BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644938|ref|NP_207108.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(293 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207108.1| (NC_000915) conserved hypothetical protein... 617 e-176
ref|NP_223015.1| (NC_000921) putative [Helicobacter pylori ... 603 e-172
ref|NP_405156.1| (NC_003143) putative polysaccharide deacet... 473 e-132
emb|CAB46604.1| (AJ236887) hypothetical protein [Yersinia p... 472 e-132
gb|AAK53437.1|AF373287_1 (AF373287) imidase [Ralstonia eutr... 468 e-131
ref|NP_111055.1| (NC_002689) Predicted polysaccharide deace... 263 2e-69
ref|NP_457527.1| (NC_003198) conserved hypothetical protein... 198 7e-50
ref|NP_462047.1| (NC_003197) putative xylanase/chitin deace... 198 7e-50
ref|NP_437219.1| (NC_003078) putative saccharide deacetylas... 94 2e-18
ref|NP_440961.1| (NC_000911) unknown protein [Synechocystis... 80 2e-14
ref|NP_633664.1| (NC_003901) putative polysaccharide deacet... 72 6e-12
ref|NP_250208.1| (NC_002516) conserved hypothetical protein... 71 2e-11
ref|NP_615756.1| (NC_003552) polysaccharide deacetylase [Me... 68 1e-10
ref|NP_520241.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 66 5e-10
ref|NP_623004.1| (NC_003869) predicted xylanase/chitin deac... 65 7e-10
ref|NP_421406.1| (NC_002696) conserved hypothetical protein... 62 6e-09
ref|NP_243272.1| (NC_002570) BH2406~unknown conserved prote... 61 1e-08
ref|NP_594418.1| (NC_003424) possible polysaccharide deacet... 60 4e-08
ref|NP_619301.1| (NC_003552) polysaccharide deacetylase [Me... 59 5e-08
ref|NP_633141.1| (NC_003901) Polysaccharide deacetylase [Me... 58 1e-07
pir||B47692 nodulation protein nodB homolog - Bacillus stea... 57 2e-07
sp|Q04729|YFU2_BACST Hypothetical 30.6 kDa protein in FUMA ... 57 2e-07
ref|NP_657774.1| (NC_003995) Polysac_deacet, Polysaccharide... 57 3e-07
ref|NP_619049.1| (NC_003552) polysaccharide deacetylase [Me... 56 4e-07
ref|NP_105847.1| (NC_002678) hypothetical protein [Mesorhiz... 56 4e-07
ref|NP_654361.1| (NC_003995) Polysac_deacet, Polysaccharide... 55 7e-07
ref|NP_655824.1| (NC_003995) Polysac_deacet, Polysaccharide... 55 7e-07
dbj|BAB88972.1| (AB083544) probable polysaccharide deacetyl... 55 7e-07
ref|NP_266439.1| (NC_002662) endo-1,4-beta-xylanase D [Lact... 54 2e-06
emb|CAB40600.1| (AJ010139) polysaccharide deacetylase-like ... 54 3e-06
ref|NP_242783.1| (NC_002570) chitooligosaccharide deacetyla... 53 5e-06
ref|NP_388679.1| (NC_000964) similar to polysaccharide deac... 53 5e-06
ref|NP_126929.1| (NC_000868) hypothetical protein [Pyrococc... 52 6e-06
ref|NP_622518.1| (NC_003869) predicted xylanase/chitin deac... 52 8e-06
ref|NP_302315.1| (NC_002677) carbohydrate degrading enzyme ... 51 2e-05
ref|NP_437328.1| (NC_003078) putative enzyme, similar to ur... 50 4e-05
ref|NP_469781.1| (NC_003212) similar to endo-1,4-beta-xylan... 48 1e-04
ref|NP_244770.1| (NC_002570) endo-1,4-beta-xylanase [Bacill... 48 1e-04
ref|NP_389552.1| (NC_000964) alternate gene name: ymxI~simi... 48 1e-04
ref|NP_625422.1| (NC_003888) putative secreted deacetylase ... 48 1e-04
ref|NP_627904.1| (NC_003888) putative hydrolase [Streptomyc... 48 1e-04
ref|NP_625234.1| (NC_003888) putative oligosaccharide deace... 47 2e-04
ref|NP_616012.1| (NC_003552) polysaccharide deacetylase [Me... 47 3e-04
ref|NP_241109.1| (NC_002570) BH0243~unknown conserved prote... 46 6e-04
ref|NP_463944.1| (NC_003210) similar to endo-1,4-beta-xylan... 45 7e-04
ref|NP_241761.1| (NC_002570) polysaccharide deacetylase (no... 45 7e-04
ref|NP_348998.1| (NC_003030) Predicted xylanase/chitin deac... 45 7e-04
ref|NP_655702.1| (NC_003995) Polysac_deacet, Polysaccharide... 45 7e-04
ref|NP_355372.1| (NC_003062) AGR_C_4393p [Agrobacterium tum... 45 7e-04
ref|NP_242168.1| (NC_002570) BH1302~unknown conserved prote... 45 0.001
ref|NP_623580.1| (NC_003869) predicted xylanase/chitin deac... 45 0.001
gb|AAC43596.1| (U29668) orfA; Method: conceptual translatio... 45 0.001
ref|NP_630282.1| (NC_003888) putative deacetylase (putative... 45 0.001
ref|NP_561743.1| (NC_003366) probable endo-1,4-beta-xylanas... 45 0.001
dbj|BAB79692.1| (AB064264) chitin binding protein [Magnapor... 44 0.002
ref|NP_657340.1| (NC_003995) Polysac_deacet, Polysaccharide... 44 0.002
ref|NP_269476.1| (NC_002737) putative deacetylase [Streptoc... 44 0.002
ref|NP_607478.1| (NC_003485) putative deacetylase [Streptoc... 44 0.002
gb|AAM75311.1|AF454824_108 (AF454824) EF0108 [Enterococcus ... 44 0.002
ref|NP_355286.1| (NC_003062) AGR_C_4231p [Agrobacterium tum... 43 0.004
ref|NP_615942.1| (NC_003552) peptidoglycan GlcNAc deacetyla... 43 0.005
ref|NP_627186.1| (NC_003888) putative bi-functional transfe... 42 0.008
ref|NP_635677.1| (NC_003902) conserved hypothetical protein... 42 0.008
>ref|NP_207108.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||F64558 conserved hypothetical protein HP0310 - Helicobacter pylori
(strain 26695)
gb|AAD07376.1| (AE000549) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 293
Score = 617 bits (1590), Expect = e-176
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWF 60
MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWF
Sbjct: 1 MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWF 60
Query: 61 SPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAP 120
SPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAP
Sbjct: 61 SPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAP 120
Query: 121 TGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRVGDSWSKIDYSLEAKDWMKP 180
TGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRVGDSWSKIDYSLEAKDWMKP
Sbjct: 121 TGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRVGDSWSKIDYSLEAKDWMKP 180
Query: 181 LIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYA 240
LIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYA
Sbjct: 181 LIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYA 240
Query: 241 VFSMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIADDFLKRNPRKK 293
VFSMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIADDFLKRNPRKK
Sbjct: 241 VFSMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIADDFLKRNPRKK 293
>ref|NP_223015.1| (NC_000921) putative [Helicobacter pylori J99]
pir||H71949 hypothetical protein jhp0295 - Helicobacter pylori (strain J99)
gb|AAD05872.1| (AE001466) putative [Helicobacter pylori J99]
Length = 293
Score = 603 bits (1555), Expect = e-172
Identities = 286/293 (97%), Positives = 290/293 (98%)
Query: 1 MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWF 60
MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWF
Sbjct: 1 MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWF 60
Query: 61 SPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAP 120
+PGHSIETF E MKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAP
Sbjct: 61 APGHSIETFPEPMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAP 120
Query: 121 TGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRVGDSWSKIDYSLEAKDWMKP 180
TGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPY+VRVGDSWSKIDYSLEAKDWMKP
Sbjct: 121 TGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYFVRVGDSWSKIDYSLEAKDWMKP 180
Query: 181 LIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYA 240
LIRGVET+LVEIPANWYLDDLPPMMFIKKSPNSFGFVSP DIGQMWIDQFDWVYREMDYA
Sbjct: 181 LIRGVETNLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPRDIGQMWIDQFDWVYREMDYA 240
Query: 241 VFSMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIADDFLKRNPRKK 293
VFSMTIHPDVSARPQVLLMHEKIIEHIN+HEGVRWVTFNEIADDFLKRNPRKK
Sbjct: 241 VFSMTIHPDVSARPQVLLMHEKIIEHINQHEGVRWVTFNEIADDFLKRNPRKK 293
>ref|NP_405156.1| (NC_003143) putative polysaccharide deacetylase [Yersinia pestis]
emb|CAC90395.1| (AJ414149) putative polysaccharide deacetylase [Yersinia pestis]
Length = 302
Score = 473 bits (1217), Expect = e-132
Identities = 220/292 (75%), Positives = 248/292 (84%)
Query: 1 MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWF 60
MAKEI A+GVD+DAVAGWLGSYGGEDSPDDISRG+F+GEVG PRLLKLF ++L ATWF
Sbjct: 10 MAKEIFCAFGVDVDAVAGWLGSYGGEDSPDDISRGMFSGEVGTPRLLKLFADHNLRATWF 69
Query: 61 SPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAP 120
PGHSIETF EQMK + AGHEVG HGYSHENPIAMT QEE VL + L+ LTGK+P
Sbjct: 70 IPGHSIETFPEQMKAVAAAGHEVGIHGYSHENPIAMTPAQEEAVLDHCIALLTQLTGKSP 129
Query: 121 TGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRVGDSWSKIDYSLEAKDWMKP 180
TGYVAPWWEFSN+TNELLLK G KYDHSLMH+DF PYYVRVGD W++IDYS WMKP
Sbjct: 130 TGYVAPWWEFSNVTNELLLKKGIKYDHSLMHHDFHPYYVRVGDHWTRIDYSKSPDHWMKP 189
Query: 181 LIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYA 240
L RG ET LVEIPANWYLDDLPPMMFIKK+PNS GFV+P + +MW DQFDWVYRE DYA
Sbjct: 190 LQRGAETALVEIPANWYLDDLPPMMFIKKAPNSHGFVNPRHLEEMWRDQFDWVYREHDYA 249
Query: 241 VFSMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIADDFLKRNPRK 292
VF+MTIHPDVS RPQVLLM E++++HI H+GVR+VTF+EIADD+L+R PRK
Sbjct: 250 VFTMTIHPDVSGRPQVLLMLERLLKHIQSHQGVRFVTFDEIADDYLRRMPRK 301
>emb|CAB46604.1| (AJ236887) hypothetical protein [Yersinia pseudotuberculosis]
Length = 293
Score = 472 bits (1215), Expect = e-132
Identities = 220/292 (75%), Positives = 247/292 (84%)
Query: 1 MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWF 60
MAKEI A+GVD+DAVAGWLGSYGGEDSPDDISRG+F+GEVG PRLLKLF ++L ATWF
Sbjct: 1 MAKEIFCAFGVDVDAVAGWLGSYGGEDSPDDISRGMFSGEVGTPRLLKLFADHNLRATWF 60
Query: 61 SPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAP 120
PGHSIETF EQMK + AGHEVG HGYSHENPIAMT QEE VL + L+ LTGK P
Sbjct: 61 IPGHSIETFPEQMKAVAAAGHEVGIHGYSHENPIAMTPAQEEAVLDHCIALLTQLTGKPP 120
Query: 121 TGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRVGDSWSKIDYSLEAKDWMKP 180
TGYVAPWWEFSN+TNELLLK G KYDHSLMH+DF PYYVRVGD W++IDYS WMKP
Sbjct: 121 TGYVAPWWEFSNVTNELLLKKGIKYDHSLMHHDFHPYYVRVGDHWTRIDYSKSPDHWMKP 180
Query: 181 LIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYA 240
L RG ET LVEIPANWYLDDLPPMMFIKK+PNS GFV+P + +MW DQFDWVYRE DYA
Sbjct: 181 LQRGAETALVEIPANWYLDDLPPMMFIKKAPNSHGFVNPRHLEEMWRDQFDWVYREHDYA 240
Query: 241 VFSMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIADDFLKRNPRK 292
VF+MTIHPDVS RPQVLLM E++++HI H+GVR+VTF+EIADD+L+R PRK
Sbjct: 241 VFTMTIHPDVSGRPQVLLMLERLLKHIQSHQGVRFVTFDEIADDYLRRMPRK 292
>gb|AAK53437.1|AF373287_1 (AF373287) imidase [Ralstonia eutropha]
Length = 291
Score = 468 bits (1205), Expect = e-131
Identities = 216/291 (74%), Positives = 245/291 (83%)
Query: 1 MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWF 60
M+K+I + +GVD+DAV GWLGSYGGEDSPDDISRG+FAGEVG RLL+LF KY L TWF
Sbjct: 1 MSKDIQITFGVDVDAVGGWLGSYGGEDSPDDISRGMFAGEVGSLRLLRLFDKYGLKTTWF 60
Query: 61 SPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAP 120
PGHS ETF EQMK +VDAGHE+G HGYSHENPIAMT +QEE VL +S+E+I L G+ P
Sbjct: 61 IPGHSAETFPEQMKAVVDAGHEIGIHGYSHENPIAMTPEQEEAVLDRSIEVITRLAGRVP 120
Query: 121 TGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRVGDSWSKIDYSLEAKDWMKP 180
TGYVAPWWEFS +TNELLLK G KYDHSLMHNDF PYYVRVGD W++IDY+ WMKP
Sbjct: 121 TGYVAPWWEFSPVTNELLLKKGIKYDHSLMHNDFHPYYVRVGDQWTRIDYNKHPDTWMKP 180
Query: 181 LIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYA 240
L+RG ET LVEIPANWYLDDLPPMMFIKKSPNS GFV+P DI QMW DQFDWVYRE DYA
Sbjct: 181 LVRGKETRLVEIPANWYLDDLPPMMFIKKSPNSHGFVNPRDIEQMWRDQFDWVYREHDYA 240
Query: 241 VFSMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIADDFLKRNPR 291
VF +TIHPDVS RPQVLLM E++IEH H+GVR++T ++IADDFL+R PR
Sbjct: 241 VFPITIHPDVSGRPQVLLMLERLIEHFQSHDGVRFMTCDQIADDFLRRQPR 291
>ref|NP_111055.1| (NC_002689) Predicted polysaccharide deacetylase [Thermoplasma
volcanium]
dbj|BAB59678.1| (AP000992) hypothetical protein [Thermoplasma volcanium]
Length = 299
Score = 263 bits (671), Expect = 2e-69
Identities = 126/290 (43%), Positives = 187/290 (64%), Gaps = 2/290 (0%)
