BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644919|ref|NP_207089.1| hypothetical protein
[Helicobacter pylori 26695]
(96 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207089.1| (NC_000915) hypothetical protein [Helicoba... 187 2e-47
ref|NP_222997.1| (NC_000921) putative [Helicobacter pylori ... 168 1e-41
ref|NP_281507.1| (NC_002163) chorismate mutase\prephenate d... 55 2e-07
ref|NP_372261.1| (NC_002758) chorismate mutase homolog [Sta... 53 8e-07
gb|AAK19833.1| (AF013585) chorismate mutase-like protein [S... 51 2e-06
ref|NP_579430.1| (NC_003413) chorismate mutase [Pyrococcus ... 49 1e-05
ref|NP_519025.1| (NC_003295) PROBABLE BIFUNCTIONAL PROTEIN:... 48 2e-05
ref|NP_213648.1| (NC_000918) chorismate mutase/prephenate d... 46 7e-05
ref|NP_439442.1| (NC_000907) chorismate mutase / prephenate... 45 1e-04
ref|NP_347533.1| (NC_003030) Fusion: chorismate mutase and ... 45 2e-04
ref|NP_345760.1| (NC_003028) chorismate mutase, putative [S... 44 4e-04
ref|NP_245601.1| (NC_002663) TyrA [Pasteurella multocida] >... 42 0.001
ref|NP_602958.1| (NC_003454) Shikimate 5-dehydrogenase [Fus... 42 0.001
ref|NP_273493.1| (NC_003112) chorismate mutase/prephenate d... 42 0.002
gb|AAF08824.1|AF194079_11 (AF194079) PheA [Neisseria mening... 42 0.002
gb|AAD05425.1| (AF047375) PheA [Neisseria gonorrhoeae] 42 0.002
ref|NP_284741.1| (NC_003116) chorismate mutase [Neisseria m... 42 0.002
sp|Q9ZHY3|PHEA_NEIGO P-protein [Includes: Chorismate mutase... 42 0.002
ref|NP_470977.1| (NC_003212) 3-deoxy-D-arabino-heptulosonat... 42 0.002
sp|P27603|PHEA_PSEST P-protein [Includes: Chorismate mutase... 41 0.002
ref|NP_230354.1| (NC_002505) chorismate mutase/prephenate d... 41 0.002
pir||A44764 chorismate mutase (EC 5.4.99.5) / prephenate de... 41 0.002
sp|Q02287|TYRA_ERWHE T-protein [Includes: Chorismate mutase... 41 0.003
ref|NP_465125.1| (NC_003210) 3-deoxy-D-arabino-heptulosonat... 40 0.004
ref|NP_656826.1| (NC_003995) DAHP_synth_1, DAHP synthetase ... 40 0.005
ref|NP_268354.1| (NC_002662) conserved hypothetical protein... 40 0.007
ref|NP_251856.1| (NC_002516) chorismate mutase [Pseudomonas... 40 0.007
ref|NP_457139.1| (NC_003198) chorismate mutase/prephenate d... 39 0.009
ref|NP_299604.1| (NC_002488) P-protein [Xylella fastidiosa ... 39 0.009
ref|NP_614892.1| (NC_003551) Chorismate mutase [Methanopyru... 39 0.009
>ref|NP_207089.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64556 hypothetical protein HP0291 - Helicobacter pylori (strain 26695)
gb|AAD07361.1| (AE000547) H. pylori predicted coding region HP0291 [Helicobacter
pylori 26695]
Length = 96
Score = 187 bits (476), Expect = 2e-47
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MQKNLDSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKRLS 60
MQKNLDSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKRLS
Sbjct: 1 MQKNLDSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKRLS 60
Query: 61 QRDFKHLNGEILTGFYTEVFKISRKFQENALKELKK 96
QRDFKHLNGEILTGFYTEVFKISRKFQENALKELKK
Sbjct: 61 QRDFKHLNGEILTGFYTEVFKISRKFQENALKELKK 96
