYQTRMKALCE--GLSELGVWTRLHYV 235
Query: 223 EPNQINDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLE--TIASKNF 280
P D+ + L+ E L +L I QH+ +L+ M R + E ++
Sbjct: 236 YPYPHVDDVIPLMAEGKLLPYLDIPFQHASPRILKLMKRPGAVEKTLERVQRWKAMCPEI 295
Query: 281 AIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKK 340
+ + FIVG PGE+ + FE + L+ L + F YS + ++ + D V E ++
Sbjct: 296 TVRSTFIVGFPGETDAEFEALLEFLDQAQLDRVGAFAYSPVEGASANALPDPVPEELKQE 355
Query: 341 RLNAIKDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFKALDQFFNP-----IKIKSDK 395
RL + + + +L+ K+ + + LV++ +D A + P + I++
Sbjct: 356 RL--ARFMARQAEISAARLEAKIGSVQQCLVDLIEDDIAVARSRADAPEIDGLVHIQNGG 413
Query: 396 PLRASFLEIKEYEIKERENHAVF 418
L+ ++ + EI + + H +F
Sbjct: 414 ELKLKVGDLVDVEITDSDEHDLF 436
>ref|NP_246510.1| (NC_002663) unknown [Pasteurella multocida]
sp|Q9CKN9|YF71_PASMU Hypothetical protein PM1571
gb|AAK03655.1| (AE006194) unknown [Pasteurella multocida]
Length = 446
Score = 99.4 bits (246), Expect = 7e-20
Identities = 98/405 (24%), Positives = 181/405 (44%), Gaps = 41/405 (10%)
Query: 1 MKKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
+ + F + GC NL D++ + L+ ++ + AD++I+N+C DSAV+
Sbjct: 5 LPNIGFISLGCPKNLVDSERILTELRSDGYNIIPSYENADLVIVNTCGFI---DSAVQES 61
Query: 59 AKKMARLDKE---VLFTGC-GVKTQG-KELFEKGFLKGVFGHDNKEKINALLQEKKRFFI 113
+ + +E V+ TGC G K +E+ K V A++Q+ ++ +
Sbjct: 62 LEAIGEALEENGKVIVTGCLGAKEDRIREVHPK-----VLEVTGPHSYEAVMQQVHKY-V 115
Query: 114 DDNLENKHLDTTMVS--EFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQ 171
N +++ + K A++KI EGCD C +CIIPS+RG S ++L++
Sbjct: 116 PKPAYNPYVNLVPKQGVKLTPKHYAYLKISEGCDHRCTFCIIPSMRGDLDSRSITQVLDE 175
Query: 172 VGLLCSKGVQEVVLTGTNVGSYGKDRG----------------SNIARLIKKLSQIAGLK 215
L GV+E+++ + +Y DR +N+ L ++L ++
Sbjct: 176 AKRLVEAGVKEILVVSQDTSAYALDRSKEEQNKTVFWNGMPIKNNLISLCEQLGKLG--V 233
Query: 216 RIRIGSLEPNQINDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETI 275
+R+ + P D+ + L+ E + +L I LQH+ +L+ M R + E ++
Sbjct: 234 WVRLHYVYPYPHVDQLIPLMAEGKILPYLDIPLQHASPKILKAMKRPGSIERTLERIKKW 293
Query: 276 AS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSV 333
+ + + FIVG PGES F+ L+ L + F +S + ++ M D V
Sbjct: 294 REICPDLTLRSTFIVGFPGESEEDFQLLLDFLKEALLDRVGCFKFSPVEGAIATEMPDQV 353
Query: 334 SLEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALV-EVQKDG 377
E + R + L + + +LQ K+ LV EV ++G
Sbjct: 354 PEEVKEARFHRFMQL--QQEISAARLQQKVGKVFTVLVDEVDEEG 396
>ref|NP_643044.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37580.1| (AE011913) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 457
Score = 98.2 bits (243), Expect = 2e-19
Identities = 101/443 (22%), Positives = 192/443 (42%), Gaps = 40/443 (9%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
KV F + GC L D++ + L+ + AD++++N+C + A +
Sbjct: 7 KVGFVSLGCPKALVDSERILTQLRVEGYDIVPSYDAADVVVVNTCGFIDSAVTESLDAIG 66
Query: 61 KMARLDKEVLFTGCGVKT--QGKELFEKGFLKGVFGHDN----KEKINALLQEKKRFFID 114
+ + +V+ TGC K Q +E + + + V G + E ++A L + F+D
Sbjct: 67 EAMNANGKVIVTGCLGKRPEQIREAYPQ--VLAVSGPQDYQSVMEAVHAALPPRHDPFVD 124
Query: 115 DNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGL 174
L + + A++KI EGC+ C++CIIPS+RG S ++L +
Sbjct: 125 -------LVPDYGIKLTPRHYAYLKISEGCNHRCSFCIIPSMRGDLVSRPVDEVLREAER 177
Query: 175 LCSKGVQEVVLTGTNVGSYGKD------------RGSNIARLIKKLSQIAGLKRIRIGSL 222
L GV+E+++ + +YG D + + L + LS++ R+ +
Sbjct: 178 LVRGGVKELLVVSQDTSAYGVDLKYAERPWRDRLYQTRMKALCEGLSELGVWTRLHY--V 235
Query: 223 EPNQINDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLE--TIASKNF 280
P D+ + L+ E L +L I QH+ +L+ M R + E ++
Sbjct: 236 YPYPHVDDVIGLMAEGKLLPYLDIPFQHASPRILKLMKRPGAVEKTLERVQRWKAMCPEI 295
Query: 281 AIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKK 340
+ + FIVG PGE+ + FE L+ L + F YS ++ + D V E ++
Sbjct: 296 TVRSTFIVGFPGETDAEFESLLDFLDQAQLDRVGAFAYSPVDGASANALPDQVPEEVKQE 355
Query: 341 RLNAIKDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFKALDQFFNP-----IKIKSDK 395
RL + + + +L+ K+ + + LV+V +D A + P + I++
Sbjct: 356 RL--ARFMAKQAQISALRLESKIGSVQQCLVDVIEDDIAVARSRADAPEIDGLVHIQNGG 413
Query: 396 PLRASFLEIKEYEIKERENHAVF 418
L ++ + EI + + H +F
Sbjct: 414 ELGLKVGDLVDVEITDSDEHDLF 436
>pir||T10441 conserved hypothetical protein - Mycoplasma iowae
gb|AAC44030.1| (U29676) unknown [Mycoplasma iowae]
Length = 249
Score = 97.4 bits (241), Expect = 3e-19
Identities = 69/207 (33%), Positives = 108/207 (51%), Gaps = 11/207 (5%)
Query: 178 KGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEE 237
K +E+VLTG N Y + + L+ ++++ G R+RI SLEP QINDE ++L+
Sbjct: 4 KKFKEIVLTGVNTAGYLDENNNTFFDLLNNINKLDGDFRVRISSLEPFQINDEIIDLVTS 63
Query: 238 DFLE--KHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK----NFAIGTDFIVGHP 291
+ +H HI LQ D +L++MNR+ T +L++ I +K NF TD+IVG P
Sbjct: 64 NKKRFCQHWHICLQSGSDDVLKKMNRKYTTDEFYKLMQKILNKSPLTNFT--TDYIVGFP 121
Query: 292 GESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLIFH 351
E+ +K+ L + L +H F YSKR +T SS D ++ K R+ I L +
Sbjct: 122 TETDEDQKKSIDFLNKIKLYDMHIFPYSKRNNTRSSHYKD-INDSTKKDRVKEITKLNYL 180
Query: 352 KNKAFRQLQLKLNTPLKALVEVQKDGE 378
K L+ + + L E +K+ E
Sbjct: 181 NKK--ENLKKYIGKTCEVLFEKKKEDE 205
>ref|NP_232248.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||H82054 conserved hypothetical protein VC2620 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF95761.1| (AE004328) conserved hypothetical protein [Vibrio cholerae]
Length = 470
Score = 97.4 bits (241), Expect = 3e-19
Identities = 98/398 (24%), Positives = 178/398 (44%), Gaps = 35/398 (8%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
K+ F + GC NL D++ + L+ + ++D++I+N+C DSAV+
Sbjct: 34 KIGFVSLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFI---DSAVQESLD 90
Query: 61 KMARLDKE---VLFTGC-GVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDN 116
+ KE V+ TGC G + L G+ G + + E +
Sbjct: 91 TIGEALKENGKVIVTGCLGAREDEIRQVHPNVL-GITGPHAYQNV----LEHVHQYAPKP 145
Query: 117 LENKHLDTTMVSE----FVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQV 172
N T++V + K A++KI EGC+ C +CIIPS+RG S +I+ +
Sbjct: 146 AHNPF--TSLVPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEIIGEA 203
Query: 173 GLLCSKGVQEVVLTGTNVGSYGKD--------RGSNIARLIKKLSQIAGLKRI--RIGSL 222
L + GV+E+++ + +YG D GS + IK LS+ G I R+ +
Sbjct: 204 ERLKNAGVKELLVISQDTSAYGVDTKHSLGFANGSPVRHNIKALSEELGKMGIWVRLHYV 263
Query: 223 EPNQINDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS--KNF 280
P DE + L+ E + +L I QH+ +L+ M R + + E ++
Sbjct: 264 YPYPHVDEIIPLMAEGKVLPYLDIPFQHASPRVLKMMKRPGQAERTLERIKKWREICPEL 323
Query: 281 AIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKK 340
I + FIVG PGE+ F+ L+ L + F YS + ++ + D + + +