Query: 1 MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWF 60
M +EI V+Y V +++AGW+ +YGG +S D+SRG+ A +GIPRLL++F+K+ + ++W+
Sbjct: 1 MDREIFVSYSVSANSIAGWV-AYGGSESFHDMSRGILAARIGIPRLLRMFRKFCIKSSWY 59
Query: 61 SPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAP 120
PG +ETF ++++ I GHE+G HGY HE +M+ QEE V+ K+ EL+KD+TG P
Sbjct: 60 VPGIVMETFPDEVRAIYADGHELGTHGYLHEYAPSMSYDQEERVIAKTAELVKDITGHNP 119
Query: 121 TGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRVGDSWSKIDYSLEAKDWMKP 180
G++ WE S T +L+ HG+KY L +DF P+Y G SW ++DYS + WMKP
Sbjct: 120 YGHLPSQWEESVNTMRILMNHGYKYARGLEDDDFHPFYASTGRSWPRVDYSKLPETWMKP 179
Query: 181 LIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYA 240
+ G + D VEIP NW+L+D F K P +S ++ + W FD+VYRE +YA
Sbjct: 180 MNLGEKIDFVEIPINWFLNDGTYFNFNKHVPGKRP-MSLSEVLENWKAAFDYVYREYEYA 238
Query: 241 VFSMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIADDFLKRNP 290
+F + IHPD S P+V + HEK I +I +H G +V+ + IA+DF KR P
Sbjct: 239 IFPVNIHPDTSGNPEVQIFHEKFISYILEHNGASFVSDSFIAEDFRKRYP 288
>ref|NP_457527.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD02964.1| (AL627277) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 307
Score = 198 bits (503), Expect = 7e-50
Identities = 105/280 (37%), Positives = 154/280 (54%), Gaps = 15/280 (5%)
Query: 3 KEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWFSP 62
K I V GVD+DA + WLG + SP +SRG F +VG+PRLLKLFK+ ++ T+F P
Sbjct: 10 KRIAVNLGVDVDAQSLWLGGFN-RPSPSFMSRGEFGAQVGVPRLLKLFKENNIKTTFFIP 68
Query: 63 GHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAPTG 122
GH+++TF E K I DAGHE+ HGY HENP + E ++ + K G P G
Sbjct: 69 GHTVDTFPEISKAIFDAGHEIAHHGYYHENPTLVNRDTERRLMDLAFACYKRHFGIRPVG 128
Query: 123 YVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRVGDSWSKIDYSLEAKDWMKPLI 182
Y +P+W++S T +LL + GF YD SLM D PY+ + W +W I
Sbjct: 129 YRSPYWDYSENTLDLLEEAGFLYDSSLMARDLVPYHPQ---RWQ--------VNWETGNI 177
Query: 183 RGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYAVF 242
G + ++EIP +WYLDD P + + + N G + + W D F + Y + ++
Sbjct: 178 AGPASAILEIPVSWYLDDFPALAY---TGNQEGMSDTDGVLRRWKDIFTYAYNHQENGLY 234
Query: 243 SMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIA 282
+M +HP + ++M ++IEHI H+GV + T EIA
Sbjct: 235 AMALHPQIIGHGHHMMMLSRLIEHIKGHDGVWFATCEEIA 274
>ref|NP_462047.1| (NC_003197) putative xylanase/chitin deacetylase [Salmonella
typhimurium LT2]
gb|AAL22006.1| (AE008844) putative xylanase/chitin deacetylase [Salmonella
typhimurium LT2]
Length = 307
Score = 198 bits (503), Expect = 7e-50
Identities = 105/280 (37%), Positives = 156/280 (55%), Gaps = 15/280 (5%)
Query: 3 KEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWFSP 62
K I V GVD+DA + WLG + SP +SRG F +VG+PRLLKLFK+ ++ T+F P
Sbjct: 10 KRIAVNLGVDVDAQSLWLGGFN-RPSPSFMSRGEFGAQVGVPRLLKLFKENNIKTTFFIP 68
Query: 63 GHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAPTG 122
GH+++TF E +K I DAGHE+ HGY HENP + E ++ + K G P G
Sbjct: 69 GHTVDTFPEIIKAIFDAGHEIAHHGYYHENPTLVNRDTERRLMDLAFACYKRHFGIRPVG 128
Query: 123 YVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRVGDSWSKIDYSLEAKDWMKPLI 182
Y +P+W++S T +LL + GF YD SLM D PY+ + W +W I
Sbjct: 129 YRSPYWDYSENTLDLLEEAGFLYDSSLMARDLVPYHPQ---RWQ--------VNWETGNI 177
Query: 183 RGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYAVF 242
G + ++EIP +WYLDD P + + + N G + + W D F + Y + +++
Sbjct: 178 AGPASAILEIPVSWYLDDFPALAY---TGNQEGMSDTDGVLRRWKDIFTYAYHHQENSLY 234
Query: 243 SMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIA 282
+M +HP + ++M ++IEHI H+GV + T EIA
Sbjct: 235 AMALHPQIIGHGHHMMMLLRLIEHIKGHDGVWFATCEEIA 274
>ref|NP_437219.1| (NC_003078) putative saccharide deacetylase, slightly similar to
NodB protein [Sinorhizobium meliloti]
emb|CAC49079.1| (AL603644) putative saccharide deacetylase, slightly similar to
NodB protein [Sinorhizobium meliloti]
Length = 292
Score = 93.6 bits (231), Expect = 2e-18
Identities = 79/280 (28%), Positives = 116/280 (41%), Gaps = 27/280 (9%)
Query: 7 VAYGVDIDAVAGWLGSYGGE-DSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWFSPGHS 65
V G D+DA W+G+ D S G + VGI R+++L + + AT+F+PG +
Sbjct: 29 VFIGFDVDAETAWIGNNPSNVDRMVTTSHGGYDARVGIARIVELMAELAMKATFFTPGWT 88
Query: 66 IETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAPTGYVA 125
E IV AGHE+G HG+ H+ P ++ + + + E ++ G P GY A
Sbjct: 89 ALAHPEACDRIVAAGHEIGHHGFLHKMPDRDRLEETFEEIDRGFEALQRAFGIRPVGYRA 148
Query: 126 PWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRVGDSWSKIDYSLEAKDWMKPLIRGV 185
P E L K G +Y S +D PY D GV
Sbjct: 149 PSGENFPELIAYLAKSGIRYSSS-FRDDILPYRHASAD--------------------GV 187
Query: 186 ETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYREMDYAVFSMT 245
VEIP N+ DD M + S + +WID+F+ + V ++
Sbjct: 188 PGP-VEIPVNFAFDDWNFGMSSRSSARP--LFGREAVLALWIDEFEATHAW--GGVTTLV 242
Query: 246 IHPDVSARPQVLLMHEKIIEHINKHEGVRWVTFNEIADDF 285
+HP VS RP + + H+ V T EIAD F
Sbjct: 243 LHPQVSGRPMRWHLLRDFLRHVQAKGDVWIATGKEIADHF 282
>ref|NP_440961.1| (NC_000911) unknown protein [Synechocystis sp. PCC 6803]
pir||S77307 hypothetical protein sll1306 - Synechocystis sp. (strain PCC 6803)
dbj|BAA17641.1| (D90907) ORF_ID:sll1306~unknown protein [Synechocystis sp. PCC
6803]
Length = 335
Score = 80.5 bits (197), Expect = 2e-14
Identities = 67/246 (27%), Positives = 111/246 (44%), Gaps = 38/246 (15%)
Query: 42 GIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQE 101
G+PR+L L KY + T G ++E + ++ K IV GHE AHG+ +N MTA QE
Sbjct: 95 GVPRILDLLDKYKIKITSHMSGRTVEMYPDRAKEIVQRGHEAAAHGWDWDNEFNMTAPQE 154
Query: 102 EDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRV 161
D + ++V++I +TG+ GY AP S +L + GF Y + D P+ V +
Sbjct: 155 RDFIQRNVDIILKVTGQRAVGYNAPGLRGSVNILTVLNELGFVYHIDDVSRD-EPFIVNL 213
Query: 162 --GDSWSKIDYSLEAKDWMKPLIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFGFVSP 219
G S + Y++ D IR E + YL +L
Sbjct: 214 NNGKSIMVVPYAVYLND-----IRAYEARF--FSSGQYLTELK----------------- 249