>ref|NP_222997.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71950 hypothetical protein jhp0276 - Helicobacter pylori (strain J99)
gb|AAD05867.1| (AE001465) putative [Helicobacter pylori J99]
Length = 100
Score = 168 bits (426), Expect = 1e-41
Identities = 90/100 (90%), Positives = 90/100 (90%), Gaps = 4/100 (4%)
Query: 1 MQKNLDSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESP----IYCPKREQEIL 56
MQKNLDSLLENLRAEIDALDNELSDLLDKRL IALKIALIKQESP IYCPKREQEIL
Sbjct: 1 MQKNLDSLLENLRAEIDALDNELSDLLDKRLGIALKIALIKQESPQENPIYCPKREQEIL 60
Query: 57 KRLSQRDFKHLNGEILTGFYTEVFKISRKFQENALKELKK 96
KRLSQR FKHLNGEIL FY EVFKISR FQENALKELKK
Sbjct: 61 KRLSQRGFKHLNGEILASFYAEVFKISRNFQENALKELKK 100
>ref|NP_281507.1| (NC_002163) chorismate mutase\prephenate dehydratase
[Campylobacter jejuni]
pir||H81450 chorismate mutase (EC 5.4.99.5) / prephenate dehydratase (EC
4.2.1.51) Cj0316 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72783.1| (AL139074) chorismate mutase\prephenate dehydratase
[Campylobacter jejuni]
Length = 357
Score = 54.7 bits (130), Expect = 2e-07
Identities = 29/81 (35%), Positives = 47/81 (57%), Gaps = 2/81 (2%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQES--PIYCPKREQEILKRLSQRDFKH 66
LE R +IDA+D+++ DLL++R+ I +KQ S IY P+RE+ I+ RL +
Sbjct: 4 LEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIYRPERERAIINRLKNANLGL 63
Query: 67 LNGEILTGFYTEVFKISRKFQ 87
L+ + Y E+F +SR +
Sbjct: 64 LDQNAIEAIYQEIFAVSRNLE 84
>ref|NP_372261.1| (NC_002758) chorismate mutase homolog [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374847.1| (NC_002745) chorismate mutase homolog [Staphylococcus aureus
subsp. aureus N315]
ref|NP_646497.1| (NC_003923) ORFID:MW1680~chorismate mutase homolog
[Staphylococcus aureus subsp. aureus MW2]
dbj|BAB42826.1| (AP003134) ORFID:SA1558~chorismate mutase homolog [Staphylococcus
aureus subsp. aureus N315]
dbj|BAB57899.1| (AP003363) chorismate mutase homolog [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB95545.1| (AP004827) ORFID:MW1680~chorismate mutase homolog [Staphylococcus
aureus subsp. aureus MW2]
Length = 363
Score = 52.8 bits (125), Expect = 8e-07
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 5 LDSLLENLRAEIDALDNELSDLLDKRLEIALKIA--LIKQESPIYCPKREQEILKRLSQR 62
+ + LE+ R+EI +L++++ DLL KR E+A KI +KQ + IY P+RE+E+L L
Sbjct: 1 MSNKLESYRSEIVSLNHQILDLLSKRGELAQKIGEEKLKQGTRIYDPQREKEMLNDLIDS 60
Query: 63 DFKHLNGEILTGFYTEVFKISRKFQEN 89
+ N + + E+FK S Q++
Sbjct: 61 NKGPFNDNTIKQLFKEIFKASTDLQKS 87
>gb|AAK19833.1| (AF013585) chorismate mutase-like protein [Streptococcus
thermophilus]
Length = 90
Score = 51.2 bits (121), Expect = 2e-06
Identities = 26/87 (29%), Positives = 50/87 (56%), Gaps = 2/87 (2%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQES--PIYCPKREQEILKRLSQRDFKH 66
L +R ID++DNE+ LL++R+++ +++ KQ + IY P+REQ +L ++
Sbjct: 3 LNEIRQHIDSVDNEIVALLEERMKLVTRVSAYKQRTGKAIYDPEREQALLDKVGASVLNP 62
Query: 67 LNGEILTGFYTEVFKISRKFQENALKE 93
E + + ++ K SR +Q + L+E
Sbjct: 63 EYKEAIVASFADIMKHSRTYQASKLEE 89
>ref|NP_579430.1| (NC_003413) chorismate mutase [Pyrococcus furiosus DSM 3638]
