BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644936|ref|NP_207106.1| hypothetical protein
[Helicobacter pylori 26695]
         (134 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207106.1|  (NC_000915) hypothetical protein [Helicoba...   264  1e-70
ref|NP_223013.1|  (NC_000921) putative [Helicobacter pylori ...   254  9e-68

>ref|NP_207106.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64558 hypothetical protein HP0308 - Helicobacter pylori (strain 26695)
 gb|AAD07383.1| (AE000549) H. pylori predicted coding region HP0308 [Helicobacter
           pylori 26695]
          Length = 134

 Score =  264 bits (674), Expect = 1e-70
 Identities = 134/134 (100%), Positives = 134/134 (100%)

Query: 1   MCQIQCLLILLSINIVSAIIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQ 60
           MCQIQCLLILLSINIVSAIIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQ
Sbjct: 1   MCQIQCLLILLSINIVSAIIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQ 60

Query: 61  NSIEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGTLLFLHLFNGLIFLIGVFVSSL 120
           NSIEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGTLLFLHLFNGLIFLIGVFVSSL
Sbjct: 61  NSIEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGTLLFLHLFNGLIFLIGVFVSSL 120

Query: 121 SSALLRFLNNNGKF 134
           SSALLRFLNNNGKF
Sbjct: 121 SSALLRFLNNNGKF 134



>ref|NP_223013.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||F71949 hypothetical protein jhp0293 - Helicobacter pylori (strain J99)
 gb|AAD05880.1| (AE001466) putative [Helicobacter pylori J99]
          Length = 134

 Score =  254 bits (650), Expect = 9e-68
 Identities = 130/134 (97%), Positives = 131/134 (97%)

Query: 1   MCQIQCLLILLSINIVSAIIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQ 60
           MCQIQCLLILLSINIVSAIIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQ
Sbjct: 1   MCQIQCLLILLSINIVSAIIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQ 60

Query: 61  NSIEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGTLLFLHLFNGLIFLIGVFVSSL 120
           +S EKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILG LLFLHLFNGL FLIGVFVSSL
Sbjct: 61  DSKEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGVLLFLHLFNGLPFLIGVFVSSL 120

Query: 121 SSALLRFLNNNGKF 134
           SSALLRFLNNNGKF
Sbjct: 121 SSALLRFLNNNGKF 134



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.332    0.150    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,160,009
Number of Sequences: 1026957
Number of extensions: 3147965
Number of successful extensions: 13877
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13875
Number of HSP's gapped (non-prelim): 2
length of query: 134
length of database: 324,149,939
effective HSP length: 110
effective length of query: 24
effective length of database: 211,184,669
effective search space: 5068432056
effective search space used: 5068432056
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 89 (38.9 bits)