Query: 220 HDIGQMWIDQFDWVYREMDY--AVFSMTIHPDVSARPQVLLMHEKIIEHINKHEGVRWVT 277
+ FD +Y E Y + ++T+H D RP+ + + E ++++ GV ++
Sbjct: 250 --------NSFDRLYEEAAYRRRMMAVTMH-DRLQRPEHVYVFEDFLKYVMAKPGVAFMK 300
Query: 278 FNEIAD 283
+IA+
Sbjct: 301 KIDIAN 306
>ref|NP_633664.1| (NC_003901) putative polysaccharide deacetylase [Methanosarcina
mazei Goe1]
gb|AAM31336.1| (AE013398) putative polysaccharide deacetylase [Methanosarcina
mazei Goe1]
Length = 283
Score = 72.4 bits (176), Expect = 6e-12
Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 46 LLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVL 105
LL L +Y+ AT+F G E + E ++ I + GHE+G+H YSH+ + K E +
Sbjct: 45 LLDLLDEYNTKATFFVLGKLAEKYPELIREISENGHEIGSHSYSHKTLHELGIKNFEYEI 104
Query: 106 LKSVELIKDLTGKAPTGYVAPWWEFSNITN---ELLLKHGFKYDHSL 149
K+ E+++ +TG+ P G+ AP + N ++L+K+G++YD S+
Sbjct: 105 EKTNEILRSITGRYPLGFRAPTFSIDNTNKWALDILVKNGYRYDSSI 151
>ref|NP_250208.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||H83455 conserved hypothetical protein PA1517 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG04906.1|AE004580_6 (AE004580) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 308
Score = 70.9 bits (172), Expect = 2e-11
Identities = 67/257 (26%), Positives = 115/257 (44%), Gaps = 34/257 (13%)
Query: 37 FAGEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAM 96
+ G+ RLLKLFK+ ++P T F+ + + E ++ +V GHE+ +HGY + M
Sbjct: 77 YGSRAGVWRLLKLFKRRNVPLTVFAVAMAAQRNPEVIRAMVADGHEICSHGYRWIDYQYM 136
Query: 97 TAKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKH-GFKYDHSLMHNDFT 155
QE + +L+++ ++ +LTG+ P G+ T L+++ GF YD S ++D
Sbjct: 137 DEAQEREHMLEAIRILTELTGQRPVGWYT--GRTGPNTRRLVMEEGGFLYD-SDTYDDDL 193
Query: 156 PYYVRVGDSWSKIDYSLEAKDWMKPLIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFG 215
PY+ P + LV IP Y D M F + G
Sbjct: 194 PYW--------------------DPASTAEKPHLV-IP---YTLDTNDMRFTQVQ----G 225
Query: 216 FVSPHDIGQMWIDQFDWVYREMDYA--VFSMTIHPDVSARPQVLLMHEKIIEHINKHEGV 273
F + Q D FD +Y E A + S+ +H + RP + E+ I++ H+ V
Sbjct: 226 FNNGEQFFQYLKDAFDVLYEEGATAPKMLSIGLHCRLIGRPARMAALERFIQYAQSHDKV 285
Query: 274 RWVTFNEIADDFLKRNP 290
+ +IA + + +P
Sbjct: 286 WFARREDIARHWHREHP 302
>ref|NP_615756.1| (NC_003552) polysaccharide deacetylase [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04236.1| (AE010741) polysaccharide deacetylase [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
Length = 250
Score = 68.2 bits (165), Expect = 1e-10
Identities = 45/126 (35%), Positives = 66/126 (51%), Gaps = 6/126 (4%)
Query: 26 EDSPDDIS--RGLFAGEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEV 83
ED P ++ RG+ E G+P LL+LFKK + AT+F G E + + + + + GHE+
Sbjct: 24 EDCPPMLTSTRGM---EEGMPALLELFKKEGIKATFFVTGMMAEQYPDLICRVPEEGHEL 80
Query: 84 GAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGF 143
G HGY+H M K+E + LK + K + AP +F ELL + GF
Sbjct: 81 GCHGYTHTRFDRM-GKEEAKIALKQAGNVLRQFEKRVVSFRAPNLQFPESYLELLEEEGF 139
Query: 144 KYDHSL 149
+YD SL
Sbjct: 140 RYDSSL 145
>ref|NP_520241.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD15827.1| (AL646068) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 328
Score = 65.9 bits (159), Expect = 5e-10
Identities = 64/261 (24%), Positives = 115/261 (43%), Gaps = 35/261 (13%)
Query: 37 FAGEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAM 96
+ G+ R+L+ F++ LP T F +++ + + VD GHE+ HG+ + +
Sbjct: 85 YGARAGVWRILREFEQRGLPLTIFGVSMALQRHPDVTQAFVDLGHEIACHGWRWIHYQHI 144
Query: 97 TAKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKH-GFKYDHSLMHNDFT 155
E + + VE+I++LTG AP G+ S T L+++H GF YD + D
Sbjct: 145 DEATEREHMRIGVEIIRELTGSAPLGWYT--GRDSPNTRRLVVEHGGFVYDAD-YYGDDL 201
Query: 156 PYYVRVGDSWSKIDYSLEAKDWMKPLIRGVETDLVEIPANWYLDDLPPMMFIKKSPNSFG 215
P+ W++++ S+ G + +P Y D M F SP G
Sbjct: 202 PF-------WTEVETSV-----------GERKPHLVVP---YTLDTNDMRF--ASPQ--G 236
Query: 216 FVSPHDIGQMWIDQFDWVYREMD------YAVFSMTIHPDVSARPQVLLMHEKIIEHINK 269
F + Q D FD +Y E D + S+ +H + RP L ++ ++++
Sbjct: 237 FNTADHFYQYLKDAFDVLYEEGDPDGLAQPKMLSIGMHCRLLGRPARLRALQRFLDYVQS 296
Query: 270 HEGVRWVTFNEIADDFLKRNP 290
H+ V +IA +++ +P
Sbjct: 297 HDKVWICRRIDIARHWIEHHP 317
>ref|NP_623004.1| (NC_003869) predicted xylanase/chitin deacetylase
[Thermoanaerobacter tengcongensis]
gb|AAM24608.1| (AE013098) predicted xylanase/chitin deacetylase
[Thermoanaerobacter tengcongensis]
Length = 239
Score = 65.5 bits (158), Expect = 7e-10
Identities = 33/106 (31%), Positives = 61/106 (57%)
Query: 39 GEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTA 98
G+ IP++L +F+K + T+F G E + +K I GHE+G+HGYSH +++
Sbjct: 64 GDEYIPKMLDIFEKNDVHITFFFEGKWAEKNPDVVKEIYKKGHEIGSHGYSHIKYTSLSK 123
Query: 99 KQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFK 144
+ E + KS E ++ +TG+ PT + P+ +F+ ++ + G+K
Sbjct: 124 EDCEKDIKKSEEALEKITGEKPTLFAPPYGDFNEQVVKIAEELGYK 169
>ref|NP_421406.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK24574.1| (AE005928) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 304
Score = 62.4 bits (150), Expect = 6e-09
Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 37 FAGEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAM 96
+ G R+ +LF+++ LP T F ++E E ++ ++ +G E+ +HGY + +
Sbjct: 75 YGSRAGFWRIRRLFEEFDLPLTVFGVAQAMERHPEAVEAMMQSGWEIASHGYRWIDYQHV 134
Query: 97 TAKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLL---KHGFKYDHSLMHND 153
+ QE + + +++E+ K LTG+ P G W++ N L + GF YD +D
Sbjct: 135 SPDQEMEHIQQAIEIQKRLTGERPMG----WYQGRTSPNTARLIAQEGGFVYDADSYADD 190
Query: 154 FTPYYVRVGDSWSKIDYSLEAKDWMKPLIRGVETDLVEIPANWYLDDLPPMMFIKKSPNS 213
+ + G + Y+LEA D +G T
Sbjct: 191 LPYWDDQHGRAQLITPYTLEANDMRFTATQGFNT----------------------GEQF 228
Query: 214 FGFVSPHDIGQMWIDQFDWVYREMDYA--VFSMTIHPDVSARPQVLLMHEKIIEHINKHE 271
F ++ D FD +Y E + A + S+ +H V +P + + +EH+ H+
Sbjct: 229 FTYLR---------DAFDALYLEGETAPKMMSVGLHCRVVGKPGRIGALRRFLEHVVSHD 279
Query: 272 GVRWVTFN-EIADDFLKRNP 290
V WV +IA ++ +P
