BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644935|ref|NP_207105.1| hypothetical protein
[Helicobacter pylori 26695]
(90 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207105.1| (NC_000915) hypothetical protein [Helicoba... 187 2e-47
ref|NP_223012.1| (NC_000921) putative [Helicobacter pylori ... 183 3e-46
ref|NP_282013.1| (NC_002163) putative integral membrane pro... 91 2e-18
>ref|NP_207105.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64558 hypothetical protein HP0307 - Helicobacter pylori (strain 26695)
gb|AAD07382.1| (AE000549) H. pylori predicted coding region HP0307 [Helicobacter
pylori 26695]
Length = 90
Score = 187 bits (476), Expect = 2e-47
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MNFLKKPKYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTHISWLFWLGVIWGVLAS 60
MNFLKKPKYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTHISWLFWLGVIWGVLAS
Sbjct: 1 MNFLKKPKYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTHISWLFWLGVIWGVLAS 60
Query: 61 FLNVYKAYKNMQKDYEELAKDPKYTQNKTK 90
FLNVYKAYKNMQKDYEELAKDPKYTQNKTK
Sbjct: 61 FLNVYKAYKNMQKDYEELAKDPKYTQNKTK 90
>ref|NP_223012.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71949 hypothetical protein jhp0292 - Helicobacter pylori (strain J99)
gb|AAD05879.1| (AE001466) putative [Helicobacter pylori J99]
Length = 92
Score = 183 bits (465), Expect = 3e-46
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 3 FLKKPKYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTHISWLFWLGVIWGVLASFL 62
FLKKPKYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTHISWLFWLGVIWGVLASFL
Sbjct: 5 FLKKPKYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTHISWLFWLGVIWGVLASFL 64
Query: 63 NVYKAYKNMQKDYEELAKDPKYTQNKTK 90
NVYKAYKNMQKDYEELAKDPKYTQNKTK
Sbjct: 65 NVYKAYKNMQKDYEELAKDPKYTQNKTK 92
>ref|NP_282013.1| (NC_002163) putative integral membrane protein [Campylobacter
jejuni]
pir||D81358 probable integral membrane protein Cj0852c [imported] -
Campylobacter jejuni (strain NCTC 11168)
emb|CAB73117.1| (AL139076) putative integral membrane protein [Campylobacter
jejuni]
Length = 109
Score = 91.3 bits (225), Expect = 2e-18
Identities = 44/78 (56%), Positives = 54/78 (68%)
Query: 11 KFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTHISWLFWLGVIWGVLASFLNVYKAYKN 70
K +E A+ LSLG+SMVVA+ +GV IGY LKK T WLFWLGV WG+ A+ LNVYKAYK
Sbjct: 25 KTLEAADGLSLGISMVVAVFIGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKV 84
Query: 71 MQKDYEELAKDPKYTQNK 88
K YEE + + + K
Sbjct: 85 QVKSYEEFKERDELIKEK 102
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.139 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,057,533
Number of Sequences: 1026957
Number of extensions: 2284676
Number of successful extensions: 7779
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7776
Number of HSP's gapped (non-prelim): 3
length of query: 90
length of database: 324,149,939
effective HSP length: 66
effective length of query: 24
effective length of database: 256,370,777
effective search space: 6152898648
effective search space used: 6152898648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 90 (39.3 bits)