BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644920|ref|NP_207090.1| hypothetical protein
[Helicobacter pylori 26695]
(290 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207090.1| (NC_000915) hypothetical protein [Helicoba... 579 e-164
ref|NP_222998.1| (NC_000921) putative [Helicobacter pylori ... 560 e-159
ref|NP_603184.1| (NC_003454) Hypothetical protein [Fusobact... 186 3e-46
ref|NP_632205.1| (NC_003901) conserved protein [Methanosarc... 132 3e-30
ref|NP_616717.1| (NC_003552) conserved hypothetical protein... 131 1e-29
ref|NP_078414.1| (NC_002162) conserved hypothetical [Ureapl... 44 0.002
>ref|NP_207090.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64556 hypothetical protein HP0292 - Helicobacter pylori (strain 26695)
gb|AAD07362.1| (AE000547) H. pylori predicted coding region HP0292 [Helicobacter
pylori 26695]
Length = 290
Score = 579 bits (1493), Expect = e-164
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 1 MFEKITLAHKDLFSRFLSAQKIVLSDVSFTNCFLWQHARLIQVAVIRDCLVIQTTYENQK 60
MFEKITLAHKDLFSRFLSAQKIVLSDVSFTNCFLWQHARLIQVAVIRDCLVIQTTYENQK
Sbjct: 1 MFEKITLAHKDLFSRFLSAQKIVLSDVSFTNCFLWQHARLIQVAVIRDCLVIQTTYENQK 60
Query: 61 PFYFYPIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYS 120
PFYFYPIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYS
Sbjct: 61 PFYFYPIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYS 120
Query: 121 IEELIALKGKKYHKKKNHLNQFLTNHANFVYEKISPQNKKEVLEASQAWFLESQTDDIGL 180
IEELIALKGKKYHKKKNHLNQFLTNHANFVYEKISPQNKKEVLEASQAWFLESQTDDIGL
Sbjct: 121 IEELIALKGKKYHKKKNHLNQFLTNHANFVYEKISPQNKKEVLEASQAWFLESQTDDIGL 180
Query: 181 INENKGIQSVLENYESLDVKGGLIRVNGEIASFSFGEVLNEESALIHIEKARTDIAGAYQ 240
INENKGIQSVLENYESLDVKGGLIRVNGEIASFSFGEVLNEESALIHIEKARTDIAGAYQ
Sbjct: 181 INENKGIQSVLENYESLDVKGGLIRVNGEIASFSFGEVLNEESALIHIEKARTDIAGAYQ 240
Query: 241 IINQQLLLNEFSHLTYANREEDLGLEGLRRSKMSYNPVFLIDKYEAVAKN 290
IINQQLLLNEFSHLTYANREEDLGLEGLRRSKMSYNPVFLIDKYEAVAKN
Sbjct: 241 IINQQLLLNEFSHLTYANREEDLGLEGLRRSKMSYNPVFLIDKYEAVAKN 290
>ref|NP_222998.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71950 hypothetical protein jhp0277 - Helicobacter pylori (strain J99)
gb|AAD05868.1| (AE001465) putative [Helicobacter pylori J99]
Length = 290
Score = 560 bits (1442), Expect = e-159
Identities = 278/290 (95%), Positives = 284/290 (97%)
Query: 1 MFEKITLAHKDLFSRFLSAQKIVLSDVSFTNCFLWQHARLIQVAVIRDCLVIQTTYENQK 60
MFE+ITLAHKDLFSRFL QKIVLSDVSFTNCFLWQHARLIQVAVIRDCLVIQTTYENQK
Sbjct: 1 MFEEITLAHKDLFSRFLQTQKIVLSDVSFTNCFLWQHARLIQVAVIRDCLVIQTTYENQK 60
Query: 61 PFYFYPIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYS 120
PFYFYPIGK ECVKELL+LEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYS
Sbjct: 61 PFYFYPIGKRPHECVKELLELEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDRSDYVYS 120
Query: 121 IEELIALKGKKYHKKKNHLNQFLTNHANFVYEKISPQNKKEVLEASQAWFLESQTDDIGL 180
IEELIALKGKKYHKKKNHLNQFLTNHANFVYEKISPQN+KEVLEAS+AWFLESQTDDIGL
Sbjct: 121 IEELIALKGKKYHKKKNHLNQFLTNHANFVYEKISPQNRKEVLEASKAWFLESQTDDIGL 180