Sbjct: 324 VIRSTFIVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIEDQIPEDVKQD 383
Query: 341 RLNAIKDLIFHKNKAFRQLQLKLNTPLKALV-EVQKDG 377
R + ++ + + +LQ ++ + ++ L+ EV ++G
Sbjct: 384 RFE--RFMLVQQEISAAKLQKRIGSTMQVLIDEVDEEG 419
>ref|NP_286601.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_308942.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_415356.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P75802|YLIG_ECOLI Hypothetical protein yliG
pir||C64821 conserved hypothetical protein b0835 - Escherichia coli
gb|AAC73922.1| (AE000185) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35530.1| (D90721) Hypothetical 51.7 kd protein in dnaJ-rpsU interegenic
region. [Escherichia coli]
dbj|BAA35538.1| (D90722) Hypothetical 51.7 kd protein in dnaJ-rpsU interegenic
region. [Escherichia coli]
gb|AAG55211.1|AE005265_1 (AE005265) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB34338.1| (AP002553) hypothetical protein [Escherichia coli O157:H7]
Length = 441
Score = 96.7 bits (239), Expect = 5e-19
Identities = 100/404 (24%), Positives = 181/404 (44%), Gaps = 47/404 (11%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
K+ F + GC NL D++ + L+ + +AD++I+N+C DSAV+ +
Sbjct: 9 KIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFI---DSAVQESLE 65
Query: 61 KMARLDKE---VLFTGC-GVKT-QGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDD 115
+ E V+ TGC G K Q +E+ K + + G + E++ E ++
Sbjct: 66 AIGEALNENGKVIVTGCLGAKEDQIREVHPK--VLEITGPHSYEQV----LEHVHHYVPK 119
Query: 116 NLENKHLDTTMVS--EFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
N L + + A++KI EGC+ C +CIIPS+RG S ++L +
Sbjct: 120 PKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSEAK 179
Query: 174 LLCSKGVQEVVLTGTNVGSYGKD------------RGSNIARLIKKLSQIAGLKRIRIGS 221
L GV+E+++ + +YG D +++ L ++LS++ R+
Sbjct: 180 RLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGIWTRLHY-- 237
Query: 222 LEPNQINDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRN-------RTKSDRELLET 274
+ P D+ + L+ E + +L I LQH+ +L+ M R R K RE+
Sbjct: 238 VYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPE 297
Query: 275 IASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVS 334
+ + + FIVG PGE+ F+ L+ L + F YS + ++ + D V
Sbjct: 298 L-----TLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANALPDQVP 352
Query: 335 LEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALV-EVQKDG 377
E ++R N L + + +LQ K+ + ++ EV ++G
Sbjct: 353 EEVKEERWNRFMQL--QQQISAERLQEKVGREILVIIDEVDEEG 394
>ref|NP_455386.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD05298.1| (AL627268) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 441
Score = 95.1 bits (235), Expect = 1e-18
Identities = 100/404 (24%), Positives = 180/404 (43%), Gaps = 47/404 (11%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
K+ F + GC NL D++ + L+ + +AD++I+N+C DSAV+ +
Sbjct: 9 KIGFVSLGCPKNLVDSERILTELRTEGYDVVPHYDDADMVIVNTCGFI---DSAVQESLE 65
Query: 61 KMARLDKE---VLFTGC-GVKT-QGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDD 115
+ E V+ TGC G K Q +E+ K + + G + E++ + ++
Sbjct: 66 AIGEALNENGKVIVTGCLGAKEDQIREVHPK--VLEITGPHSYEQV----LQHVHHYVPK 119
Query: 116 NLENKHLDTTMVS--EFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
N L + + A++KI EGC+ C +CIIPS+RG S +L +
Sbjct: 120 PKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLSEAK 179
Query: 174 LLCSKGVQEVVLTGTNVGSYGKD------------RGSNIARLIKKLSQIAGLKRIRIGS 221
L GV+E+++ + +YG D +++ L ++LS++ R+
Sbjct: 180 RLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPMKTSMVSLCEQLSKLGVWTRLHY-- 237
Query: 222 LEPNQINDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRN-------RTKSDRELLET 274
+ P D+ + L+ E + +L I LQH+ +L+ M R R K RE+
Sbjct: 238 VYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPE 297
Query: 275 IASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVS 334
+ + + FIVG PGE+ F+ L+ L + F YS + ++ + D V
Sbjct: 298 L-----TLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANELPDQVP 352
Query: 335 LEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALV-EVQKDG 377
E ++R N L + + +LQ K+ + +V EV ++G
Sbjct: 353 EEVKEERWNRFMQL--QQQISAERLQEKVGREILVIVDEVDEEG 394
>ref|NP_459829.1| (NC_003197) putative Fe-S oxidoreductases family 1 [Salmonella
typhimurium LT2]
gb|AAL19788.1| (AE008735) putative Fe-S oxidoreductases family 1 [Salmonella
typhimurium LT2]
Length = 441
Score = 94.4 bits (233), Expect = 2e-18
Identities = 100/404 (24%), Positives = 180/404 (43%), Gaps = 47/404 (11%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
K+ F + GC NL D++ + L+ + +AD++I+N+C DSAV+ +
Sbjct: 9 KIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDDADMVIVNTCGFI---DSAVQESLE 65
Query: 61 KMARLDKE---VLFTGC-GVKT-QGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDD 115
+ E V+ TGC G K Q +E+ K + + G + E++ + ++
Sbjct: 66 AIGEALNENGKVIVTGCLGAKEDQIREVHPK--VLEITGPHSYEQV----LQHVHHYVPK 119
Query: 116 NLENKHLDTTMVS--EFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
N L + + A++KI EGC+ C +CIIPS+RG S +L +
Sbjct: 120 PKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDVLSEAK 179
Query: 174 LLCSKGVQEVVLTGTNVGSYGKD------------RGSNIARLIKKLSQIAGLKRIRIGS 221
L GV+E+++ + +YG D +++ L ++LS++ R+
Sbjct: 180 RLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLGVWTRLHY-- 237
Query: 222 LEPNQINDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRN-------RTKSDRELLET 274
+ P D+ + L+ E + +L I LQH+ +L+ M R R K RE+
Sbjct: 238 VYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWREICPE 297
Query: 275 IASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVS 334
+ + + FIVG PGE+ F+ L+ L + F YS + ++ + D V
Sbjct: 298 L-----TLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGAGANELPDQVP 352
Query: 335 LEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALV-EVQKDG 377
E ++R N L + + +LQ K+ + +V EV ++G
Sbjct: 353 EEVKEERWNRFMQL--QQQISAERLQEKVGREILVIVDEVDEEG 394
>gb|AAG43441.1|AF186181_1 (AF186181) slr0082 [Synechococcus sp. PCC 7002]
Length = 317
Score = 94.0 bits (232), Expect = 3e-18
Identities = 66/242 (27%), Positives = 121/242 (49%), Gaps = 8/242 (3%)
Query: 136 AFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGK 195
A++++ EGCD+ C +CIIP +RG RS I+ + L +GVQE++L +YGK
Sbjct: 24 AYLRVAEGCDYRCAFCIIPHLRGDQRSRPIESIVAEAKQLAEQGVQEIILISQITTNYGK 83
Query: 196 D--RGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEE-DFLEKHLHIALQHSH 252
D +A L++ L + + IRI P + E + + + + +L + LQHSH
Sbjct: 84 DIYGKPKLAELLRALGGV-DVPWIRIHYAYPTGLTPEVIAAMRDTPNVIPYLDLPLQHSH 142
Query: 253 DLMLERMNRRNRTKSDRELLETI--ASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPL 310