gb|AAL81825.1| (AE010268) chorismate mutase [Pyrococcus furiosus DSM 3638]
Length = 76
Score = 48.9 bits (115), Expect = 1e-05
Identities = 31/66 (46%), Positives = 43/66 (64%), Gaps = 4/66 (6%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQE--SPIYCPKREQEILKRLSQRDFKH 66
L+ LR EID +DN++ LL KRLEIA I IK+E PI KRE+E+L+R +F+
Sbjct: 4 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVLRRAG--EFRE 61
Query: 67 LNGEIL 72
+ +IL
Sbjct: 62 IFEKIL 67
>ref|NP_519025.1| (NC_003295) PROBABLE BIFUNCTIONAL PROTEIN: CHORISMATE MUTASE AND
PREPHENATE DEHYDRATASE [Ralstonia solanacearum]
emb|CAD14606.1| (AL646061) PROBABLE BIFUNCTIONAL PROTEIN: CHORISMATE MUTASE AND
PREPHENATE DEHYDRATASE [Ralstonia solanacearum]
Length = 371
Score = 48.1 bits (113), Expect = 2e-05
Identities = 25/82 (30%), Positives = 47/82 (56%), Gaps = 2/82 (2%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQE--SPIYCPKREQEILKRLSQRDFKH 66
L LRA+IDA+D++L LL R ++A + +K+ SP + P RE ++++++ +
Sbjct: 20 LAPLRAQIDAIDSQLLTLLSDRAKVAQAVGEVKKHYASPAFRPDRELQVIRKMQSGNPGP 79
Query: 67 LNGEILTGFYTEVFKISRKFQE 88
L+GE + + EV R ++
Sbjct: 80 LHGESIAAIWREVMSACRGLEQ 101
>ref|NP_213648.1| (NC_000918) chorismate mutase/prephenate dehydratase [Aquifex
aeolicus]
sp|O67085|PHEA_AQUAE P-protein [Includes: Chorismate mutase (CM); Prephenate
dehydratase (PDT)]
pir||B70382 chorismate mutase/prephenate dehydratase - Aquifex aeolicus
gb|AAC07041.1| (AE000715) chorismate mutase/prephenate dehydratase [Aquifex
aeolicus]
Length = 362
Score = 46.2 bits (108), Expect = 7e-05
Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 7/72 (9%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQES--PIYCPKREQEILKRLSQRDFKH 66
L+ LR EID +D E+ LL++R ++A +I IK ++ PI+ P+RE+EI +++ +
Sbjct: 4 LKELRKEIDRIDEEILRLLNERAKLAKRIGEIKSKANLPIHVPEREREIFEKILR----- 58
Query: 67 LNGEILTGFYTE 78
LN E+ G + +
Sbjct: 59 LNKEVYGGVFPQ 70
>ref|NP_439442.1| (NC_000907) chorismate mutase / prephenate dehydrogenase (tyrA)
[Haemophilus influenzae Rd]
sp|P43902|TYRA_HAEIN T-protein [Includes: Chorismate mutase (CM); Prephenate
dehydrogenase (PDH)]
pir||H64114 chorismate mutase (EC 5.4.99.5) T / prephenate dehydrogenase (EC
1.3.1.12) - Haemophilus influenzae (strain Rd KW20)
gb|AAC22939.1| (U32809) chorismate mutase / prephenate dehydrogenase (tyrA)
[Haemophilus influenzae Rd]
Length = 377
Score = 45.4 bits (106), Expect = 1e-04
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQES--PIYCPKREQEILK 57
L++LR+EID+LD EL L KRLE+ ++ +K + PIY P+RE +L+
Sbjct: 7 LKDLRSEIDSLDRELIQLFAKRLELVSQVGKVKHQHGLPIYAPEREIAMLQ 57
>ref|NP_347533.1| (NC_003030) Fusion: chorismate mutase and shikimate
5-dehydrogenase [Clostridium acetobutylicum]
gb|AAK78873.1|AE007605_6 (AE007605) Fusion: chorismate mutase and shikimate
5-dehydrogenase [Clostridium acetobutylicum]
Length = 367
Score = 45.1 bits (105), Expect = 2e-04
Identities = 24/94 (25%), Positives = 53/94 (55%), Gaps = 10/94 (10%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQES--PIYCPKREQEILKR----LSQR 62
LE +R EID +D +++L +KR+ + +++A K+++ P+ KRE++++ + L +