Query: 181 INENKGIQSVLENYESLDVKGGLIRVNGEIASFSFGEVLNEESALIHIEKARTDIAGAYQ 240
INENKGIQSVLENYESLD+KGGLIRVNGEI SFSFGEVLNEESALIHIEKARTDIAGAYQ
Sbjct: 181 INENKGIQSVLENYESLDLKGGLIRVNGEIVSFSFGEVLNEESALIHIEKARTDIAGAYQ 240
Query: 241 IINQQLLLNEFSHLTYANREEDLGLEGLRRSKMSYNPVFLIDKYEAVAKN 290
IINQQLLLNEFSHLTYANREEDLGLEGLRRSKMSYNPVFLIDKYEAVA+N
Sbjct: 241 IINQQLLLNEFSHLTYANREEDLGLEGLRRSKMSYNPVFLIDKYEAVARN 290
>ref|NP_603184.1| (NC_003454) Hypothetical protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gb|AAL94483.1| (AE010540) Hypothetical protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 290
Score = 186 bits (472), Expect = 3e-46
Identities = 109/297 (36%), Positives = 169/297 (56%), Gaps = 15/297 (5%)
Query: 1 MFEKITLAHKDLFSRFLSAQKIVLSDVSFTNCFLWQHARLIQVAVIRDCLVIQTTYENQK 60
M++K+T+ K + + + + D+SF+N LW + + D L I++ Y
Sbjct: 1 MWQKLTIESKSSIEEY-TKNRFEICDLSFSNLLLWSIGENTEYEIENDVLTIRSVYMGDV 59
Query: 61 PFYFYPIGKNA----FECVKELLK--LEKNLRFHSLTLEQKDDLKDNFVGVFDFTYNRDR 114
+Y+ PI KN E +KE ++ L++N+ H T + LKD+F + RD
Sbjct: 60 -YYYMPIPKNDTPKNIEKMKEKIREILKENVAIHYFTEYWYEKLKDDF----NLQEKRDY 114
Query: 115 SDYVYSIEELIALKGKKYHKKKNHLNQFLTNHANFVYEKISPQNKKEVLEASQAWF-LES 173
DY+YS E L LKG+ Y KKKN ++ F ++ F YE IS N EV+ + W+ + S
Sbjct: 115 EDYIYSYESLSTLKGRHYAKKKNRVSNFKKSY-QFSYESISKDNINEVVAFQKKWYEIHS 173
Query: 174 QTDDIGLINENKGIQSVLENYESLDVKGGLIRVNGEIASFSFGEVLNEESALIHIEKART 233
++ + L NEN+GI ++L+NYE L +KGG ++VN ++ ++S GE L ++ L+H EKA
Sbjct: 174 ESSEEILKNENEGILNLLKNYEKLGLKGGFLKVNNQVIAYSLGEALTDKMILVHTEKALI 233
Query: 234 DIAGAYQIINQQLLLNEFSHLTYANREEDLGLEGLRRSKMSYNPVFLIDKYEAVAKN 290
D G+YQ IN L E+ NRE+D G EGLR +KMSY P++L KY ++ KN
Sbjct: 234 DYIGSYQAINMIYLQKEWQGYELVNREDDFGDEGLREAKMSYKPLYLQKKY-SIEKN 289
>ref|NP_632205.1| (NC_003901) conserved protein [Methanosarcina mazei Goe1]
gb|AAM29877.1| (AE013242) conserved protein [Methanosarcina mazei Goe1]
Length = 324
Score = 132 bits (333), Expect = 3e-30
Identities = 88/287 (30%), Positives = 144/287 (49%), Gaps = 6/287 (2%)
Query: 2 FEKITLAHKDLFSRFLSAQKIVLSDVSFTNCFLWQHARLIQVAVIRDCLVIQTTYENQKP 61
F+ +TLA ++ F R S +FTN W H + A + ++I T
Sbjct: 7 FKPVTLADREFFERHSELYPQTHSSNTFTNMVCWNHFTQYRYAYVNGNIIISGTTGGITR 66
Query: 62 FYFYPIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLK---DNFVGVFDFTYNRDRSDYV 118
F+ PIG E ++EL++L + ++ + D + +RD +YV
Sbjct: 67 FH-PPIGPRDPELMRELIQLAMKVSDNTPLIFIDPDTALWIRELEPDLELVPDRDNFEYV 125
Query: 119 YSIEELIALKGKKYHKKKNHLNQFLTNHANFVYEKISPQNKKEVLEASQAWFLESQTDDI 178
Y +L L GKKY K ++HLN+F N + V E I+P+N +EV+E + W D
Sbjct: 126 YRASDLAELPGKKYQKIRSHLNRFRRNCMSTV-EPITPENLEEVMELLKKWRDWKGCDKN 184
Query: 179 GLIN-ENKGIQSVLENYESLDVKGGLIRVNGEIASFSFGEVLNEESALIHIEKARTDIAG 237
+++ E + +E++ L ++G L+RV+ E+ + S E LN ++ALIH EK D G
Sbjct: 185 PVLSHEVEAAFYAVEHFMELRLRGFLLRVDSEVGAISIFERLNADTALIHFEKGLPDCEG 244
Query: 238 AYQIINQQLLLNEFSHLTYANREEDLGLEGLRRSKMSYNPVFLIDKY 284
Y+ IN + + Y NRE DLG+ GLR +K+ Y+P +++ Y