+L MNR + + + ++E + A + + T FIVG PGE+ F+ ++
Sbjct: 143 PDILRAMNRPWQGRVNDRIIEDLKKALPDAILRTTFIVGFPGETEEHFQHLVDFVKRHEF 202
Query: 311 THIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKAL 370
H+ F +S + TP+ + + + R +A+ ++ + A R+ +L + + L
Sbjct: 203 DHVGVFTFSAEEGTPAIDLPNQLPQSVKDSRRDALMEI--QQPIAARRNELCVGQTVDVL 260
Query: 371 VE 372
+E
Sbjct: 261 IE 262
>gb|EAA02284.1| (AAAB01003427) ebiP1722 [Anopheles gambiae str. PEST]
Length = 433
Score = 94.0 bits (232), Expect = 3e-18
Identities = 93/402 (23%), Positives = 176/402 (43%), Gaps = 43/402 (10%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGA-DSAVRSYA 59
KV F + GC NL D++ + L+ + +A+++++N+C + A ++ +
Sbjct: 9 KVGFVSLGCPKNLVDSERILTQLRTEGYDVVPSYDDAEVVVVNTCGFFDSAVQESLEAIG 68
Query: 60 KKMARLDKEVLFTGC-GVK-TQGKELFEKGF-------LKGVFGHDNKEKINALLQEKKR 110
+ +A K V+ TGC G K Q +E+ K + V GH +K
Sbjct: 69 EALAENGK-VIVTGCLGAKENQIREIHPKVLEITGPHAYEEVLGHVHK------------ 115
Query: 111 FFIDDNLENKHLDTTMVS--EFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKI 168
+++ N + + A++KI EGC+ C +CIIPS+RG S ++
Sbjct: 116 -YVEKPTHNPFTSLVPAQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEV 174
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYG---KDRGSNIARLIKKLSQIAGLKR-------IR 218
L + L GV+E+++ + +YG K R + K S +A + +R
Sbjct: 175 LAEAKRLKEAGVKEILVISQDTSAYGVDVKHRTGFYDGMPVKTSMVALCEELAKLGMWVR 234
Query: 219 IGSLEPNQINDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS- 277
+ + P D+ + L+ + + +L I LQH+ +L+ M R + E ++
Sbjct: 235 LHYVYPYPHVDDVIPLMRDGKVLPYLDIPLQHASPRILKLMKRPGTVERTLERIQKWREI 294
Query: 278 -KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLE 336
+ + FIVG PGE+ F+ ++ L + F YS + ++ + D V E
Sbjct: 295 CPEITLRSTFIVGFPGETEEEFQMLLDFIDKAELDRVGCFKYSPVEGAKANELPDPVPEE 354
Query: 337 DSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALV-EVQKDG 377
++R +L + + R+L K+ + L+ EV ++G
Sbjct: 355 VQEERFQRFMEL--QQQVSIRKLARKVGKEMLVLIDEVDEEG 394
>ref|NP_519757.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD15338.1| (AL646065) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 453
Score = 93.2 bits (230), Expect = 5e-18
Identities = 105/409 (25%), Positives = 181/409 (43%), Gaps = 49/409 (11%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCT-VTNGADSAVRSYA 59
KV F + GC L D++ + L+ + + AD++++N+C + ++ +
Sbjct: 10 KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYGGADLVVVNTCGFIDEAVQESLDAIG 69
Query: 60 KKMARLDKEVLFTGC-GVKTQ--GKELFEKGFLK--GVFGH----DNKEKINALLQEKKR 110
+ +A K V+ TGC G K G+++ K V G + E ++ L +
Sbjct: 70 EALAENGK-VIVTGCLGAKKDAAGQDIITSVHPKVLAVTGPHALGEVMEAVHTHLPKPHD 128
Query: 111 FFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILE 170
FID L + K A++KI EGC+ C++CIIPS+RG S +++
Sbjct: 129 PFID-------LVPPQGIKLTPKHYAYLKISEGCNHRCSFCIIPSMRGDLVSRPVAEVML 181
Query: 171 QVGLLCSKGVQEVVLTGTNVGSYGKD------------RGSNIARLIKKLSQIAGL--KR 216
+ L GV+E+++ + +YG D + + L+ L ++A
Sbjct: 182 EAENLLKAGVKELLVISQDTSAYGVDVKFRTGFWNGRPLKTRMTELVGALGELAAQYGAW 241
Query: 217 IRIGSLEPNQINDEFLELLEEDFLEKHLHIALQHSHDLMLERMNR-RNRTKS-DRELLET 274
+R+ + P DE + L+ E + +L + LQH+H +L+RM R N K+ DR
Sbjct: 242 VRLHYVYPYPSVDEVMPLMAEGKVLPYLDVPLQHAHPEVLKRMKRPANAEKTLDRIRAWR 301
Query: 275 IASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYS-----KRKDTPSSLM 329
I + FI G PGE+ F+ + L + F YS D P +L
Sbjct: 302 EVCPELTIRSTFIAGFPGETEEEFQTLLDFIAEAELDRVGCFAYSPVEGATANDLPGAL- 360
Query: 330 TDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALV-EVQKDG 377
D V E+ + R + + + + R+LQ K+ L+ LV EV +DG
Sbjct: 361 PDEVR-EERRARFMEVAERV-----SARRLQRKVGKTLRVLVDEVNQDG 403
>gb|AAF23796.1|AF213822_11 (AF213822) hypothetical protein [Zymomonas mobilis]
Length = 443
Score = 92.4 bits (228), Expect = 9e-18
Identities = 89/394 (22%), Positives = 179/394 (44%), Gaps = 28/394 (7%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKDFSTTLEEQ--EADIIIINSCTVTNGA-DSAVRSYA 59
K+ + GC L D++ + L+ L Q EAD++++N+C + A + ++ +
Sbjct: 10 KIGMVSLGCPKALVDSERILTKLRSEGYNLSSQYDEADVVLVNTCGFIDSAKEESLDAIG 69
Query: 60 KKMARLDKEVLFTGCGVKTQGKELFEK-GFLKGVFGHDNKEKINALLQEKKRFFIDDNLE 118
+ MA + V+ TGC + + + E+ + + G E++ + + + ++
Sbjct: 70 EAMAE-NGRVIVTGC-LGNEANRIRERFPDILAITGAQQYEEVVSAVHDAAPIEASPYVD 127
Query: 119 NKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSK 178
L + + +++KI EGC+ C++CIIPS+RG S IL + L +
Sbjct: 128 ---LVPEQGLKLTPRHYSYLKISEGCNHRCSFCIIPSLRGDLVSRRADAILREAEKLVAA 184
Query: 179 GVQEVVLTGTNVGSYG----------KDR--GSNIARLIKKLSQIAGLKRIRIGSLEPNQ 226
G +E+++ G + +YG KDR +++ L + L ++ +R+ + P
Sbjct: 185 GTKELLVIGQDSSAYGVDLRHQEYRWKDRMVKADLTDLARGLGELGAW--VRLHYVYPYP 242
Query: 227 INDEFLELLEEDFLEKHLHIALQHSHDLMLERMNR-RNRTK-SDRELLETIASKNFAIGT 284
D + L+ E + +L I QH+ +L+RM R N K DR + A+ +
Sbjct: 243 HVDNLIPLMAEGLILPYLDIPFQHASPSVLKRMKRPANEVKILDRLTKWREIVPDIALRS 302
Query: 285 DFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNA 344
F+VG PGE+ F+ L+ L + F + + ++ +V E +R
Sbjct: 303 SFVVGFPGETEQDFQYLLDWLDEAQLDRVGAFRFEAVEGAAANAFDGAVPEEVKNERYQR 362
Query: 345 IKDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGE 378
+ + ++A +LQ K+ + +++ + DGE
Sbjct: 363 LMEKAAQISEA--KLQAKIGRDIATIID-RTDGE 393
>ref|NP_249607.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||G83532 conserved hypothetical protein PA0916 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG04305.1|AE004525_13 (AE004525) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 440
Score = 92.0 bits (227), Expect = 1e-17
Identities = 99/404 (24%), Positives = 175/404 (42%), Gaps = 45/404 (11%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
KV F + GC L D++ + L+ + ++AD++++N+C + A +
Sbjct: 7 KVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIG 66
Query: 61 KMARLDKEVLFTGC-GVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLEN 119
+ + +V+ TGC GV+ L V G E++ + E + E+
Sbjct: 67 EAIAENGKVIVTGCMGVEEHAIRDVHPSVL-AVTGPQQYEQVVTAVHE----VVPPKTEH 121
Query: 120 KHLDTTMVSEFVGKTR---AFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLC 176
L + + V T A++KI EGC+ C++CIIPS+RG+ S +L + L
Sbjct: 122 NPLVDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERLV 181
Query: 177 SKGVQEVVLTGTNVGSYGKD--------RGSNIARLIKKLSQIAGLKR--IRIGSLEPNQ 226
GV+E+++ + +YG D G + +K+L + +R+ + P
Sbjct: 182 KAGVKELLVISQDTSAYGVDLKYKTDFWNGQPVKTRMKELCEALSSMGVWVRLHYVYPYP 241
Query: 227 INDEFLELLEEDFLEKHLHIALQHSHDLMLERMNR-------RNRTKSDRELLETIASKN 279
D+ + L+ L +L I QH+ +L+ M R R K RE+ +
Sbjct: 242 NVDDVIPLMAAGKLLPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKQWREICPEL---- 297
Query: 280 FAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLM-----TDSVS 334