Sbjct: 4 LEEIRKEIDEVDKIITELFEKRMNLVMEVAEYKEKNSIPVSDSKREKKVIDKNIGYLKNK 63
Query: 63 DFKHLNGEILTGFYTEVFKISRKFQENALKELKK 96
++ E+L FY +S+K + + +K
Sbjct: 64 EY----SEVLKEFYINFMNLSKKLERKRIYNEEK 93
>ref|NP_345760.1| (NC_003028) chorismate mutase, putative [Streptococcus pneumoniae
TIGR4]
ref|NP_358767.1| (NC_003098) Strong similarity to chorismate mutase; prephenate
dehydratase [Streptococcus pneumoniae R6]
gb|AAK75400.1| (AE007428) chorismate mutase, putative [Streptococcus pneumoniae
TIGR4]
gb|AAK99977.1| (AE008489) Strong similarity to chorismate mutase; prephenate
dehydratase [Streptococcus pneumoniae R6]
Length = 88
Score = 43.9 bits (102), Expect = 4e-04
Identities = 24/86 (27%), Positives = 48/86 (54%), Gaps = 2/86 (2%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQES--PIYCPKREQEILKRLSQRDFKH 66
L+ +R EID +D+++ LL++R+ + + K+ S PI KRE+ I +++ R
Sbjct: 3 LDIIRQEIDQIDDQIVKLLEERMHLVEGVVAYKKASGKPILDTKREEVIFEKVRSRVEDK 62
Query: 67 LNGEILTGFYTEVFKISRKFQENALK 92
E + ++++ K SR +Q+ +K
Sbjct: 63 RYQETIVATFSDILKRSRDYQDQNIK 88
>ref|NP_245601.1| (NC_002663) TyrA [Pasteurella multocida]
gb|AAK02748.1| (AE006103) TyrA [Pasteurella multocida]
Length = 374
Score = 42.4 bits (98), Expect = 0.001
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQES--PIYCPKREQEIL 56
L LR +ID +D +L LL +RLE+ ++ +K + PIY P+RE E+L
Sbjct: 4 LNKLRTQIDQVDRQLLQLLAQRLELVKQVGEVKHQQGLPIYVPEREAEML 53
>ref|NP_602958.1| (NC_003454) Shikimate 5-dehydrogenase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gb|AAL94257.1| (AE010519) Shikimate 5-dehydrogenase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 86
Score = 42.4 bits (98), Expect = 0.001
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQES--PIYCPKREQEIL 56
LE +R +ID +D++L L +RLE++ KI L+K+++ I+ P+REQEI+
Sbjct: 5 LELMRKKIDEIDDKLLVLFKERLEVSKKIGLLKKKNKIEIFDPQREQEII 54
>ref|NP_273493.1| (NC_003112) chorismate mutase/prephenate dehydratase [Neisseria
meningitidis MC58]
pir||H81196 chorismate mutase/prephenate dehydratase NMB0446 [imported] -
Neisseria meningitidis (group B strain MD58)
gb|AAF40883.1| (AE002401) chorismate mutase/prephenate dehydratase [Neisseria
meningitidis MC58]
Length = 362
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 1 MQKNLDSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKRLS 60
M + +D LL R ID +D E+ LL++R + A I +K +Y P+RE +L+R+
Sbjct: 1 MSQTIDELLLPHRNAIDTIDAEILRLLNERAQHAHAIGELKGTGAVYRPEREVAVLRRIQ 60
Query: 61 QRDFKHLNGEILTGFYTEV 79
+ L E + + EV
Sbjct: 61 DLNKGPLPDESVARLFREV 79
>gb|AAF08824.1|AF194079_11 (AF194079) PheA [Neisseria meningitidis]
Length = 375
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 1 MQKNLDSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKRLS 60
M + +D LL R ID +D E+ LL++R + A I +K +Y P+RE +L+R+
Sbjct: 14 MSQTIDELLLPHRNAIDTIDAEILRLLNERAQHAHAIGELKGTGAVYRPEREVAVLRRIQ 73
Query: 61 QRDFKHLNGEILTGFYTEV 79
+ L E + + EV
Sbjct: 74 DLNKGPLPDESVARLFREV 92
>gb|AAD05425.1| (AF047375) PheA [Neisseria gonorrhoeae]
Length = 375
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 1 MQKNLDSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKRLS 60