Sbjct: 280 KV-WVARRIDIARHWIATHP 298
>ref|NP_243272.1| (NC_002570) BH2406~unknown conserved protein [Bacillus halodurans]
dbj|BAB06125.1| (AP001515) BH2406~unknown conserved protein [Bacillus halodurans]
Length = 323
Score = 61.2 bits (147), Expect = 1e-08
Identities = 28/106 (26%), Positives = 57/106 (53%)
Query: 39 GEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTA 98
G +P +LK KY + +T+F G ++ + MIV+ GHE+G H YSH + +T
Sbjct: 141 GNEHLPTMLKTMNKYDVKSTFFLDGSWVKKHPQLATMIVEEGHEIGNHAYSHPDMQRLTR 200
Query: 99 KQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFK 144
++ ++ ++++ E+IK P + P ++++ + +HG +
Sbjct: 201 ERMDEEIVQTNEVIKATIEVTPKWFAPPSGSYNDLVVQRAAEHGMR 246
>ref|NP_594418.1| (NC_003424) possible polysaccharide deacetylase
[Schizosaccharomyces pombe]
pir||T37990 probable polysaccharide deacetylase - fission yeast
(Schizosaccharomyces pombe)
emb|CAB10114.1| (Z97209) possible polysaccharide deacetylase [Schizosaccharomyces
pombe]
Length = 320
Score = 59.7 bits (143), Expect = 4e-08
Identities = 74/273 (27%), Positives = 118/273 (43%), Gaps = 47/273 (17%)
Query: 37 FAGEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAM 96
+ G R+L LFKK+ +P T ++ G ++E + + +AG EVG+H + N +
Sbjct: 77 YGSRCGFWRILNLFKKHKVPFTCWAIGQAVEKNPVVVGAMEEAGCEVGSHSHRWINYEGV 136
Query: 97 TAKQEEDVLLKSVELIKDLTGKAPTGYVAP--WWE----------FSNITNELLLKHGFK 144
+ E + + KSV+ I+ KA AP W+ + +L L F
Sbjct: 137 PPETEYEHIKKSVQAIQ----KASPSNSAPRSWYTGRASLNTRKLVCQVYKDLGLPQPFD 192
Query: 145 YDHSLMHNDFTPYYVRVGDSWSKIDYSLEAKDWMKPLIRGVETD--LVEIPANWYLDDLP 202
D +ND PY+ V D + KP G E D L+ +P ++D+
Sbjct: 193 SDE---YNDDYPYW--VADPLAS-----------KP---GAEDDKGLLIVPYTLEVNDM- 232
Query: 203 PMMFIKKSPNSFGFVSPHDIGQMWIDQFDWVYRE-MDYAVFSMTI--HPDVSARPQVLLM 259
K + GF + D D FD +Y E ++ A MTI H ++ RP
Sbjct: 233 ------KYAVAPGFCNSDDFYTYARDAFDVLYEEGLEGAPKMMTIGLHCRLTGRPGRFRG 286
Query: 260 HEKIIEHINKHEGVRWVTFNEIADDFLKRNPRK 292
+K++EHI EGV T +IA + ++P K
Sbjct: 287 LQKLMEHITSKEGVWVATREQIAQAWSAKHPYK 319
>ref|NP_619301.1| (NC_003552) polysaccharide deacetylase [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM07781.1| (AE011164) polysaccharide deacetylase [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
Length = 301
Score = 59.3 bits (142), Expect = 5e-08
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 45 RLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPI-------AMT 97
R+L L ++++ AT+F +IE + +++IVD GHE+ HG +H I M+
Sbjct: 51 RVLNLLDEFNINATFFVVADTIEHYPGLVELIVDRGHELACHGLNHACKIDPKTKRPLMS 110
Query: 98 AKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDF 154
++ E L + ++++ ++G+ GY AP + L K GFKYD S+ N F
Sbjct: 111 VEEFEQRTLVAKKMLEKISGEKLVGYRAPNALVGGWMIDSLEKMGFKYDSSVSVNSF 167
>ref|NP_633141.1| (NC_003901) Polysaccharide deacetylase [Methanosarcina mazei Goe1]
gb|AAM30813.1| (AE013339) Polysaccharide deacetylase [Methanosarcina mazei Goe1]
Length = 301
Score = 57.8 bits (138), Expect = 1e-07
Identities = 36/117 (30%), Positives = 61/117 (51%), Gaps = 7/117 (5%)
Query: 45 RLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPI-------AMT 97
R+L + ++++ AT+F +IE + ++ I D GHE+ HG SH I M+
Sbjct: 51 RVLDILDEFNVNATFFVVADTIEHYPGLVESIADRGHELACHGLSHACKIDPETKKQLMS 110
Query: 98 AKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDF 154
++ E L + ++++ ++G+ GY AP S + L K GFKYD S+ N F
Sbjct: 111 VEEFEQRTLTAKKMLEKISGEKLIGYRAPNALVSGWMIDSLEKMGFKYDSSVSVNSF 167
>pir||B47692 nodulation protein nodB homolog - Bacillus stearothermophilus
Length = 265
Score = 57.4 bits (137), Expect = 2e-07
Identities = 34/101 (33%), Positives = 58/101 (56%), Gaps = 1/101 (0%)
Query: 45 RLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDV 104
++L + KK+ + AT+F GH ++T + +K +V GH VG H +SH + ++A + +
Sbjct: 84 KILDVLKKHDVHATFFVTGHYLKTAPDLVKRMVKEGHIVGNHSWSHPDMTTISADKIKKE 143
Query: 105 LLKSVELIKDLTGKAPTGYV-APWWEFSNITNELLLKHGFK 144
L + +K+LTG+ T YV P FS T L K+G++
Sbjct: 144 LDAVSDKVKELTGQEGTVYVRPPRGIFSERTLALSEKYGYR 184
>sp|Q04729|YFU2_BACST Hypothetical 30.6 kDa protein in FUMA 3'region precursor (ORF2)
gb|AAA72318.1| (L05611) [fumA(Bst)] gene products [Geobacillus stearothermophilus]
Length = 265
Score = 57.4 bits (137), Expect = 2e-07
Identities = 34/101 (33%), Positives = 58/101 (56%), Gaps = 1/101 (0%)
Query: 45 RLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDV 104
++L + KK+ + AT+F GH ++T + +K +V GH VG H +SH + ++A + +
Sbjct: 84 KILDVLKKHDVHATFFVTGHYLKTAPDLVKRMVKEGHIVGNHSWSHPDMTTISADKIKKE 143
Query: 105 LLKSVELIKDLTGKAPTGYV-APWWEFSNITNELLLKHGFK 144
L + +K+LTG+ T YV P FS T L K+G++
Sbjct: 144 LDAVSDKVKELTGQEGTVYVRPPRGIFSERTLALSEKYGYR 184
>ref|NP_657774.1| (NC_003995) Polysac_deacet, Polysaccharide deacetylase [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 299
Score = 56.6 bits (135), Expect = 3e-07
Identities = 30/92 (32%), Positives = 49/92 (52%)
Query: 39 GEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTA 98
G +PR+L++ KK+ + AT+F G ++ KMIVDA EVG H Y+H N +++
Sbjct: 122 GNEYLPRILEILKKHDVKATFFLEGRWVKENLRFAKMIVDANQEVGNHSYTHPNMKTLSS 181
Query: 99 KQEEDVLLKSVELIKDLTGKAPTGYVAPWWEF 130
+ D L K+ +I+ T + + P F
Sbjct: 182 DEIRDQLQKTNRMIEAATNQKVRWFAPPSGSF 213
>ref|NP_619049.1| (NC_003552) polysaccharide deacetylase [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM07529.1| (AE011130) polysaccharide deacetylase [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
Length = 274
Score = 56.2 bits (134), Expect = 4e-07
Identities = 33/96 (34%), Positives = 53/96 (54%), Gaps = 3/96 (3%)
Query: 57 ATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLT 116
AT+F G+ E E +K I D HE+G HGYSH+ +T Q + L+KS+++IK +T
Sbjct: 49 ATFFVLGYVAERHPELIKRIHDLNHELGTHGYSHKPINRLTPLQFKKELIKSIKIIKSIT 108
Query: 117 GKAPTGYVAPWWEFSNITN---ELLLKHGFKYDHSL 149
G+ + A + T+ +++ G KYD S+
Sbjct: 109 GEEVVCHRASNFTIMKNTSWAIDIMKNCGIKYDSSV 144