Sbjct: 245 IYKAINAETAAALADEVEYINRESDLGVGGLREAKLRYHPHHMVEVY 291
>ref|NP_616717.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM05197.1| (AE010858) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 313
Score = 131 bits (329), Expect = 1e-29
Identities = 90/294 (30%), Positives = 150/294 (50%), Gaps = 8/294 (2%)
Query: 2 FEKITLAHKDLFSRFLSAQKIVLSDVSFTNCFLWQHARLIQVAVIRDCLVIQTTYENQKP 61
F+ + L+ + F + S +FTN W H + A + ++I T E
Sbjct: 8 FKPVMLSDRAFFESHYAFFPQTHSSNTFTNMVCWNHFTPYRYAYVNGNVIISCTTEGVTR 67
Query: 62 FYFYPIGKNAFECVKELLKLEKNLRFHSLTLEQKDDLKDNFVGVFD----FTYNRDRSDY 117
F+ PIG E ++EL++L ++ + +E D ++ D +R+ +Y
Sbjct: 68 FH-PPIGPRNPELMRELIRLALDVSDET-PIELIDPDTAQWLQELDPELALMPDRNNFEY 125
Query: 118 VYSIEELIALKGKKYHKKKNHLNQFLTNHANFVYEKISPQNKKEVLEASQAWF-LESQTD 176
VY +L L GKKY K ++HLN+F N ++ V E ++P N KEV++ + W +
Sbjct: 126 VYRASDLAELPGKKYQKIRSHLNRFRKNCSSTV-EPVTPGNLKEVIKFLKKWSEWKGCRK 184
Query: 177 DIGLINENKGIQSVLENYESLDVKGGLIRVNGEIASFSFGEVLNEESALIHIEKARTDIA 236
++ L +E + +E++ L ++G LIRV+ EI + + E LN ++ALIH EK D
Sbjct: 185 NLVLASEVGAARYAVEHFNELPLQGLLIRVDSEIGAITLYERLNTDTALIHFEKGLPDCE 244
Query: 237 GAYQIINQQLLLNEFSHLTYANREEDLGLEGLRRSKMSYNPVFLIDKYEAVAKN 290
G Y+ IN++ S + Y NRE DLG+ GLR +K+ Y+P +I+ Y N
Sbjct: 245 GIYKAINEETAAVLVSEVEYINRESDLGVGGLREAKLRYHPHHMIEVYSLKRPN 298
>ref|NP_078414.1| (NC_002162) conserved hypothetical [Ureaplasma urealyticum]
pir||C82873 conserved hypothetical UU575 [imported] - Ureaplasma urealyticum
gb|AAF30989.1|AE002156_4 (AE002156) conserved hypothetical [Ureaplasma urealyticum]
Length = 317
Score = 43.9 bits (102), Expect = 0.002
Identities = 46/186 (24%), Positives = 88/186 (46%), Gaps = 20/186 (10%)
Query: 115 SDYVYSIEELIALKGKKYHKKKNHLNQFLTNHAN-FVYEKISPQ-NKKEVLEASQAW--- 169
S+++Y + L GK KK+N+LN F+ N N + K +P+ + EV + W
Sbjct: 140 SNFIYETQSLKYFCGKILQKKRNNLNFFIKNFKNDYEIIKYNPKFHLHEVCTFLKEWDVK 199
Query: 170 -FLESQTDDIGLINENKGI----QSVLENYESLDVKGGLIRVNGEIASFSFGEVLNEESA 224
F+ S+ L+N N + Q+ SL +K + ++ G ++ + A
Sbjct: 200 NFINSKR---MLVNSNSDLLLNTQTNPYFMGSLLIKKSINKIVGFTLVYTRPNI-----A 251
Query: 225 LIHIEKARTDIAGAYQ-IINQQLLLNEFSHLTYANREEDLGLEGLRRSKMSYNPVFLIDK 283
I IE+ +I G YQ +++Q L++N ++ +R++ + + SK+SY P + +
Sbjct: 252 EILIEQTDREIRGMYQYLLSQNLIINNINN-WLIDRQDGAWSDNISASKLSYAPKIITKR 310
Query: 284 YEAVAK 289
+ K
Sbjct: 311 VNVLIK 316
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.137 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,541,797
Number of Sequences: 1026957
Number of extensions: 7234122
Number of successful extensions: 17823
Number of sequences better than 1.0e-02: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17808
Number of HSP's gapped (non-prelim): 6
length of query: 290
length of database: 324,149,939
effective HSP length: 120
effective length of query: 170
effective length of database: 200,915,099
effective search space: 34155566830
effective search space used: 34155566830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 97 (42.0 bits)