M + +D LL R ID +D E+ LL++R + A I +K +Y P+RE +L+R+
Sbjct: 14 MSQTIDELLIPHRNAIDTIDAEILRLLNERAQHAHAIGELKGTGAVYRPEREVAVLRRIQ 73
Query: 61 QRDFKHLNGEILTGFYTEV 79
+ L E + + EV
Sbjct: 74 DLNKGPLPDESVARLFREV 92
>ref|NP_284741.1| (NC_003116) chorismate mutase [Neisseria meningitidis Z2491]
pir||B81834 chorismate mutase (EC 5.4.99.5) NMA2039 [imported] - Neisseria
meningitidis (group A strain Z2491)
gb|AAF06690.1|AF163663_15 (AF058689) putative chorismate mutase/prephenate dehydratase PheA
[Neisseria meningitidis]
emb|CAB85258.1| (AL162757) chorismate mutase [Neisseria meningitidis Z2491]
Length = 375
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 1 MQKNLDSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKRLS 60
M + +D LL R ID +D E+ LL++R + A I +K +Y P+RE +L+R+
Sbjct: 14 MSQTIDELLLPHRNAIDTIDAEILRLLNERAQHAHAIGELKGTGAVYRPEREVAVLRRIQ 73
Query: 61 QRDFKHLNGEILTGFYTEV 79
+ L E + + EV
Sbjct: 74 DLNKGPLPDESVARLFREV 92
>sp|Q9ZHY3|PHEA_NEIGO P-protein [Includes: Chorismate mutase (CM); Prephenate
dehydratase (PDT)]
Length = 362
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 1 MQKNLDSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKRLS 60
M + +D LL R ID +D E+ LL++R + A I +K +Y P+RE +L+R+
Sbjct: 1 MSQTIDELLIPHRNAIDTIDAEILRLLNERAQHAHAIGELKGTGAVYRPEREVAVLRRIQ 60
Query: 61 QRDFKHLNGEILTGFYTEV 79
+ L E + + EV
Sbjct: 61 DLNKGPLPDESVARLFREV 79
>ref|NP_470977.1| (NC_003212) 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
[Listeria innocua]
emb|CAC96872.1| (AL596169) 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
[Listeria innocua]
Length = 361
Score = 41.6 bits (96), Expect = 0.002
Identities = 26/82 (31%), Positives = 42/82 (50%), Gaps = 2/82 (2%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIK--QESPIYCPKREQEILKRLSQRDFKH 66
LE LR E+D L+ +L +L+ KR + +I IK Q S + P RE+E+L + +
Sbjct: 6 LEELRTEVDQLNIDLLELISKRANLVQEIGKIKGTQGSLRFDPLREREMLNTILAANKGP 65
Query: 67 LNGEILTGFYTEVFKISRKFQE 88
+ + E+FK + QE
Sbjct: 66 FEDSTVQKLFKEIFKAGLELQE 87
>sp|P27603|PHEA_PSEST P-protein [Includes: Chorismate mutase (CM); Prephenate
dehydratase (PDT)]
gb|AAD47360.1|AF038578_3 (AF038578) chorismate mutase/prephenate dehydratase [Pseudomonas
stutzeri]
Length = 365
Score = 41.2 bits (95), Expect = 0.002
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIK-------QESPIYCPKREQEILKRLSQ 61
L+ LR ID+LD + DL+ +R A ++A +K +E+ Y P+RE +LK + +
Sbjct: 7 LKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKHIME 66
Query: 62 RDFKHLNGEILTGFYTEV 79
+ L+ E + + E+
Sbjct: 67 LNKGPLDNEEMARLFREI 84
>ref|NP_230354.1| (NC_002505) chorismate mutase/prephenate dehydratase [Vibrio
cholerae]
pir||C82291 chorismate mutase/prephenate dehydratase VC0705 [imported] -
Vibrio cholerae (group O1 strain N16961)
gb|AAF93870.1| (AE004156) chorismate mutase/prephenate dehydratase [Vibrio
cholerae]
Length = 391
Score = 41.2 bits (95), Expect = 0.002
Identities = 24/90 (26%), Positives = 56/90 (61%), Gaps = 4/90 (4%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQES--PIYCPKREQEILKRL--SQRDF 64