I + FIVG PGE+ F+ L L + F YS + P++ + D V
Sbjct: 298 -TIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANELGLEPVPDEVK 356
Query: 335 LEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALV-EVQKDG 377
+D +R A + I + +LQLK+ ++ L+ EV + G
Sbjct: 357 -QDRWERFMAHQQAI-----SAARLQLKVGKEIEVLIDEVDEQG 394
>gb|AAC38321.2| (AF026544) unknown [Ralstonia eutropha]
Length = 505
Score = 92.0 bits (227), Expect = 1e-17
Identities = 95/402 (23%), Positives = 178/402 (43%), Gaps = 35/402 (8%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGADSAVRSYAK 60
+V F + GC L D++ + L+ ++ + AD++++N+C + A
Sbjct: 62 RVGFVSLGCPKALVDSEQIITQLRAEGYAISGTYDGADLVVVNTCGFIDEAVQESLDAIG 121
Query: 61 KMARLDKEVLFTGC-GVKTQ--GKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNL 117
+ + +V+ TGC G K G ++ K V + ++Q + +L
Sbjct: 122 EALTENGKVIVTGCLGAKKDAAGHDIVSSVHPK-VLAVTGPHALGEVMQA-----VHTHL 175
Query: 118 ENKHLDTTMVSEFVG-----KTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQV 172
H T + G K A++KI EGC+ C++CIIPS+RG S +++ +
Sbjct: 176 PKPHDPFTDLVPAAGIKLTPKHYAYLKISEGCNHRCSFCIIPSMRGDLVSRPVAEVMLEA 235
Query: 173 GLLCSKGVQEVVLTGTNVGSYGKD------------RGSNIARLIKKLSQIAGL--KRIR 218
L GV+E+++ + +YG D + + L+ L ++A +R
Sbjct: 236 ENLFKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPLKTRMTELVAALGELAAQYGAWVR 295
Query: 219 IGSLEPNQINDEFLELLEEDFLEKHLHIALQHSHDLMLERMNR-RNRTKS-DRELLETIA 276
+ + P DE + L+ + + +L + LQH+H +L+RM R N K+ DR
Sbjct: 296 LHYVYPYPHVDEIIPLMSQGHVLPYLDVPLQHAHPDVLKRMKRPANAEKTMDRIRAWREI 355
Query: 277 SKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLE 336
I + FI G PGE+ + F+ + L + F YS + ++ + ++ E
Sbjct: 356 CPELTIRSTFIAGFPGETEAEFQTLLDFIAEAELDRVGCFAYSPVEGATANDLPGALPDE 415
Query: 337 DSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALV-EVQKDG 377
++R ++ + + R+LQ K+ L+ LV EV +DG
Sbjct: 416 VREERRARFMEVA--EEVSARRLQRKVGQTLRVLVDEVNQDG 455
>dbj|BAB96555.1| (AB085816) putative fructokinase-like protein [Pseudomonas putida]
Length = 536
Score = 90.1 bits (222), Expect = 4e-17
Identities = 102/411 (24%), Positives = 177/411 (42%), Gaps = 49/411 (11%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLK----DFSTTLEEQEADIIIINSCTVTNGADSAVRSY 58
KV F + GC L D++ + L+ + S T + AD++++N+C + A
Sbjct: 89 KVGFVSLGCPKALVDSEQIITQLRAEGYEISGTYDG--ADLVVVNTCGFIDEAVQESLDA 146
Query: 59 AKKMARLDKEVLFTGC-GVK--TQGKELFEKGFLK--GVFG-HDNKEKINALLQEKKRFF 112
+ + +V+ TGC G K G L E+ K V G H E +NA
Sbjct: 147 IGEALNENGKVIVTGCLGAKKSASGTGLIEEVHPKVLAVTGPHATNEVMNA--------- 197
Query: 113 IDDNLENKHLDTTMVSEFVG-----KTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERK 167
+ +L H T + G + A++KI EGC+ C +CIIPS+RG S
Sbjct: 198 VHAHLPKPHDPFTDLVPAAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVAD 257
Query: 168 ILEQVGLLCSKGVQEVVLTGTNVGSY------------GKDRGSNIARLIKKLSQIAGL- 214
++ + L GV+E+++ + +Y GK + + L+ L ++A
Sbjct: 258 VMLEAENLFKSGVKELLVISQDTSAYGVDVKYRTGFWNGKPVKTRMTDLVGALGELAAQY 317
Query: 215 -KRIRIGSLEPNQINDEFLELLEEDFLEKH----LHIALQHSHDLMLERMNRRNRTKSDR 269
+R+ + P DE + ++ E L+ H L + QH+H +L+RM R +
Sbjct: 318 GAWVRLHYVYPYPSVDEVIPMMAEGALKGHVLPYLDVPFQHAHPEVLKRMKRPANAEKVL 377
Query: 270 ELLETIAS--KNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSS 327
E ++ + I + FI G PGE+ FE + L + F YS + ++
Sbjct: 378 ERVQAWRKICPDLTIRSTFIAGFPGETEEQFETLLDFIRVADLDRVGCFAYSPVEGASAN 437
Query: 328 LMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALV-EVQKDG 377
+ ++ E ++R +L + A +++ K+ LK LV EV DG
Sbjct: 438 ELDGALPDEVREERRARFMELAEELSAA--RMKRKIGKTLKVLVDEVNADG 486
>dbj|BAB26688.1| (AK010081) data source:SPTR, source key:Q9JLH6,
evidence:ISS~homolog to CDK5 ACTIVATOR-BINDING
PROTEIN~putative [Mus musculus]
Length = 351
Score = 89.0 bits (219), Expect = 1e-16
Identities = 60/210 (28%), Positives = 104/210 (48%), Gaps = 20/210 (9%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
+KVY +T+GC+ N+ DT++ L+ + T QEAD+I++ +C++ A+ + +
Sbjct: 99 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 158
Query: 60 KKM---------ARLDKEVLFTGC-GVKTQGKELFEKGFLKGVFGHDNKEKINALL---- 105
++ +R+ + GC + +G+ L + + + G D + LL
Sbjct: 159 HQLKVLKTKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYRDLPRLLAVVE 218
Query: 106 --QEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSF 163
Q+ + +L+ + D V T AF+ I GCD C+YCI+P RGR RS
Sbjct: 219 SGQQAANVLL--SLDETYADIMPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSR 276
Query: 164 EERKILEQVGLLCSKGVQEVVLTGTNVGSY 193
IL++V L +G++EV L G NV S+
Sbjct: 277 PVASILDEVRKLSEQGLKEVTLLGQNVNSF 306
>ref|NP_057492.1| (NM_016408) hypothetical protein HSPC167; hypothetical protein;
CGI-05 protein [Homo sapiens]
gb|AAF29131.1|AF161516_1 (AF161516) HSPC167 [Homo sapiens]
Length = 586
Score = 89.0 bits (219), Expect = 1e-16
Identities = 98/417 (23%), Positives = 171/417 (40%), Gaps = 50/417 (11%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
+KVY +T+GC+ N+ DT++ L+ + T QEAD+I++ +C++ A+ + +
Sbjct: 100 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 159
Query: 60 KKM---------ARLDKEVLFTGCGVKTQGKELFEK----GFLKGVFGHDNKEKINALLQ 106
++ +R+ + GC + +E+ + L G + + +L
Sbjct: 160 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPGCWLMLS 219
Query: 107 EKKRFFIDDNLENKHLDTTMVS-EFVGKTRAFIKIQEGCDFDCNYCIIPSV-RGRARSFE 164
+ +L + + + S + T AF+ I GCD C+YCI+ S GR
Sbjct: 220 RASKLPTCCSLWTRPMLMSCQSRQGASATSAFVSIMRGCDNMCSYCIVLSPGAGRGVGLL 279
Query: 165 ERKILEQVGLLCSKGVQEVVLTGTNVGSY-------------------------GKDRGS 199
+ L G++EV L G NV S+ K G
Sbjct: 280 PHSRGSEEAFLA--GLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTNYKTKQGGL 337
Query: 200 NIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELL-EEDFLEKHLHIALQHSHDLMLER 258
A L+ ++S++ RIR S P DE L+L+ E D + K +H+ Q +LE
Sbjct: 338 RFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEA 397
Query: 259 MNRRNRTKSDRELLETIASK--NFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPF 316
M R ++ EL+ I ++ +DFI G GE+ + L + F
Sbjct: 398 MRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLF 457
Query: 317 IYSKRKDTPS-SLMTDSVSLEDSKKRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
YS R+ T + + D V E +RL + + + +A + Q + LVE
Sbjct: 458 AYSMRQKTRAYHRLKDDVPEEVKLRRLEEL--ITIFREEASKANQTSVGCTQLVLVE 512
>ref|NP_285512.1| (NC_001264) conserved hypothetical protein [Deinococcus
radiodurans]
pir||E75615 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF12186.1|AE001862_12 (AE001862) conserved hypothetical protein [Deinococcus radiodurans]
Length = 504
Score = 84.0 bits (206), Expect = 3e-15
Identities = 84/382 (21%), Positives = 163/382 (41%), Gaps = 48/382 (12%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCT-VTNGADSAVRSY 58
