BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644933|ref|NP_207103.1| hypothetical protein
[Helicobacter pylori 26695]
(184 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207103.1| (NC_000915) hypothetical protein [Helicoba... 357 5e-98
ref|NP_223010.1| (NC_000921) putative [Helicobacter pylori ... 350 3e-96
ref|NP_282148.1| (NC_002163) putative periplasmic protein [... 103 7e-22
>ref|NP_207103.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64558 hypothetical protein HP0305 - Helicobacter pylori (strain 26695)
gb|AAD07381.1| (AE000549) H. pylori predicted coding region HP0305 [Helicobacter
pylori 26695]
Length = 184
Score = 357 bits (915), Expect = 5e-98
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKT 60
MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKT
Sbjct: 1 MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKT 60
Query: 61 LLEGASASMDSLKVNLGDELKNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAYVRM 120
LLEGASASMDSLKVNLGDELKNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAYVRM
Sbjct: 61 LLEGASASMDSLKVNLGDELKNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAYVRM 120
Query: 121 NEKLVKVPMQYTIAEDKIVVKGVLDLLNFGLKNELASLAKRCESFHEGLTWSQVEIQFES 180
NEKLVKVPMQYTIAEDKIVVKGVLDLLNFGLKNELASLAKRCESFHEGLTWSQVEIQFES
Sbjct: 121 NEKLVKVPMQYTIAEDKIVVKGVLDLLNFGLKNELASLAKRCESFHEGLTWSQVEIQFES 180
Query: 181 MIKG 184
MIKG
Sbjct: 181 MIKG 184
>ref|NP_223010.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71949 hypothetical protein jhp0290 - Helicobacter pylori (strain J99)
gb|AAD05877.1| (AE001466) putative [Helicobacter pylori J99]
Length = 184
Score = 350 bits (899), Expect = 3e-96
Identities = 179/184 (97%), Positives = 183/184 (99%)
Query: 1 MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKT 60
MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKT
Sbjct: 1 MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKT 60
Query: 61 LLEGASASMDSLKVNLGDELKNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAYVRM 120
LLEGA+ASMDSLKVNLGD+ KNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAYVRM
Sbjct: 61 LLEGANASMDSLKVNLGDDTKNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAYVRM 120
Query: 121 NEKLVKVPMQYTIAEDKIVVKGVLDLLNFGLKNELASLAKRCESFHEGLTWSQVEIQFES 180
NEKLVKVPMQYTIA+DK+VVKGVLDLLNFGLKNELASLAKRCESFHEGLTWSQVEIQFES
Sbjct: 121 NEKLVKVPMQYTIADDKLVVKGVLDLLNFGLKNELASLAKRCESFHEGLTWSQVEIQFES 180
Query: 181 MIKG 184
MIKG
Sbjct: 181 MIKG 184
>ref|NP_282148.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||C81375 probable periplasmic protein Cj0998c [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73254.1| (AL139076) putative periplasmic protein [Campylobacter jejuni]
Length = 190
Score = 103 bits (258), Expect = 7e-22
Identities = 63/186 (33%), Positives = 104/186 (55%), Gaps = 6/186 (3%)
Query: 1 MKKM---VLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDS 57
MKK+ VL S LLA L AV+ S K+++ +KTK G F+++ YK K+
Sbjct: 1 MKKILVSVLSSCLLASALSAVSFKEDSLKISFEGYKTKDMIGTKGEFKNVEYKFSKNIKD 60
Query: 58 LKTLLEGASASMDSLKVNLGD--ELKNKNVKEAFF-ALFKNTNIKVTFRNVIEGDHAGSL 114
L + L+GA A++ +G+ ++ N+ + FF AL +T+IKV F++VI G++ G +
Sbjct: 61 LASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDTDIKVVFQDVIAGENKGVI 120
Query: 115 TAYVRMNEKLVKVPMQYTIAEDKIVVKGVLDLLNFGLKNELASLAKRCESFHEGLTWSQV 174
+A + M++K VP+ YTI ++K KG LDL F ++ + H G++W V
Sbjct: 121 SAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSKALKALSDVAAGHGGISWPLV 180
Query: 175 EIQFES 180
+I F +
Sbjct: 181 DISFNA 186
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.316 0.132 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,002,426
Number of Sequences: 1026957
Number of extensions: 3503965
Number of successful extensions: 9518
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9514
Number of HSP's gapped (non-prelim): 3
length of query: 184
length of database: 324,149,939
effective HSP length: 114
effective length of query: 70
effective length of database: 207,076,841
effective search space: 14495378870
effective search space used: 14495378870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 93 (40.4 bits)