BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644916|ref|NP_207086.1| hypothetical protein
[Helicobacter pylori 26695]
         (157 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207086.1|  (NC_000915) hypothetical protein [Helicoba...   307  3e-83
ref|NP_222994.1|  (NC_000921) putative [Helicobacter pylori ...   298  2e-80
ref|NP_281893.1|  (NC_002163) putative integral membrane pro...    85  3e-16

>ref|NP_207086.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64555 hypothetical protein HP0288 - Helicobacter pylori (strain 26695)
 gb|AAD07360.1| (AE000547) H. pylori predicted coding region HP0288 [Helicobacter
           pylori 26695]
          Length = 157

 Score =  307 bits (786), Expect = 3e-83
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MKKFGLGVYLLLLGILGGSLIILGAIVAPIVFKASSVLPELHLTPFESGKLMAQIFVRFN 60
           MKKFGLGVYLLLLGILGGSLIILGAIVAPIVFKASSVLPELHLTPFESGKLMAQIFVRFN
Sbjct: 1   MKKFGLGVYLLLLGILGGSLIILGAIVAPIVFKASSVLPELHLTPFESGKLMAQIFVRFN 60

Query: 61  YVLGAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCLLFVFYYTPYILNAQKAGEAAL 120
           YVLGAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCLLFVFYYTPYILNAQKAGEAAL
Sbjct: 61  YVLGAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCLLFVFYYTPYILNAQKAGEAAL 120

Query: 121 QSAEFARSHAQSEWLFKELFVLVCALFFWRLLGKNVL 157
           QSAEFARSHAQSEWLFKELFVLVCALFFWRLLGKNVL
Sbjct: 121 QSAEFARSHAQSEWLFKELFVLVCALFFWRLLGKNVL 157



>ref|NP_222994.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71953 hypothetical protein jhp0273 - Helicobacter pylori (strain J99)
 gb|AAD05854.1| (AE001464) putative [Helicobacter pylori J99]
          Length = 157

 Score =  298 bits (762), Expect = 2e-80
 Identities = 151/157 (96%), Positives = 153/157 (97%)

Query: 1   MKKFGLGVYLLLLGILGGSLIILGAIVAPIVFKASSVLPELHLTPFESGKLMAQIFVRFN 60
           MKKFGLGVYLLLLGILGGSLIILGAIVAPIVFKASS+LPEL+LTPFESGKLMAQIFVRFN
Sbjct: 1   MKKFGLGVYLLLLGILGGSLIILGAIVAPIVFKASSILPELNLTPFESGKLMAQIFVRFN 60

Query: 61  YVLGAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCLLFVFYYTPYILNAQKAGEAAL 120
           YVLGAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCLLFVFYYTPYILNAQK GE AL
Sbjct: 61  YVLGAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCLLFVFYYTPYILNAQKVGEVAL 120

Query: 121 QSAEFARSHAQSEWLFKELFVLVCALFFWRLLGKNVL 157
           QSAEFARSHAQSEWLFKELFVLVCALFFWRL GKN L
Sbjct: 121 QSAEFARSHAQSEWLFKELFVLVCALFFWRLFGKNAL 157



>ref|NP_281893.1| (NC_002163) putative integral membrane protein [Campylobacter
           jejuni]
 pir||D81343 probable integral membrane protein Cj0721c [imported] -
           Campylobacter jejuni (strain NCTC 11168)
 emb|CAB72995.1| (AL139076) putative integral membrane protein [Campylobacter
           jejuni]
          Length = 156

 Score = 84.7 bits (208), Expect = 3e-16
 Identities = 52/145 (35%), Positives = 80/145 (54%), Gaps = 4/145 (2%)

Query: 8   VYLLLLGILGGSLIILGAIVAPIVFKASSVLPELHLTPFESGKLMAQIFVRFNYVLGAIG 67
           V L LL  + G  +ILG +VAP +F   +++ E  L+ F+SG +M QIF++  Y+L  + 
Sbjct: 4   VNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFQSGLMMTQIFIKMGYLLIFVS 63

Query: 68  FVVLLYEIISFI----YYKRSLVYLILGVAIGALCLLFVFYYTPYILNAQKAGEAALQSA 123
            V  LYEI S I     ++      +L + I  L L+FVFY+T  I+  Q  GE A ++ 
Sbjct: 64  VVNFLYEIYSLIKDEMKFQIKFSKFMLSLLILILSLIFVFYFTNTIIELQNLGENATKTQ 123

Query: 124 EFARSHAQSEWLFKELFVLVCALFF 148
           EF   H  SE + K + ++   L+F
Sbjct: 124 EFISIHNASEVVIKIILIMQVFLYF 148



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.333    0.149    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,338,447
Number of Sequences: 1026957
Number of extensions: 3475217
Number of successful extensions: 14273
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14269
Number of HSP's gapped (non-prelim): 3
length of query: 157
length of database: 324,149,939
effective HSP length: 111
effective length of query: 46
effective length of database: 210,157,712
effective search space: 9667254752
effective search space used: 9667254752
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 92 (40.0 bits)