>ref|NP_105847.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51633.1| (AP003005) hypothetical protein [Mesorhizobium loti]
Length = 472
Score = 56.2 bits (134), Expect = 4e-07
Identities = 57/263 (21%), Positives = 107/263 (40%), Gaps = 43/263 (16%)
Query: 37 FAGEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAM 96
+ G RLL+LF + +P T + ++ +Q+ + DAG E+ +HG +
Sbjct: 75 YGARAGFWRLLRLFSESQVPVTCYGVASALARSPDQVTAMQDAGWEIASHGLRWIDYRDH 134
Query: 97 TAKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLL---KHGFKYDHSLMHND 153
+A+ E L +++L ++TG+ PTG W+ N + L + GF Y ++
Sbjct: 135 SAEDERRDLEAAIKLHYEVTGQRPTG----WYTGRTSVNTVRLVAEEGGFDYVSDTYDDE 190
Query: 154 FTPYYVRVGDSWSKIDYSLEAKDWMKPLIRGVETDLVEIPANWYLDDLPPMMFIKKSPNS 213
++ G + I Y+L+A D M F
Sbjct: 191 LPYWFEHAGGTQLIIPYTLDAND---------------------------MRFATPQ--- 220
Query: 214 FGFVSPHDIGQMWIDQFDWVYREMDYA---VFSMTIHPDVSARPQVLLMHEKIIEHINKH 270
GF S D FD +Y E + ++ +H + RP + ++ ++++ H
Sbjct: 221 -GFNSGDQFFAYLKDSFDTLYAEGQAGRPRMMNIGLHCRLVGRPGRVAALKRFVDYVKSH 279
Query: 271 EGVRWVTFN-EIADDFLKRNPRK 292
+ V W+T +IA + + +P K
Sbjct: 280 DKV-WLTRRIDIAKHWQENHPYK 301
>ref|NP_654361.1| (NC_003995) Polysac_deacet, Polysaccharide deacetylase [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 260
Score = 55.5 bits (132), Expect = 7e-07
Identities = 35/110 (31%), Positives = 55/110 (49%), Gaps = 6/110 (5%)
Query: 21 GSYGGEDSPDDI----SRGLFAGEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMI 76
G Y G+ DI G G G ++L + K+ +PAT+F GH I+T + + +
Sbjct: 59 GFYLGDTKKKDIYLTFDNGYENGYTG--KILDVLKEKKVPATFFVTGHYIKTQKDLLLRM 116
Query: 77 VDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAPTGYVAP 126
D GH +G H +SH + A+ ++ + L E IK +TG+ YV P
Sbjct: 117 KDEGHIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKVTGQKEVKYVRP 166
>ref|NP_655824.1| (NC_003995) Polysac_deacet, Polysaccharide deacetylase [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 275
Score = 55.5 bits (132), Expect = 7e-07
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEED 103
P++L K++++ AT+F G + E F +K I + GH +G H YSH N + + +
Sbjct: 97 PKILDKLKQHNVKATFFLLGENAEKFPNVVKRIANEGHVIGNHTYSHPNLAKVNDAEYRN 156
Query: 104 VLLKSVELIKDLTGKAPTGYVAPWWE 129
++K+ E++ L G AP P+ E
Sbjct: 157 QIIKTEEILNRLAGYAPKFIRPPYGE 182
>dbj|BAB88972.1| (AB083544) probable polysaccharide deacetylase [Bacillus cereus]
Length = 144
Score = 55.5 bits (132), Expect = 7e-07
Identities = 35/110 (31%), Positives = 55/110 (49%), Gaps = 6/110 (5%)
Query: 21 GSYGGEDSPDDI----SRGLFAGEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMI 76
G Y G+ DI G G G ++L + K+ +PAT+F GH I+T + + +
Sbjct: 4 GFYLGDTKKKDIYLTFDNGYENGYTG--KILDVLKEKKVPATFFVTGHYIKTQKDLLLRM 61
Query: 77 VDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAPTGYVAP 126
D GH +G H +SH + A+ ++ + L E IK +TG+ YV P
Sbjct: 62 KDEGHIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKVTGQKEVKYVRP 111
>ref|NP_266439.1| (NC_002662) endo-1,4-beta-xylanase D [Lactococcus lactis subsp.
lactis]
gb|AAK04381.1|AE006265_9 (AE006265) endo-1,4-beta-xylanase D [Lactococcus lactis subsp.
lactis]
Length = 372
Score = 54.3 bits (129), Expect = 2e-06
Identities = 25/88 (28%), Positives = 51/88 (57%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEED 103
P+LLK+F +PAT+F+ G + + +K D G+EV +H + H++ + ++ Q++
Sbjct: 192 PQLLKIFSDAQVPATFFALGKQAQACPQIIKEEADRGNEVASHTWDHKDLVTLSPDQQKQ 251
Query: 104 VLLKSVELIKDLTGKAPTGYVAPWWEFS 131
+ + +LI +TGK T + P+ ++
Sbjct: 252 EIESANQLINKITGKNVTLFRPPYGSYN 279
>emb|CAB40600.1| (AJ010139) polysaccharide deacetylase-like protein [Bacillus
cereus]
Length = 260
Score = 53.5 bits (127), Expect = 3e-06
Identities = 34/110 (30%), Positives = 55/110 (49%), Gaps = 6/110 (5%)
Query: 21 GSYGGEDSPDDI----SRGLFAGEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMI 76
G Y G+ DI G G G ++L + K+ +PAT+F GH I+T + + +
Sbjct: 59 GFYLGDTKKKDIYLTFDNGYENGYTG--KILDVLKEKKVPATFFVTGHYIKTQKDLLLRM 116
Query: 77 VDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAPTGYVAP 126
+ GH +G H +SH + A+ ++ + L E IK +TG+ YV P
Sbjct: 117 KNEGHIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKVTGQKEVKYVRP 166
>ref|NP_242783.1| (NC_002570) chitooligosaccharide deacetylase [Bacillus halodurans]
dbj|BAB05636.1| (AP001513) chitooligosaccharide deacetylase [Bacillus halodurans]
Length = 276
Score = 52.8 bits (125), Expect = 5e-06
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAM--TAKQE 101
P++L + ++Y++PAT+F G E F + + + GH +G H YSH N + A E
Sbjct: 96 PQVLDVLQEYNVPATFFVMGRRAERFPDLVTRMAAEGHVIGNHSYSHPNFVVEDDVALLE 155
Query: 102 EDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLK 140
++V L++ +I++L G P + AP + + NEL+ K
Sbjct: 156 QEV-LQTEAIIQNLVGYRPRFFRAP---YGFLYNELVEK 190
>ref|NP_388679.1| (NC_000964) similar to polysaccharide deacetylase [Bacillus
subtilis]
pir||B69807 polysaccharide deacetylase homolog yfjS - Bacillus subtilis
dbj|BAA23389.1| (D83967) YfjS [Bacillus subtilis]
emb|CAB12627.1| (Z99108) similar to polysaccharide deacetylase [Bacillus subtilis]
Length = 263
Score = 52.8 bits (125), Expect = 5e-06
Identities = 26/83 (31%), Positives = 44/83 (52%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEED 103
P++L + KK+ + T+F GH ++ + +K + D GH +G H + H + TA Q +D
Sbjct: 82 PKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNHSFHHPDLTTKTADQIQD 141
Query: 104 VLLKSVELIKDLTGKAPTGYVAP 126
L E + +TGK Y+ P
Sbjct: 142 ELDSVNEEVYKITGKQDNLYLRP 164
>ref|NP_126929.1| (NC_000868) hypothetical protein [Pyrococcus abyssi]
pir||B75033 hypothetical protein PAB0828 - Pyrococcus abyssi (strain Orsay)
emb|CAB50159.1| (AJ248287) hypothetical protein [Pyrococcus abyssi]
Length = 238
Score = 52.4 bits (124), Expect = 6e-06
Identities = 32/107 (29%), Positives = 57/107 (52%), Gaps = 6/107 (5%)
Query: 42 GIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQE 101
G+PR+L+L K+ +P T+F E + E + I + HE+G HGY+HE ++ K+
Sbjct: 29 GLPRILELLDKHEVPGTFFFTAKWAERYQELVDEIRER-HELGCHGYAHERFDKLSLKEA 87