K+V F + GC L D++ + L+ + + AD +I+N+C +T + ++ +
Sbjct: 21 KRVGFISLGCPKALVDSERILTQLRAEGYEVAPSYEGADAVIVNTCGFITPAVEESLSAI 80
Query: 59 AKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQE----------- 107
+ + K V+ TGC + K + + + G + + + ++E
Sbjct: 81 GEALDATGK-VIVTGCLGERPEKIMERHPKVAAITGSEAVDDVMGHVRELLPIDQGAFTG 139
Query: 108 ---------KKRFFIDDNLENKHLDTTMVS-EFVGKTRAFIKIQEGCDFDCNYCIIPSVR 157
+ +H D S + + A++K+ EGC+ C +CIIP +R
Sbjct: 140 LLPVAAPGMRAGVETPQRENTRHGDVFAPSVKLTPRHYAYVKVAEGCNHTCAFCIIPKLR 199
Query: 158 GRARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDR------------GSNIARLI 205
G S + +L + L + G +E+++ + +YG D +++ L
Sbjct: 200 GLQVSRDAGAVLYEAYRLIAGGTKELMIIAQDTSAYGVDLRYRESEFQGEQVRAHLTDLA 259
Query: 206 KKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRT 265
KL ++ +R+ + P D +EL+ + + +L I LQH+ +L+ M R
Sbjct: 260 VKLGEMGAW--VRMHYVYPYPHVDRVVELMAQGKVLPYLDIPLQHASPKILKLMRRPGAG 317
Query: 266 KSDRELLETI-----ASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSK 320
K L+TI I + FIVG PGE+ F++ + LE L + F YS
Sbjct: 318 KQ----LDTIRRWREICPELVIRSTFIVGFPGETEEDFQELLQFLEDARLDRVGAFPYSD 373
Query: 321 RKDTPSSLMTDSVSLEDSKKRL 342
++ ++ + +V E ++RL
Sbjct: 374 IEEADANALPGAVPEEVKQERL 395
>gb|AAH01215.1|AAH01215 (BC001215) Similar to CGI-05 protein [Homo sapiens]
Length = 510
Score = 83.2 bits (204), Expect = 5e-15
Identities = 91/393 (23%), Positives = 157/393 (39%), Gaps = 78/393 (19%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGADSAVRSYA 59
+KVY +T+GC+ N+ DT++ L+ + T QEAD+I++ +C++ A+ + +
Sbjct: 100 RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 159
Query: 60 KKM---------ARLDKEVLFTGCGVKTQGKELFEKGFLKGVF-GHDNKEKINALL---- 105
++ +R+ + GC + +E+ + + + G D + LL
Sbjct: 160 HQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRDLPQLLAVAE 219
Query: 106 --QEKKRFFIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSF 163
Q+ + +L+ + D V T AF+ I GCD C+YCI+P RGR RS
Sbjct: 220 SGQQAANVLL--SLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFTRGRERSR 277
Query: 164 EERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLE 223
ILE+V KKLS
Sbjct: 278 PIASILEEV---------------------------------KKLS-------------- 290
Query: 224 PNQINDEFLELL-EEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASK--NF 280
++ L+L+ E D + K +H+ Q +LE M R ++ EL+ I
Sbjct: 291 -----EQVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGV 345
Query: 281 AIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPS-SLMTDSVSLEDSK 339
++ +DFI G GE+ + L + F YS R+ T + + D V E
Sbjct: 346 SLSSDFIAGFCGETEEDHVQTVSLLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKL 405
Query: 340 KRLNAIKDLIFHKNKAFRQLQLKLNTPLKALVE 372
+RL + + + +A + Q + LVE
Sbjct: 406 RRLEEL--ITIFREEATKANQTSVGCTQLVLVE 436
>ref|NP_541681.1| (NC_003318) Fe-S OXIDOREDUCTASE [Brucella melitensis]
gb|AAL53945.1| (AE009705) Fe-S OXIDOREDUCTASE [Brucella melitensis]
Length = 437
Score = 78.6 bits (192), Expect = 1e-13
Identities = 93/422 (22%), Positives = 178/422 (42%), Gaps = 37/422 (8%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLKD--FSTTLEEQEADIIIINSCTVTNGA-DSAVRSYA 59
+V F + GC L D++ + L+ + + + AD++I+N+C + A D ++ +
Sbjct: 5 RVSFVSLGCPKALVDSERIITGLRSEGYEISRKHDGADLVIVNTCGFLDSARDESLEAIG 64
Query: 60 KKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLEN 119
+ K V+ TGC + + G E + + E D ++
Sbjct: 65 LALNENGK-VIVTGCLGAEPDVIRERHPNVLAITGPQAYESVMNAVHEVAPPAHDPFVD- 122
Query: 120 KHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKG 179
L + + A++KI EGC C++CIIP++RG S ++L + L G
Sbjct: 123 --LVPPQGVKLTPRHYAYLKISEGCSNRCSFCIIPALRGDLVSRPINEVLREAEKLVQAG 180
Query: 180 VQEVVLTGTNVGSYGKD--------RGSNIARLIKKLSQIAGLKR--IRIGSLEPNQIND 229
V+E+++ + +YG D + + LS+ G +R+ + P D
Sbjct: 181 VKEILVISQDTSAYGLDIKYQEAMWQDRTVRTKFLDLSRELGEMGVWVRMHYVYPYPHVD 240
Query: 230 EFLELLEEDFLEKHLHIALQHSHDLMLERMNR-RNRTKSDRELLE-TIASKNFAIGTDFI 287
E + L+ E + +L I QH+ +L+ M R ++ K+ R + + A+ + FI
Sbjct: 241 EVIPLMAEGKILPYLDIPFQHASPAVLKNMRRPAHQEKTSRRIQAWRETCPDLAVRSTFI 300
Query: 288 VGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSSLMTDSVSLEDSKKRLNAIKD 347
VG+PGE+ F+ L+ + F Y K + + + LE + +K+
Sbjct: 301 VGYPGETEEDFQMLLDWLDEAKIERAGCFKYEAVKGAKA----NDLGLEQVPEE---VKE 353
Query: 348 LIFHKNKAFRQ------LQLKLNTPLKALVEVQKDGEFKALDQFFNP-----IKIKSDKP 396
+H+ A +Q L+ K+ L +++ K ++ P + I S +P
Sbjct: 354 ARWHRFMAKQQQISTNLLKKKVGKRLPVIIDEANGTIGKGRTRYDAPEIDGSVHISSRRP 413
Query: 397 LR 398
LR
Sbjct: 414 LR 415
>ref|NP_102288.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB48074.1| (AP002995) hypothetical protein [Mesorhizobium loti]
Length = 437
Score = 78.2 bits (191), Expect = 2e-13
Identities = 94/419 (22%), Positives = 175/419 (41%), Gaps = 29/419 (6%)
Query: 3 KVYFKTFGCRTNLFDTQVMSENLK--DFSTTLEEQEADIIIINSCTVTNGA-DSAVRSYA 59
+V F + GC L D++ + L+ + + AD++++N+C + A D ++ +
Sbjct: 5 RVSFVSLGCPKALVDSERIITRLRAEGYEIARKHDGADLVVVNTCGFLDSARDESLNAIG 64
Query: 60 KKMARLDKEVLFTGCGVKTQGKELFEKG-FLKGVFGHDNKEKINALLQEKKRFFIDDNLE 118
++ + V+ TGC + + + EK + + G E + A + E D ++
Sbjct: 65 SALSE-NGRVIVTGC-LGAEPDVIREKHPNVLAITGPQAYESVMAAVHEAAPPSHDPYID 122
Query: 119 NKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSK 178
L + + A++KI EGC+ C +CIIP++RG S +L + L
Sbjct: 123 ---LLPPQGVKLTPRHYAYLKISEGCNNRCTFCIIPALRGDLVSRPAADVLREAEKLAKA 179
Query: 179 GVQEVVLTGTNVGSYGKD--------RGSNIARLIKKLSQIAGLKRI--RIGSLEPNQIN 228
GV+E+++ + +YG D + LS+ G I R+ + P
Sbjct: 180 GVKELLVISQDTSAYGIDIKYQTSMFGDREVRAKFLDLSEELGKLGIWVRMHYVYPYPHV 239
Query: 229 DEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLE--TIASKNFAIGTDF 286
+ + L+ E + +L I QH+ +L+ M R + E + + AI + F
Sbjct: 240 ADVIPLMAEGKILPYLDIPFQHASPQVLKNMRRPAHGEKTLERIRGWRDVCPDLAIRSTF 299
Query: 287 IVGHPGESGSVFEKAFKNLESLPLTHIHPFIYSKRKDTPSS-LMTDSVSLEDSKKRLNAI 345
IVG PGE+ FE L+ + F Y K S+ L + V + + R +
Sbjct: 300 IVGFPGETDEDFEMLLDWLDEAKIDRAGCFKYEPVKGARSNDLGLEQVPQDVKEARWHRF 359
Query: 346 KDLIFHKNKAFRQLQLKLNTPLKALVEVQKDGEFKALDQFFNP-----IKIKSDKPLRA 399
+ + QL K+ L L++ K ++ P + I+S +P+RA
Sbjct: 360 MQR--QQKISATQLAKKVGKRLPVLIDEAHGTSAKGRTKYDAPEIDGSVHIQSRRPMRA 416
>ref|NP_248493.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
pir||F64485 hypothetical protein MJ1487 - Methanococcus jannaschii
gb|AAB99497.1| (U67589) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 426
Score = 67.4 bits (163), Expect = 3e-10
Identities = 61/256 (23%), Positives = 108/256 (41%), Gaps = 19/256 (7%)
Query: 79 QGKELFEKGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENKHLDTTMVSEFVGKTRAF- 137
+G+E F + F+K V ++ +K+ + FI K +D F K F
