BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644915|ref|NP_207085.1| hypothetical protein
[Helicobacter pylori 26695]
         (172 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207085.1|  (NC_000915) hypothetical protein [Helicoba...   342  1e-93
ref|NP_222993.1|  (NC_000921) putative [Helicobacter pylori ...   327  3e-89

>ref|NP_207085.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64555 hypothetical protein HP0287 - Helicobacter pylori (strain 26695)
 gb|AAD07359.1| (AE000547) H. pylori predicted coding region HP0287 [Helicobacter
           pylori 26695]
          Length = 172

 Score =  342 bits (877), Expect = 1e-93
 Identities = 172/172 (100%), Positives = 172/172 (100%)

Query: 1   MRFFSGFGFVNESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNEILQQRRINSLLLFSPC 60
           MRFFSGFGFVNESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNEILQQRRINSLLLFSPC
Sbjct: 1   MRFFSGFGFVNESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNEILQQRRINSLLLFSPC 60

Query: 61  MLAHKSLAFKRLQLSSFQKDPQSYMDNFYQEVGLSAQLERFKKEGSLEELEFLLNYKYSD 120
           MLAHKSLAFKRLQLSSFQKDPQSYMDNFYQEVGLSAQLERFKKEGSLEELEFLLNYKYSD
Sbjct: 61  MLAHKSLAFKRLQLSSFQKDPQSYMDNFYQEVGLSAQLERFKKEGSLEELEFLLNYKYSD 120

Query: 121 SIIRLLLEKGVKIEVFIGLKDKITDIQALLEFFMPLVQVWQFKDCNHLLQKS 172
           SIIRLLLEKGVKIEVFIGLKDKITDIQALLEFFMPLVQVWQFKDCNHLLQKS
Sbjct: 121 SIIRLLLEKGVKIEVFIGLKDKITDIQALLEFFMPLVQVWQFKDCNHLLQKS 172



>ref|NP_222993.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71953 hypothetical protein jhp0272 - Helicobacter pylori (strain J99)
 gb|AAD05853.1| (AE001464) putative [Helicobacter pylori J99]
          Length = 172

 Score =  327 bits (839), Expect = 3e-89
 Identities = 163/172 (94%), Positives = 168/172 (96%)

Query: 1   MRFFSGFGFVNESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNEILQQRRINSLLLFSPC 60
           MRFFSGFGFVNESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNE+LQQRRI+SLLLFSPC
Sbjct: 1   MRFFSGFGFVNESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNEVLQQRRIHSLLLFSPC 60

Query: 61  MLAHKSLAFKRLQLSSFQKDPQSYMDNFYQEVGLSAQLERFKKEGSLEELEFLLNYKYSD 120
           MLAHKSLAFKRLQL  FQKDPQSYMDNFY+EVGL AQLERFKKEGSLEELEFLL+YKYSD
Sbjct: 61  MLAHKSLAFKRLQLFLFQKDPQSYMDNFYKEVGLDAQLERFKKEGSLEELEFLLDYKYSD 120

Query: 121 SIIRLLLEKGVKIEVFIGLKDKITDIQALLEFFMPLVQVWQFKDCNHLLQKS 172
           SIIR LLEKGVKIEVFIGLKD+ITDIQALLEFFMPLVQVWQFKDCNHLLQKS
Sbjct: 121 SIIRFLLEKGVKIEVFIGLKDRITDIQALLEFFMPLVQVWQFKDCNHLLQKS 172



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.325    0.141    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,676,384
Number of Sequences: 1026957
Number of extensions: 3638591
Number of successful extensions: 12691
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12689
Number of HSP's gapped (non-prelim): 2
length of query: 172
length of database: 324,149,939
effective HSP length: 113
effective length of query: 59
effective length of database: 208,103,798
effective search space: 12278124082
effective search space used: 12278124082
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 93 (40.4 bits)