Query: 102 EDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHS 148
E V+ K+ +++ D+ + AP + ++L +GF D S
Sbjct: 88 ESVIEKAKKVLGDV-----KSFRAPNLKLPLEYYKILKDNGFLVDSS 129
>ref|NP_622518.1| (NC_003869) predicted xylanase/chitin deacetylase
[Thermoanaerobacter tengcongensis]
gb|AAM24122.1| (AE013053) predicted xylanase/chitin deacetylase
[Thermoanaerobacter tengcongensis]
Length = 324
Score = 52.0 bits (123), Expect = 8e-06
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 45 RLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDV 104
+ + + K + AT+F G E E +K IV+ G+E+G H YSH N + ++ +
Sbjct: 154 KYVDILKSMDVKATFFVIGKHAEKHPELLKYIVENGNEIGLHSYSHFNMKKLKPEKMVEE 213
Query: 105 LLKSVELIKDLTGKAPTGYVAPWWEFSN----ITNELLLK 140
L K+ ++I + TG PT + P+ +++ I+N L LK
Sbjct: 214 LYKTQQIIVEATGIKPTLFRPPFGAYNSTLIEISNALGLK 253
>ref|NP_302315.1| (NC_002677) carbohydrate degrading enzyme [Mycobacterium leprae]
emb|CAB39825.1| (AL049491) putative hydrolase [Mycobacterium leprae]
emb|CAC30905.1| (AL583923) carbohydrate degrading enzyme [Mycobacterium leprae]
Length = 291
Score = 50.8 bits (120), Expect = 2e-05
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 45 RLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDV 104
RL+++ K AT+F G+ + T K IVDAG E+G+H + H N ++ + D
Sbjct: 63 RLVQILKDNDAKATFFLIGNKVATNPAGAKRIVDAGMEIGSHTWEHPNMTMLSTEDIADQ 122
Query: 105 LLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPY 157
++ I TG+ PT W ++NE + + +Y + + D P+
Sbjct: 123 FSRANHAITVATGRTPT----LWRPAGGLSNEAVRQVAGRYGQAEILWDVIPF 171
>ref|NP_437328.1| (NC_003078) putative enzyme, similar to uricase protein
[Sinorhizobium meliloti]
emb|CAC49188.1| (AL603644) putative enzyme, similar to uricase protein
[Sinorhizobium meliloti]
Length = 471
Score = 49.7 bits (117), Expect = 4e-05
Identities = 37/143 (25%), Positives = 62/143 (42%), Gaps = 7/143 (4%)
Query: 37 FAGEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAM 96
+ G RL +LF +PAT + +++ Q+ + DAG E+ +HG
Sbjct: 74 YGARAGFWRLHRLFTDRQIPATVYGVATALKRSPAQVAAMQDAGWEIASHGLKWIEHKDF 133
Query: 97 TAKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLL---KHGFKYDHSLMHND 153
A++E + +++ L +TG+ PTG W+ N L L GF Y +D
Sbjct: 134 DAERERAEIAEAIRLHTIVTGERPTG----WYTGRCSVNTLDLVTEAGGFDYVSDAYADD 189
Query: 154 FTPYYVRVGDSWSKIDYSLEAKD 176
++ G I Y+L+A D
Sbjct: 190 LPYWHEHAGRHQLVIPYTLDAND 212
>ref|NP_469781.1| (NC_003212) similar to endo-1,4-beta-xylanase [Listeria innocua]
emb|CAC95669.1| (AL596164) similar to endo-1,4-beta-xylanase [Listeria innocua]
Length = 466
Score = 48.1 bits (113), Expect = 1e-04
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEED 103
P +L K+Y + AT+F G S+ +K +D GH+VG+H + H ++ ++ +
Sbjct: 282 PGVLDTLKRYDVKATFFVLGSSVVQNPGLVKRELDEGHQVGSHSWDHPQLTKLSEQEVYN 341
Query: 104 VLLKSVELIKDLTGKAPTGYVAPW 127
+L++ +++ D TG PT P+
Sbjct: 342 QILQTQKVVFDQTGYFPTTMRPPY 365
>ref|NP_244770.1| (NC_002570) endo-1,4-beta-xylanase [Bacillus halodurans]
dbj|BAB07621.1| (AP001520) endo-1,4-beta-xylanase [Bacillus halodurans]
Length = 319
Score = 48.1 bits (113), Expect = 1e-04
Identities = 33/152 (21%), Positives = 70/152 (45%), Gaps = 26/152 (17%)
Query: 45 RLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENP-IAMTAKQEED 103
+LL L +Y + AT+F+ ++ + + IV GH + HG +H+ +A+ +
Sbjct: 138 KLLTLLNEYEMKATFFTLSPKVKQYPDIANQIVADGHAIALHGVTHQRERFYASAQSPLN 197
Query: 104 VLLKSVELIKDLTGKAPTGYVAPWWEFSNITNE---LLLKHGFKYDHSLMHNDFTPYYVR 160
++++ + ++ +TG P+ + ++T E +L +HGFK
Sbjct: 198 EMVENQQTVESVTGVKTNLIRTPYGSYPHLTTEQRNILKEHGFKL--------------- 242
Query: 161 VGDSWSKIDYSLEAKDWMKPLIRGVETDLVEI 192
W D+++++ DW R VET + ++
Sbjct: 243 ----W---DWNVDSYDWKLRNERFVETTIKQL 267
>ref|NP_389552.1| (NC_000964) alternate gene name: ymxI~similar to deacetylase
[Bacillus subtilis]
sp|P50850|YLXY_BACSU Hypothetical protein ylxY
pir||H69882 deacetylase homolog ylxY - Bacillus subtilis
emb|CAB13543.1| (Z99112) alternate gene name: ymxI~similar to deacetylase [Bacillus
subtilis]
Length = 319
Score = 47.8 bits (112), Expect = 1e-04
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 39 GEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTA 98
G + ++L + +K+ + AT+F G+ + + K I GHE+G H Y+H + +T
Sbjct: 141 GNEYLEKMLPILQKHQVKATFFLEGNWVRNNVQLAKKIAKDGHEIGNHSYNHPDMSKLTT 200
Query: 99 KQEEDVLLKSVELIKDLTGKAPTGYVAPWWEF 130
+ + L K+ E I+ G P + P F
Sbjct: 201 GRISEQLDKTNEQIEQTIGVKPKWFAPPSGSF 232
>ref|NP_625422.1| (NC_003888) putative secreted deacetylase [Streptomyces coelicolor
A3(2)]
emb|CAC13081.1| (AL445503) putative secreted deacetylase [Streptomyces coelicolor
A3(2)]
Length = 282
Score = 47.8 bits (112), Expect = 1e-04
Identities = 27/102 (26%), Positives = 49/102 (47%), Gaps = 9/102 (8%)
Query: 26 EDSPDDISRGLFAGEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGA 85
+D PD S PR L + AT+F G + + +V GHE+
Sbjct: 65 DDGPDPAST---------PRFLDTLDGLGVRATFFVLGENALRHPALTRELVRRGHELAV 115
Query: 86 HGYSHENPIAMTAKQEEDVLLKSVELIKDLTGKAPTGYVAPW 127
HG++H+ P + ++ LL++V ++ +++G+AP Y P+
Sbjct: 116 HGWTHDRPWWPSPARDTRELLRAVRVVDEVSGRAPRWYRPPY 157
>ref|NP_627904.1| (NC_003888) putative hydrolase [Streptomyces coelicolor A3(2)]
pir||T36647 probable hydrolase - Streptomyces coelicolor
emb|CAB44415.1| (AL078610) putative hydrolase [Streptomyces coelicolor A3(2)]
Length = 278
Score = 47.8 bits (112), Expect = 1e-04
Identities = 38/138 (27%), Positives = 61/138 (43%), Gaps = 17/138 (12%)
Query: 24 GGEDSPDDIS--RGLFAGEVGI-------------PRLLKLFKKYHLPATWFSPGHSIET 68
GGE P D+S AG G+ P++L L ++Y + AT+ G E
Sbjct: 73 GGEAKPVDVSIAHASDAGPNGVNITIDDGPDPAWTPQVLDLLEEYGVKATFCMTGLQAEA 132
Query: 69 FSEQMKMIVDAGHEVGAHGYSHENPI--AMTAKQEEDVLLKSVELIKDLTGKAPTGYVAP 126
+ +K +V AGH + H SH+ + A Q +++L +I+ G P Y AP
Sbjct: 133 HPDLVKDVVAAGHRLCDHTVSHDTAMDKKSEAYQAKEILDAERMIIEASGGVRPVYYRAP 192
Query: 127 WWEFSNITNELLLKHGFK 144
F+ + +L HG +
Sbjct: 193 GGAFTPYSRKLAASHGMR 210