L+++R ++ LD++L +LL +R ++++++A K E+ P+ P REQ++L +L + ++
Sbjct: 8 LDDIRLRLNELDDQLLNLLSERRKMSIEVAKSKVETAKPVRDPAREQQLLVKLINAGKEK 67
Query: 65 KHLNGEILTGFYTEVFKISRKFQENALKEL 94
L+ + +T + + + S Q++ L+ L
Sbjct: 68 YQLDPQYITKIFHTIIEDSVLLQQSYLQNL 97
>pir||A44764 chorismate mutase (EC 5.4.99.5) / prephenate dehydratase (EC
4.2.1.51) - Pseudomonas stutzeri
Length = 365
Score = 41.2 bits (95), Expect = 0.002
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIK-------QESPIYCPKREQEILKRLSQ 61
L+ LR ID+LD + DL+ +R A ++A +K +E+ Y P+RE +LK + +
Sbjct: 7 LKALRVRIDSLDERILDLISERARCAQEVARVKTASWPKAEEAVFYRPEREAWVLKHIME 66
Query: 62 RDFKHLNGEILTGFYTEV 79
+ L+ E + + E+
Sbjct: 67 LNKGPLDNEEMARLFREI 84
>sp|Q02287|TYRA_ERWHE T-protein [Includes: Chorismate mutase (CM); Prephenate
dehydrogenase (PDH)]
pir||S29934 chorismate mutase (EC 5.4.99.5) T / prephenate dehydrogenase (EC
1.3.1.12) - Erwinia herbicola
emb|CAA42950.1| (X60420) prephenate dehydrogenase; chorismate mutase [Pantoea
agglomerans]
Length = 373
Score = 40.8 bits (94), Expect = 0.003
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQE--SPIYCPKREQEIL 56
L LR +ID++D L DLL KRLE+ ++ +K PIY P+RE +L
Sbjct: 5 LTALRDQIDSVDKALLDLLAKRLELVAEVGEVKSRYGLPIYVPEREASML 54
>ref|NP_465125.1| (NC_003210) 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
[Listeria monocytogenes EGD-e]
emb|CAC99678.1| (AL591979) 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
[Listeria monocytogenes]
Length = 361
Score = 40.4 bits (93), Expect = 0.004
Identities = 25/82 (30%), Positives = 42/82 (50%), Gaps = 2/82 (2%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIK--QESPIYCPKREQEILKRLSQRDFKH 66
LE LR ++D L+ +L +L+ KR + +I IK Q S + P RE+E+L + +
Sbjct: 6 LEELRTQVDQLNIDLLELISKRANLVQEIGKIKGTQGSLRFDPLREREMLNTILAANEGP 65
Query: 67 LNGEILTGFYTEVFKISRKFQE 88
+ + E+FK + QE
Sbjct: 66 FEDSTVQKLFKEIFKAGLELQE 87
>ref|NP_656826.1| (NC_003995) DAHP_synth_1, DAHP synthetase I family [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 358
Score = 40.0 bits (92), Expect = 0.005
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIK--QESPIYCPKREQEILKRLSQRDFKH 66
L+ LR ++D ++ +L LL+KR EI KI K Q + + P RE+E+L +++ +
Sbjct: 6 LDQLRKQVDEINLQLLHLLNKRGEIVQKIGEQKQVQGTKRFDPVREREVLDMIAENNEGP 65
Query: 67 LNGEILTGFYTEVFKISRKFQEN 89
+ + +FK S + QE+
Sbjct: 66 FETSTVQHIFKTIFKASLELQED 88
>ref|NP_268354.1| (NC_002662) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
gb|AAK06295.1|AE006449_1 (AE006449) conserved hypothetical protein [Lactococcus lactis
subsp. lactis]
Length = 90
Score = 39.7 bits (91), Expect = 0.007
Identities = 27/81 (33%), Positives = 39/81 (47%), Gaps = 2/81 (2%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYC--PKREQEILKRLSQRDFKH 66
LE LR ID +D E+ LL+KR+ I +I+ KQ I REQ +L Q
Sbjct: 4 LEELRNNIDQVDQEIVQLLEKRMTIVQEISQEKQAQKITILDNSREQAVLDLARQNIKNS 63
Query: 67 LNGEILTGFYTEVFKISRKFQ 87
E + + ++ K SR +Q
Sbjct: 64 AYQETIINTFKDIMKNSRLYQ 84
>ref|NP_251856.1| (NC_002516) chorismate mutase [Pseudomonas aeruginosa]