Sbjct: 118 EGEETFPE-FIKAVNEDEDYKKVKGIAYLNDNEFIYTG-RRKPVDLNKYPPFPVKHNKFG 175
Query: 138 -IKIQEGCDFDCNYCIIPSVRGRA-RSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGK 195
I+I GC + C +C P + G+ R + I + V ++ + ++++ N YG
Sbjct: 176 HIEITRGCPYKCYFCQTPRIFGKKIRHRDVENIYKYVEIMAERNLKDIRFITPNAFGYGS 235
Query: 196 DRGSN-----IARLIKKLSQIAGLK-RIRIGS----LEPNQINDEFLELLEEDFLEKHLH 245
G I +L++ + +I G RI G+ + P +N E ++L+ K+L
Sbjct: 236 KDGKTLNIDKIEKLLESIREILGNNGRIFFGTFPSEVRPEHVNIETVDLILRYADNKNLV 295
Query: 246 IALQHSHDLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGESGSVFEKAFKNL 305
I Q + +LE +R + + + + DFI G PGE+ EK K +
Sbjct: 296 IGAQSGSEKVLELCHRGHTVEDVYNAVRVARKAGLGVDVDFIFGLPGETEEDVEKTIKVM 355
Query: 306 ESL----PLTHIHPFI 317
+ L H H F+
Sbjct: 356 KDLIKMGAKIHAHTFM 371
>ref|NP_614081.1| (NC_003551) Predicted Fe-S oxidoreductase [Methanopyrus kandleri
AV19]
gb|AAM02011.1| (AE010371) Predicted Fe-S oxidoreductase [Methanopyrus kandleri
AV19]
Length = 435
Score = 65.5 bits (158), Expect = 1e-09
Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 3/178 (1%)
Query: 137 FIKIQEGCDFDCNYCIIPSVRGRARSFEE-RKILEQVGLLCSKGVQEVVLTGTNVGSYGK 195
+I+ GC C +C +P GR ++ +LE+V L G + ++G V +YG
Sbjct: 167 YIETHRGCPGACTFCQVPEFFGRRVRWKPVEAVLEEVRELTRGGARRFAISGGTVTTYGD 226
Query: 196 DRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDFLEKHLHIALQHSHDLM 255
D + L+K+L+ + G + + + + +N+ LE + D+ + + ++ D +
Sbjct: 227 DE-EDFVELLKRLADLLGRENVSAPDVRADLLNERLLEAIR-DYTIGWIFLGIESGSDRI 284
Query: 256 LERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHI 313
L M + E +E + + FIVG+PGE+ E + L L L +
Sbjct: 285 LRAMRKGITVDDVCEAVELARTVGVRVAGSFIVGYPGETEDDLEATEELLTELNLDDV 342
>ref|NP_227997.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||A72408 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD35275.1|AE001703_4 (AE001703) conserved hypothetical protein [Thermotoga maritima]
Length = 397
Score = 63.5 bits (153), Expect = 4e-09
Identities = 64/262 (24%), Positives = 107/262 (40%), Gaps = 20/262 (7%)
Query: 55 VRSYAKKMARLDKEVLFTGCGVKTQGKELFEKGFLKGVFGHDNKEKI-NALLQEKKRFF- 112
VR K + ++ G V + GF VF D +E I L+ E+K+ F
Sbjct: 61 VREEVKTLKERGYTLIAGGPHVTADPEGCLRMGF-DHVFTGDGEENILKFLMGERKKIFD 119
Query: 113 -IDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGR-ARSFEERKILE 170
I + H + S+ + I+I GC F C YC P + GR R + ++
Sbjct: 120 GISKRVNLNHYPPFLPSKGIYMP---IEITRGCPFSCAYCQTPIIAGRRVRHRDVDVVVH 176
Query: 171 QVGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIA-GLKRIRI---------G 220
L G + N YG G + ++K+ ++ GLK++ I
Sbjct: 177 YAKLGVKHGRKLARFIAPNSFGYGSKNG--VTPNVEKIEELLYGLKKVGIEEIYFGTFPS 234
Query: 221 SLEPNQINDEFLELLEEDFLEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASKNF 280
+ P + DE L+++++ + + I Q D +L+ + R + + E +E I+ F
Sbjct: 235 EVRPESVTDEVLKVVKKYVNNRSIVIGAQSGSDRILKIIKRGHTVEQVEEAIEKISLHGF 294
Query: 281 AIGTDFIVGHPGESGSVFEKAF 302
DFI G P E+ EK F
Sbjct: 295 IPHVDFIFGFPFETEEDVEKTF 316
>ref|NP_276299.1| (NC_000916) phosphonoacetaldehyde methylase [Methanothermobacter
thermautotrophicus] [Methanothermobacter
thermautotrophicus str. Delta H]
pir||B69023 conserved hypothetical protein MTH1171 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85660.1| (AE000886) phosphonoacetaldehyde methylase [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 438
Score = 61.6 bits (148), Expect = 2e-08
Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 7/180 (3%)
Query: 137 FIKIQEGCDFDCNYCIIPSVRGR-ARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGK 195
+I+ GC +C +C +P GR RS + I+ +V L S G + ++G YG
Sbjct: 158 YIETHRGCPGNCTFCQVPEFFGRNVRSRPLKDIIMEVRELKSSGARRFAISGGTGTLYGS 217
Query: 196 DRGSNIAR-----LIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDFLEKHLHIALQH 250
+ I L++ +S++ G + + + + + ++ E L+ + E + + ++
Sbjct: 218 SKFRGIDEEAFRDLLRCISEVTGSRNLTVPDIRVDMVSPEILDAISE-YTNGWVFYGIES 276
Query: 251 SHDLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPL 310
ML +M + E +E N + FIVG+PGE +++ + + L L
Sbjct: 277 GSRRMLRKMKKGITPDQVVEAVELAREYNLKVAGSFIVGYPGEDDDDYQETLELADELML 336
>emb|CAA72027.1| (Y11140) homology to M. leprae B2235_C2_195 and H. influenzae
GB:U00019_14 [Bacillus cereus]
Length = 226
Score = 55.1 bits (131), Expect = 2e-06
Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 2 KKVYFKTFGCRTNLFDTQVMSE--NLKDFSTTLEEQEADIIIINSCTVTNGADSAV---R 56
+K Y +T+GC+ N DT+VM+ + T +EAD++++N+C + A++ V
Sbjct: 66 RKFYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGEL 125
Query: 57 SYAKKMARLDKEVLFTGCGVKTQGKELFEKGFLKG-----VFGHDNKEKINALLQE 107
+ K + R + ++L CG +Q + + K K VFG N ++ +L++
Sbjct: 126 GHLKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKD 181
>ref|NP_615215.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM03695.1| (AE010682) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 373
Score = 52.8 bits (125), Expect = 8e-06
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 13/179 (7%)
Query: 133 KTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVLTGTNVGS 192
+ RA I+I GC + C YC P + GR + ++ V L ++ ++ +N +
Sbjct: 140 RLRAPIEISRGCPWGCRYCQTPRLFGRE---VRHRSIDSV-LKNARYYDDLRFIASNAFA 195
Query: 193 YGKD----RGSNIARLIKKLSQIAGLKRIRIGS----LEPNQINDEFLELLEEDFLEKHL 244
YG D R + +L+ L ++ K+I G+ + P + +E +EL+ + L
Sbjct: 196 YGSDGIHPRFDKVEKLLSALHELPD-KKIFFGTFPSEVRPEFVTEESVELVRKYCANDSL 254
Query: 245 HIALQHSHDLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGESGSVFEKAFK 303
+ Q D +L+ + R + + +E A DFI G P E+ EK+ +
Sbjct: 255 SLGAQSGSDRVLKEIRRGHTVEDSISAVECCLEHEIAPAVDFIFGLPTETEEDQEKSLE 313
>ref|NP_579452.1| (NC_003413) hypothetical protein [Pyrococcus furiosus DSM 3638]
gb|AAL81847.1| (AE010270) hypothetical protein [Pyrococcus furiosus DSM 3638]
Length = 425
Score = 52.4 bits (124), Expect = 1e-05
Identities = 47/176 (26%), Positives = 78/176 (43%), Gaps = 15/176 (8%)
Query: 138 IKIQEGCDFDCNYCIIPSVRGRARSFEER-KILEQVGLLCSKGVQEVVLTGTNVGSYGKD 196
++I GC F C YC P +G F R + ++Q+ + SK ++++ N +YG
Sbjct: 169 MEISRGCPFGCYYCQTPYAKG----FRMRHRPIDQI-VKYSKRMKDMRYITPNAFAYGSP 223
Query: 197 RG----SNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFL-----ELLEEDFLEKHLHIA 247
G + L++ L + R P+++ EF+ ELL + K L I
Sbjct: 224 GGILKIEKVEALLRALQPLRREGRRLFYGTFPSEVRPEFVTRETVELLVKYTDTKRLAIG 283
Query: 248 LQHSHDLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGESGSVFEKAFK 303
Q D ML+ M+R +R + +E DFIVG PGE+ + K+ +
Sbjct: 284 AQSGDDKMLKAMHRVHRVEHVINAVELSLEYGITPVVDFIVGLPGETEEMQRKSIE 339
>ref|NP_247860.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
sp|Q58275|Y865_METJA Hypothetical protein MJ0865
