BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644932|ref|NP_207102.1| hypothetical protein
[Helicobacter pylori 26695]
(329 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207102.1| (NC_000915) hypothetical protein [Helicoba... 676 0.0
ref|NP_223009.1| (NC_000921) putative [Helicobacter pylori ... 635 0.0
>ref|NP_207102.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64557 hypothetical protein HP0304 - Helicobacter pylori (strain 26695)
gb|AAD07373.1| (AE000548) H. pylori predicted coding region HP0304 [Helicobacter
pylori 26695]
Length = 329
Score = 676 bits (1745), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MKRFVLFLLFMCVCVQAYAEQDYFFRDFKSRDLPQKLHLDKKLSQTIQPCMQLNASKHYT 60
MKRFVLFLLFMCVCVQAYAEQDYFFRDFKSRDLPQKLHLDKKLSQTIQPCMQLNASKHYT
Sbjct: 1 MKRFVLFLLFMCVCVQAYAEQDYFFRDFKSRDLPQKLHLDKKLSQTIQPCMQLNASKHYT 60
Query: 61 STGVREPDKCTKSFKKSALMSYDLALGYLVSKNKQYGLKAIEILNAWAKELQSVDTYQSE 120
STGVREPDKCTKSFKKSALMSYDLALGYLVSKNKQYGLKAIEILNAWAKELQSVDTYQSE
Sbjct: 61 STGVREPDKCTKSFKKSALMSYDLALGYLVSKNKQYGLKAIEILNAWAKELQSVDTYQSE 120
Query: 121 DNINFYMPYMNMAYWFVKKAFPSPEYEDFIKRMRQYSQSALNTNHGAWGILFDVSSALAL 180
DNINFYMPYMNMAYWFVKKAFPSPEYEDFIKRMRQYSQSALNTNHGAWGILFDVSSALAL
Sbjct: 121 DNINFYMPYMNMAYWFVKKAFPSPEYEDFIKRMRQYSQSALNTNHGAWGILFDVSSALAL 180
Query: 181 DDNALLHNSANRWQEWVFKAIDENGVIASAITRSDTSDYHGGPTKGIKGIAYTNFALLAL 240
DDNALLHNSANRWQEWVFKAIDENGVIASAITRSDTSDYHGGPTKGIKGIAYTNFALLAL
Sbjct: 181 DDNALLHNSANRWQEWVFKAIDENGVIASAITRSDTSDYHGGPTKGIKGIAYTNFALLAL 240
Query: 241 TISGELLFENGYDLWGSGAGKRLSVAYNKVATWILNPETFPYFQPNLIGVHNNAYFIILA 300
TISGELLFENGYDLWGSGAGKRLSVAYNKVATWILNPETFPYFQPNLIGVHNNAYFIILA
Sbjct: 241 TISGELLFENGYDLWGSGAGKRLSVAYNKVATWILNPETFPYFQPNLIGVHNNAYFIILA 300
Query: 301 KHYSSPSANELLKQGDLHEDGFRLKLRSP 329
KHYSSPSANELLKQGDLHEDGFRLKLRSP
Sbjct: 301 KHYSSPSANELLKQGDLHEDGFRLKLRSP 329
>ref|NP_223009.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71949 hypothetical protein jhp0289 - Helicobacter pylori (strain J99)
gb|AAD05876.1| (AE001466) putative [Helicobacter pylori J99]
Length = 331
Score = 635 bits (1639), Expect = 0.0
Identities = 309/331 (93%), Positives = 321/331 (96%), Gaps = 2/331 (0%)
Query: 1 MKRFVLFLLFMCVCV--QAYAEQDYFFRDFKSRDLPQKLHLDKKLSQTIQPCMQLNASKH 58
MKRFVLFLLF+CVCV QAYAEQDYFFRDFKS DLPQKLHLDKKLSQTIQPC QLNASKH
Sbjct: 1 MKRFVLFLLFICVCVCVQAYAEQDYFFRDFKSIDLPQKLHLDKKLSQTIQPCAQLNASKH 60
Query: 59 YTSTGVREPDKCTKSFKKSALMSYDLALGYLVSKNKQYGLKAIEILNAWAKELQSVDTYQ 118
YT+TGVREPD CTKSFKKSA++SYDLALGYLVS+NK YGLKAIEILNAWA ELQSVDTYQ
Sbjct: 61 YTATGVREPDACTKSFKKSAMVSYDLALGYLVSQNKPYGLKAIEILNAWANELQSVDTYQ 120
Query: 119 SEDNINFYMPYMNMAYWFVKKAFPSPEYEDFIKRMRQYSQSALNTNHGAWGILFDVSSAL 178
SEDNINFYMPYMNMAYWFVKK FPSPEYEDFI+RMRQYSQSALNTNHGAWGILFDVSSAL
Sbjct: 121 SEDNINFYMPYMNMAYWFVKKEFPSPEYEDFIRRMRQYSQSALNTNHGAWGILFDVSSAL 180
Query: 179 ALDDNALLHNSANRWQEWVFKAIDENGVIASAITRSDTSDYHGGPTKGIKGIAYTNFALL 238
ALDD+ALL +SANRWQEWVFKAIDENGVIASAITRSDTSDYHGGPTKGIKGIAYTNFALL
Sbjct: 181 ALDDHALLQSSANRWQEWVFKAIDENGVIASAITRSDTSDYHGGPTKGIKGIAYTNFALL 240
Query: 239 ALTISGELLFENGYDLWGSGAGKRLSVAYNKVATWILNPETFPYFQPNLIGVHNNAYFII 298
A+TISGELLFENGYDLWGSGAG+RLSVAYNK ATWILNPETFPYFQPNLIGVHNNAYFII
Sbjct: 241 AITISGELLFENGYDLWGSGAGQRLSVAYNKAATWILNPETFPYFQPNLIGVHNNAYFII 300
Query: 299 LAKHYSSPSANELLKQGDLHEDGFRLKLRSP 329
LAKHYSSPSA+ELL+QGDLHEDGFRLKLRSP
Sbjct: 301 LAKHYSSPSADELLEQGDLHEDGFRLKLRSP 331
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,068,957
Number of Sequences: 1026957
Number of extensions: 9310379
Number of successful extensions: 19657
Number of sequences better than 1.0e-02: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19654
Number of HSP's gapped (non-prelim): 2
length of query: 329
length of database: 324,149,939
effective HSP length: 121
effective length of query: 208
effective length of database: 199,888,142
effective search space: 41576733536
effective search space used: 41576733536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 97 (42.0 bits)