pir||G83250 chorismate mutase PA3166 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG06554.1|AE004740_7 (AE004740) chorismate mutase [Pseudomonas aeruginosa]
Length = 365
Score = 39.7 bits (91), Expect = 0.007
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQ------ESPI-YCPKREQEILKRLSQ 61
L+ LR ID+LD +L +L+ +R A +A +K E+P+ Y P+RE +LK + Q
Sbjct: 7 LKALRLRIDSLDEKLLELISERARCAQDVARVKTQTLGEGEAPVFYRPEREAWVLKHIMQ 66
Query: 62 RDFKHLNGEILTGFYTEV 79
+ L+ E + + E+
Sbjct: 67 LNKGPLDNEEVARLFREI 84
>ref|NP_457139.1| (NC_003198) chorismate mutase/prephenate dehydrogenase
[Salmonella enterica subsp. enterica serovar Typhi]
ref|NP_461599.1| (NC_003197) bifunctional: chorismate mutase T; prephenate
dehydrogenase [Salmonella typhimurium LT2]
gb|AAL21558.1| (AE008821) bifunctional: chorismate mutase T; prephenate
dehydrogenase [Salmonella typhimurium LT2]
emb|CAD05848.1| (AL627276) chorismate mutase/prephenate dehydrogenase [Salmonella
enterica subsp. enterica serovar Typhi]
Length = 373
Score = 39.3 bits (90), Expect = 0.009
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 9 LENLRAEIDALDNELSDLLDKRLEIALKIALIKQE--SPIYCPKREQEIL 56
L LR +ID +D L +LL KRLE+ K+ +K PIY P+RE +L
Sbjct: 5 LTALRDQIDDVDKALLNLLAKRLELVAKVGEVKSRFGLPIYVPEREASML 54
>ref|NP_299604.1| (NC_002488) P-protein [Xylella fastidiosa 9a5c]
pir||B82572 P-protein XF2325 [imported] - Xylella fastidiosa (strain 9a5c)
gb|AAF85124.1|AE004043_8 (AE004043) P-protein [Xylella fastidiosa 9a5c]
Length = 374
Score = 39.3 bits (90), Expect = 0.009
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 6 DSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQE----SPIYCPKREQEILKRLSQ 61
D+ L ++R +ID +D ++ L+ +R A ++ K + Y P+RE ++L+ + +
Sbjct: 16 DTALADIRTKIDKIDRDIQTLIAERACYAQQVGQAKSKLAAAMDYYRPEREAQVLRMVVE 75
Query: 62 RDFKHLNGEILTGFYTEVFKISRKFQE 88
R+ L+ E+L + E+ QE
Sbjct: 76 RNEGPLSDEVLVRLFREIMSACLAQQE 102
>ref|NP_614892.1| (NC_003551) Chorismate mutase [Methanopyrus kandleri AV19]
gb|AAM02822.1| (AE010450) Chorismate mutase [Methanopyrus kandleri AV19]
Length = 92
Score = 39.3 bits (90), Expect = 0.009
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 7 SLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQES--PIYCPKREQEILKRLSQR-D 63
++LE LR EID +D L D + +RL++A +I +K + P+ +RE+E+ +R +R
Sbjct: 2 NVLEELRREIDRIDECLLDAVIERLKVAREIGRVKAQEGLPLTDEEREKELRERWRKRFK 61
Query: 64 FKHLNGEILTGFYTEVFKISRKFQENAL 91
+ L+ + + K+S++ Q +
Sbjct: 62 TEGLDPALADIVLASILKVSKEVQRGVI 89
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.137 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,021,718
Number of Sequences: 1026957
Number of extensions: 1834495
Number of successful extensions: 7731
Number of sequences better than 1.0e-02: 30
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 7711
Number of HSP's gapped (non-prelim): 30
length of query: 96
length of database: 324,149,939
effective HSP length: 72
effective length of query: 24
effective length of database: 250,209,035
effective search space: 6005016840
effective search space used: 6005016840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 90 (39.3 bits)