pir||A64408 conserved hypothetical protein MJ0865 - Methanococcus jannaschii
gb|AAB98870.1| (U67530) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 449
Score = 52.0 bits (123), Expect = 1e-05
Identities = 30/162 (18%), Positives = 75/162 (45%), Gaps = 5/162 (3%)
Query: 137 FIKIQEGCDFDCNYCIIPSVRGRA-RSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGK 195
+I+ GC +C +C +P G+ RS + ++E+V G + + ++G Y
Sbjct: 170 YIETHRGCLGNCTFCQVPKFFGKTIRSRDVEDVVEEVKAFKRAGAKRIAISGGTGSLYAF 229
Query: 196 DRGSN---IARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDFLEKHLHIALQHSH 252
+ N L++K+S++ G + + + + +++E LE + +++ + ++
Sbjct: 230 KKSINRDKFFELLEKVSEVIGKNNLSVPDMRVDYVDEEILEAI-KNYTIGWVFYGIESGS 288
Query: 253 DLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGES 294
D +L+ M + + + + ++ + FIV +P E+
Sbjct: 289 DKILKDMKKGTNREKNLDAIKLAKDCGVKVAGSFIVAYPTET 330
>ref|NP_633546.1| (NC_003901) Fe-S oxidoreductase [Methanosarcina mazei Goe1]
gb|AAM31218.1| (AE013386) Fe-S oxidoreductase [Methanosarcina mazei Goe1]
Length = 374
Score = 51.6 bits (122), Expect = 2e-05
Identities = 44/179 (24%), Positives = 77/179 (42%), Gaps = 13/179 (7%)
Query: 133 KTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVLTGTNVGS 192
K RA I+I GC + C YC P + GR E R L ++ ++ +N +
Sbjct: 141 KLRAPIEISRGCPWGCKYCQTPRLFGR----EVRHRSIDSILKNAQHYNDLRFIASNAFA 196
Query: 193 YGKD----RGSNIARLIKKLSQIAGLKRIRIGS----LEPNQINDEFLELLEEDFLEKHL 244
YG D R + +L+ L ++ K+I G+ + P + +E +EL+ + L
Sbjct: 197 YGSDGIHPRFDKVEKLLSALHKLPD-KKIFFGTFPSEVRPEFVTEESVELVRKYCANDSL 255
Query: 245 HIALQHSHDLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGESGSVFEKAFK 303
+ Q D +L+ + R + + +E + DFI G P E+ EK+ +
Sbjct: 256 SLGAQSGSDRILKEIRRGHTVEDSISAVECCLEHDIMPAVDFIFGLPTETEEDQEKSLE 314
>ref|NP_622643.1| (NC_003869) Fe-S oxidoreductases family 2 [Thermoanaerobacter
tengcongensis]
gb|AAM24247.1| (AE013064) Fe-S oxidoreductases family 2 [Thermoanaerobacter
tengcongensis]
Length = 562
Score = 50.8 bits (120), Expect = 3e-05
Identities = 54/249 (21%), Positives = 105/249 (41%), Gaps = 14/249 (5%)
Query: 81 KELFE----KGFLKGVFGHDNKEKINALLQEKKRFFIDDNLENKHLDTTMVSEFVGKTRA 136
KEL E K LK V G K + ++Q +K + D + + + +S+ +
Sbjct: 118 KELLEALEGKKDLKEVPGIGYKVEEEIVIQPQKYYVNLDEVPIGYDEEEDLSDKL----V 173
Query: 137 FIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKD 196
+ + GC F C YC+ S+ R K+ + + +K V+ + L + + K
Sbjct: 174 YYETSRGCPFKCAYCL-SSIDNVLRYESLEKVEKDLKWFANKNVKILKLVDRSFNANRK- 231
Query: 197 RGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDFLEKHLHIALQHSHDLML 256
R I ++K++ + + + P +N+EF+ LE+ + +Q ++ + L
Sbjct: 232 RAREILSIMKRIEG----EMVFHCEVNPELVNEEFISELEDLKGRIQFEVGVQTTNKVTL 287
Query: 257 ERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGESGSVFEKAFKNLESLPLTHIHPF 316
+++R + + +E + + D I G P +S F KAF ++ +L I
Sbjct: 288 RKISRTTAVEMALKGIELLKKAGIKLHVDLIAGLPEDSLKTFSKAFDDVYNLKPEEIQLG 347
Query: 317 IYSKRKDTP 325
K TP
Sbjct: 348 FLKILKGTP 356
>ref|NP_248630.1| (NC_000909) conserved hypothetical protein [Methanococcus
jannaschii] [Methanocaldococcus jannaschii]
pir||C64502 hypothetical protein MJ1620 - Methanococcus jannaschii
gb|AAB99641.1| (U67602) conserved hypothetical protein [Methanococcus jannaschii]
[Methanocaldococcus jannaschii]
Length = 505
Score = 50.1 bits (118), Expect = 5e-05
Identities = 64/260 (24%), Positives = 107/260 (40%), Gaps = 32/260 (12%)
Query: 148 CNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGKDRG--------- 198
C +C +PSV G ARS +E IL++V L +GV +VL+ + Y +
Sbjct: 216 CGFCSVPSVFGYARSRDEEDILKEVEALLKEGVNRIVLSAPDFLDYKRGEKLINPYFPEP 275
Query: 199 --SNIARLIKKLSQIAGL--KRIRIGSLEPNQINDEFLELLEEDFLEKHLHIALQHSHDL 254
I L+ K +A + I +++ N N++ E+ + +L+ ++I + S D
Sbjct: 276 NYEAIESLLSKCKDLADKYNANVLIENIKANLFNEKVAEIFSK-YLKTPIYIGCE-SGDK 333
Query: 255 MLERMNRRNRTKSDRELLETIASK-NFAIGTDFIVGHPGESGSV------FEKAFKN-LE 306
++ R T D IA K N FI G PGE+ F KN ++
Sbjct: 334 NHCKLLGRPTTPDDVLKAVKIAKKYNLKAQVYFIYGLPGENEETAKNTVNFMHKIKNYID 393
Query: 307 SLPLTHIHPFIYS-----KRKDTPSSLM----TDSVSLEDSKKRLNAIKDLIFHKNKAFR 357
+ + P S K T SL+ + ++LE KK + + ++I +
Sbjct: 394 KITVYKFRPLPMSAFQNFKPNITKYSLLIRETANKINLEIKKKYIGRVLEVIISERHFRN 453
Query: 358 QLQLKLNTPLKALVEVQKDG 377
+ P L+ V KDG
Sbjct: 454 KRDAIGYLPDSGLMVVVKDG 473
>ref|NP_562561.1| (NC_003366) Mg-protoporphyrin IX monomethyl ester oxidative cyclase
[Clostridium perfringens]
dbj|BAB81351.1| (AP003191) Mg-protoporphyrin IX monomethyl ester oxidative cyclase
[Clostridium perfringens]
Length = 559
Score = 49.3 bits (116), Expect = 8e-05
Identities = 67/322 (20%), Positives = 135/322 (41%), Gaps = 52/322 (16%)
Query: 21 MSENLKDFSTTLEEQEADIIIINSCTVTNGADSAVRSYAKKMARLDK------EVLFTGC 74
+++ +++ + E++ D++ SC + N + ++A L K E+L+ G
Sbjct: 40 INDRVENILEGIIEEKPDVVAF-SCYIWN------MEFVNRLAELIKLVDPNIEILYGGP 92
Query: 75 GVKTQGKELFE-------------KGFLKGVFGHDNKEKINAL--LQEKKRFFIDDNLEN 119
V +GKE E K F + V + KI + L K+ + +N +
Sbjct: 93 EVSYEGKEFLENHEGEYVIVGEGEKTFREFVLYKLGEGKIEDIKGLNYKRDGKVFENPKR 152
Query: 120 KHLDTTMV------SEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVG 173
+D + E + + + GC F C YC+ + G R + ++ +++
Sbjct: 153 PEMDMNELVFPYTYEEDINNKIVYYEASRGCPFKCKYCLSSVMHG-VRFLDVERVKKELK 211
Query: 174 LLCSKGVQEVVLTGTNVGSYGKDRGSNIAR-----LIKKLSQIAGLKRIRIGSLEPNQIN 228
+G++ V DR N R L+K LS+ R + + +
Sbjct: 212 YFMERGLKLVKFV---------DRTFNCNREYTVELLKYLSEQDTETRFHF-EVAADLLT 261
Query: 229 DEFLELLEEDFLEK-HLHIALQHSHDLMLERMNRRNRTKSDRELLETIAS-KNFAIGTDF 286
+E +E+L + L + +Q +++ +L +NR ++ +E + +AS KN D
Sbjct: 262 EEQIEILNNAPKGRFQLEVGVQTTNNEVLHNINRYITYENIKEKVLKVASGKNVMQHLDL 321
Query: 287 IVGHPGESGSVFEKAFKNLESL 308
I G PGE F+K+F ++ ++
Sbjct: 322 IAGLPGEDLESFKKSFNDVHAI 343
>ref|NP_614072.1| (NC_003551) Fe-S oxidoreductase family protein [Methanopyrus
kandleri AV19]
gb|AAM02002.1| (AE010370) Fe-S oxidoreductase family protein [Methanopyrus
kandleri AV19]
Length = 402
Score = 47.4 bits (111), Expect = 3e-04
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 138 IKIQEGCDFDCNYCIIPSVRG---RARSFEE-----RKILEQVGLLCSKGVQEVVLTGTN 189
++I GC + C +C + + G R RS E+ R+ +E+ G ++ V L
Sbjct: 155 VEITRGCPWGCAFCQVTRLFGPKLRHRSVEDVVRWVRRGVERYGHTFARFVAPDAL---- 210
Query: 190 VGSYGKDRG-----SNIARLIKKLSQIAGLKRIRIGS----LEPNQI-NDEFLELLEEDF 239
+YG G + RL++ L I GL+++ GS L P+ I + +EL+
Sbjct: 211 --AYGSPDGIRLKPDRVKRLLRSLRSIEGLEKVFFGSFPAELRPDSIAKGDAIELIAHYA 268
Query: 240 LEKHLHIALQHSHDLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGES 294
+ ++I Q + +L+R+ R + + +E DFI G PGE+
Sbjct: 269 DNERVNIGAQSGSERVLKRIERGHTVEDVEVAVEKALEVGLKPVVDFIFGLPGET 323
>ref|NP_126164.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||D75164 hypothetical protein PAB0314 - Pyrococcus abyssi (strain Orsay)
emb|CAB49395.1| (AJ248284) hypothetical protein [Pyrococcus abyssi]
Length = 425
Score = 47.0 bits (110), Expect = 4e-04
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 138 IKIQEGCDFDCNYCIIPSVRGRARSFEER-KILEQVGLLCSKGVQEVVLTGTNVGSYGKD 196
++I GC F C YC P +G F R + ++Q+ + S+ ++++ N +YG
Sbjct: 169 MEISRGCPFGCYYCQTPYAKG----FRMRHRPIDQI-VKYSRRMKDMRYITPNAFAYGSP 223
Query: 197 RG----SNIARLIKKLSQIAGLKRIRIGSLEPNQINDEF-----LELLEEDFLEKHLHIA 247
G + L++ L + R P+++ EF +ELL + + L I
Sbjct: 224 GGILKIEKVEALLRALQPLRKEGRRLFYGTFPSEVRPEFVTRETIELLVDYTDTRRLAIG 283
Query: 248 LQHSHDLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGES 294
Q D ML+ M+R ++ + +E DFIVG P E+
Sbjct: 284 AQSGDDAMLKAMHRVHKVEHVVNAVELALEYGLTPVVDFIVGLPNET 330
>ref|NP_614215.1| (NC_003551) Fe-S oxidoreductase family protein [Methanopyrus
kandleri AV19]
gb|AAM02145.1| (AE010383) Fe-S oxidoreductase family protein [Methanopyrus
kandleri AV19]
Length = 523
Score = 46.6 bits (109), Expect = 5e-04
Identities = 49/225 (21%), Positives = 93/225 (40%), Gaps = 25/225 (11%)
Query: 142 EGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEVVLTGTNVGSYGK------ 195
EG C +C +PS+ G RS +++ +V L +G++ VVL+ ++V YG+
Sbjct: 214 EGIPPGCGFCSVPSIFGPTRSRPLNEVVREVRGLVREGIRRVVLSASDVLDYGRGDLLTD 273
Query: 196 -----DRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDFLEKHLHIALQH 250
+ RL+++ S+ + + + +++ +N E ELL E + + ++
Sbjct: 274 PRTPPPNVEALRRLLRRTSKHVDV--LFVENVKACLLNREIAELLGEYCRGTSVSVGVET 331
Query: 251 SHDLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGE---SGSVFEKAFK---- 303
+L + + + K + + F+ G PG+ S + KA K
Sbjct: 332 GDPRLLRAIGKPSTLKEALRAIRLLRRAGLRPHAYFVYGLPGQTMKSAKLTAKAMKRAVE 391
Query: 304 -NLESLPLTHIHPFIYSKRKDTP--SSLMTDSVS--LEDSKKRLN 343
E + + P S D P S D S + D+ +RLN
Sbjct: 392 MGAEKITVYRFRPIPASAFGDFPPGPSPRNDEASRLIADTARRLN 436
>ref|NP_347657.1| (NC_003030) Predicted Fe-S oxidoreductases [Clostridium
acetobutylicum]
gb|AAK78997.1|AE007617_9 (AE007617) Predicted Fe-S oxidoreductases [Clostridium
acetobutylicum]
Length = 548
Score = 46.6 bits (109), Expect = 5e-04
Identities = 58/247 (23%), Positives = 110/247 (44%), Gaps = 25/247 (10%)
Query: 76 VKTQGKELFEKGFLKGVF--GHDNKE-KI--------NALLQEKKRFFIDDNL-ENKHLD 123
++ +G+E F K FLK G D K+ KI N +L +R +D NL E + +
Sbjct: 112 IEGEGEESF-KEFLKWKLENGFDRKDLKIKGVYSKCQNQILYGGQREALDMNLLEFPYNE 170
Query: 124 TTMVSEFVGKTRAFIKIQEGCDFDCNYCIIPSVRGRARSFEERKILEQVGLLCSKGVQEV 183
+S + + + GC F+C YC+ ++RG R ++ ++ L K V+ V
Sbjct: 171 EDDLSNKI----IYYEASRGCPFNCKYCLSSTIRG-VRFLNPDRVKRELKFLADKKVKIV 225
Query: 184 VLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGSLEPNQINDEFLELLEEDFLEK- 242
+ K A I K + + + + + ++ +ELL+ +
Sbjct: 226 KFVDRTFNANPK-----FAMEIWKYLMELDTETVFHFEITADIVTEDEIELLKNAPKGRF 280
Query: 243 HLHIALQHSHDLMLERMNRRNRTKSDRELLETI-ASKNFAIGTDFIVGHPGESGSVFEKA 301
+ +Q +++ +L+ +NR K +E++ + KN D IVG PGE + F+ +
Sbjct: 281 QFEVGVQSTNNEVLKNVNRYIEFKDIKEIVMKLEEGKNINQHLDLIVGLPGEDFNSFKNS 340
Query: 302 FKNLESL 308
F ++ S+
Sbjct: 341 FNDVYSI 347
>ref|NP_143544.1| (NC_000961) hypothetical protein [Pyrococcus horikoshii]
pir||G71177 hypothetical protein PH1701 - Pyrococcus horikoshii
Length = 428
Score = 45.8 bits (107), Expect = 0.001
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 15/176 (8%)
Query: 138 IKIQEGCDFDCNYCIIPSVRGRARSFEER-KILEQVGLLCSKGVQEVVLTGTNVGSYGKD 196
++I GC F C YC P +G F R + ++Q+ + S+ ++++ N +YG
Sbjct: 172 MEISRGCPFGCYYCQTPYAKG----FRMRHRPIDQI-VKYSRRMKDMRYITPNAFAYGSP 226
Query: 197 RG----SNIARLIKKLSQIAGLKRIRIGSLEPNQINDEF-----LELLEEDFLEKHLHIA 247
G + L++ L + R P+++ +F LELL + K + I
Sbjct: 227 GGILKVEKVEALLRALQPLRKEGRRLFYGTFPSEVRPDFVTRETLELLVKYTDTKRIAIG 286
Query: 248 LQHSHDLMLERMNRRNRTKSDRELLETIASKNFAIGTDFIVGHPGESGSVFEKAFK 303
Q + ML+ M+R ++ + +E DFIVG P ES +K+ +
Sbjct: 287 AQSGDNAMLKAMHRLHKVEHVINAVELSLEYGLEPVVDFIVGLPNESPESQKKSIE 342
>ref|NP_232289.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||G82047 conserved hypothetical protein VC2661 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF95802.1| (AE004332) conserved hypothetical protein [Vibrio cholerae]
Length = 340
Score = 43.1 bits (100), Expect = 0.006
Identities = 34/142 (23%), Positives = 68/142 (46%), Gaps = 12/142 (8%)
Query: 133 KTRAFIKIQEGCDFDCNYCI---IPSVRGRARSFEERKILEQVGLLCSKGVQEVVLTGTN 189
K R + ++ GC +C YC P + ++ L+ + + + EV+ +G
Sbjct: 109 KNRCLLIVKGGCAINCRYCFRRHFPYEDNKGGKSAWQQSLDYIAQ--NPQLNEVIFSG-- 164
Query: 190 VGSYGKDRGSNIARLIKKLSQIAGLKRIRIGS----LEPNQINDEFLELLEEDFLEKHLH 245
G + IA L+++++ I +KR+RI S + P +I DE +EL + L+ L
Sbjct: 165 -GDPLMAKDHEIAWLMERIAAIPHIKRLRIHSRLPVVIPARITDELVELFAQTRLQVLLV 223
Query: 246 IALQHSHDLMLERMNRRNRTKS 267
+ H++++ LE + R ++
Sbjct: 224 THINHANEINLELKQQMARLRA 245
>ref|NP_438493.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44641|YJEK_HAEIN Hypothetical protein HI0329
pir||B64148 hypothetical protein HI0329 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC21990.1| (U32717) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 338
Score = 42.7 bits (99), Expect = 0.008
Identities = 45/196 (22%), Positives = 79/196 (39%), Gaps = 29/196 (14%)
Query: 112 FIDDNLENKHLDTTMVSEFVGKTRAFIKIQEGCDFDCNYCI---IPSVRGRARSFEERKI 168
F D LE K+ + + R + GC +C YC P +
Sbjct: 89 FSTDPLEEKNANAVPNILHKYRNRLLFMAKGGCAVNCRYCFRRHFPYDENPGNKKSWQLA 148
Query: 169 LEQVGLLCSKGVQEVVLTGTNVGSYGKDRGSNIARLIKKLSQIAGLKRIRIGS----LEP 224
L+ + ++EV+ +G G + +A LIK L I L+R+RI + + P
Sbjct: 149 LDYIA--AHSEIEEVIFSG---GDPLMAKDHELAWLIKHLENIPHLQRLRIHTRLPVVIP 203
Query: 225 NQINDEFLELLEEDFLEKHLHIALQHSHDL------MLERMNRRNRT-----------KS 267
+I DEF LL E L+ + + H +++ ++++N N T
Sbjct: 204 QRITDEFCTLLAETRLQTVMVTHINHPNEIDQIFAHAMQKLNAVNVTLLNQSVLLKGVND 263
Query: 268 DRELLETIASKNFAIG 283
D ++L+ ++ K F G
Sbjct: 264 DAQILKILSDKLFQTG 279
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.137 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 250,600,732
Number of Sequences: 1026957
Number of extensions: 10417416
Number of successful extensions: 31685
Number of sequences better than 1.0e-02: 169
Number of HSP's better than 0.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 31018
Number of HSP's gapped (non-prelim): 179
length of query: 418
length of database: 324,149,939
effective HSP length: 124
effective length of query: 294
effective length of database: 196,807,271
effective search space: 57861337674
effective search space used: 57861337674
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 99 (42.7 bits)