>ref|NP_625234.1| (NC_003888) putative oligosaccharide deacetylase [Streptomyces
coelicolor A3(2)]
emb|CAB63185.1| (AL133469) putative oligosaccharide deacetylase [Streptomyces
coelicolor A3(2)]
Length = 201
Score = 47.4 bits (111), Expect = 2e-04
Identities = 24/94 (25%), Positives = 48/94 (50%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEED 103
P++L KY + AT+F G + + + + D GH VG H +SH +T ++
Sbjct: 30 PKILDTLAKYEVRATFFVCGEMADYNRDLLTRMADEGHVVGNHTWSHPLLTKLTRRRIRS 89
Query: 104 VLLKSVELIKDLTGKAPTGYVAPWWEFSNITNEL 137
+ ++ E+++ G+AP + AP+ ++ +L
Sbjct: 90 EMERTSEVVEQAYGEAPRWFRAPYGAWNRAAFQL 123
>ref|NP_616012.1| (NC_003552) polysaccharide deacetylase [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04492.1| (AE010773) polysaccharide deacetylase [Methanosarcina acetivorans
str. C2A] [Methanosarcina acetivorans C2A]
Length = 574
Score = 47.0 bits (110), Expect = 3e-04
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 45 RLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQE--- 101
+ L L ++++ AT+F ++ + ++ I + GHE+ HG H + K+
Sbjct: 322 KTLDLLDEFNITATFFIVADVVKRYPGLIESISEKGHEIACHGADHRCVVDTKTKEPLID 381
Query: 102 ----EDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHN 152
E L + +L++ +G+ GY AP + + L K GFKYD S+ N
Sbjct: 382 VEEFEVTTLNAKKLLERTSGQEVIGYRAPNGAVTGWMLDSLEKIGFKYDSSVSVN 436
>ref|NP_241109.1| (NC_002570) BH0243~unknown conserved protein [Bacillus halodurans]
dbj|BAA90851.1| (AB031212) YbaN [Bacillus halodurans]
dbj|BAB03962.1| (AP001507) BH0243~unknown conserved protein [Bacillus halodurans]
Length = 253
Score = 45.8 bits (107), Expect = 6e-04
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 57 ATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVLLKSVELIKDLT 116
AT+F E E +++I +AG+ +G+HGY ++N ++ L +S ++I +T
Sbjct: 86 ATFFISASWAERHPELVELIQEAGYHIGSHGYQYKNYTTWEDEKIRKDLRQSQQVISSIT 145
Query: 117 GKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMH 151
G+ PT P +F ++ +L YD++++H
Sbjct: 146 GEKPTLLRPPNGDF----DKRVLNLAESYDYTVVH 176
>ref|NP_463944.1| (NC_003210) similar to endo-1,4-beta-xylanase [Listeria
monocytogenes EGD-e]
emb|CAC98494.1| (AL591975) similar to endo-1,4-beta-xylanase [Listeria
monocytogenes]
Length = 466
Score = 45.4 bits (106), Expect = 7e-04
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEED 103
P +L K++++ AT+F G S+ +K ++ GH+VG+H + H + ++ +
Sbjct: 282 PGVLDTLKRHNVKATFFVLGSSVIQNPGLVKRELEEGHQVGSHSWDHPQLTKQSTQEVYN 341
Query: 104 VLLKSVELIKDLTGKAPTGYVAPW 127
+LK+ + + D TG PT P+
Sbjct: 342 QILKTQKAVFDQTGYFPTTMRPPY 365
>ref|NP_241761.1| (NC_002570) polysaccharide deacetylase (nodulation protein NodB)
[Bacillus halodurans]
dbj|BAB04614.1| (AP001510) polysaccharide deacetylase (nodulation protein NodB)
[Bacillus halodurans]
Length = 264
Score = 45.4 bits (106), Expect = 7e-04
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 46 LLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVL 105
+L + K +PAT+F GH +ET E ++ +V GH VG H + H + ++ ++ E L
Sbjct: 87 ILDVLKDKQVPATFFVTGHYLETEQELIRRMVGEGHIVGNHSWHHPSLPNVSDERLEREL 146
Query: 106 LKSVELIKDLTGKAPTGYV-APWWEFSNITNELLLKHGF 143
K ++TG Y+ P EFS + L K G+
Sbjct: 147 EKVKGKFTEITGIQEMHYLRPPRGEFSERSLALSEKLGY 185
>ref|NP_348998.1| (NC_003030) Predicted xylanase/chitin deacetylase [Clostridium
acetobutylicum]
gb|AAK80338.1|AE007738_6 (AE007738) Predicted xylanase/chitin deacetylase [Clostridium
acetobutylicum]
Length = 255
Score = 45.4 bits (106), Expect = 7e-04
Identities = 26/100 (26%), Positives = 47/100 (47%)
Query: 45 RLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDV 104
++L + KY+ AT+F G +E + + K I G+E+G H Y H + M+ + +
Sbjct: 73 KILDVLDKYNAKATFFLIGRWVEDYPNETKEIYRRGNEIGNHSYKHLDMTTMSKQNIKKD 132
Query: 105 LLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFK 144
+ + E I +TG + P + + T E+ G K
Sbjct: 133 IAMADEKIYSVTGTKTKVFRCPSGSYDSSTIEVAESTGHK 172
>ref|NP_655702.1| (NC_003995) Polysac_deacet, Polysaccharide deacetylase [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 234
Score = 45.4 bits (106), Expect = 7e-04
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 43 IPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEE 102
+ ++L L YH AT+F G+ +E + IV +GH+VG H YSH + T +
Sbjct: 60 VKQILPLLDTYHAKATFFLIGNELEKNLSLGEAIVQSGHQVGNHTYSHNRMVFKTPSYIK 119
Query: 103 DVLLKSVELIK 113
+ + K+ LI+
Sbjct: 120 EEIEKTNSLIR 130
>ref|NP_355372.1| (NC_003062) AGR_C_4393p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_533093.1| (NC_003304) chitooligosaccharide deacetylase [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK88157.1| (AE008156) AGR_C_4393p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL43409.1| (AE009190) chitooligosaccharide deacetylase [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 238
Score = 45.4 bits (106), Expect = 7e-04
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAK---- 99
P +L++ K+ + AT+F G E Q ++IV+ GH+VG H Y+H N + M
Sbjct: 63 PDVLRILKERGIKATFFLTGKETEENLSQARLIVNDGHQVGNHSYTHSNMMFMGPARIRD 122
Query: 100 --QEEDVLLKSVELIKDLTGKAPTG---YVAPWW 128
+ DV +++ ++ + P G PW+
Sbjct: 123 EIERTDVAIRAAGYEGEIMFRPPYGKKLLTLPWY 156
>ref|NP_242168.1| (NC_002570) BH1302~unknown conserved protein [Bacillus halodurans]
dbj|BAB05021.1| (AP001511) BH1302~unknown conserved protein [Bacillus halodurans]
Length = 239
Score = 45.1 bits (105), Expect = 0.001
Identities = 19/49 (38%), Positives = 30/49 (60%)
Query: 46 LLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPI 94
+L + ++ + AT+F G IE E+ + IV AGHE+G H YSH+ +
Sbjct: 62 ILSILQEEDIKATFFLTGREIEEHMEEAQKIVAAGHEIGNHSYSHQRMV 110
>ref|NP_623580.1| (NC_003869) predicted xylanase/chitin deacetylase
[Thermoanaerobacter tengcongensis]
gb|AAM25184.1| (AE013152) predicted xylanase/chitin deacetylase
[Thermoanaerobacter tengcongensis]
Length = 293
Score = 45.1 bits (105), Expect = 0.001
Identities = 25/101 (24%), Positives = 54/101 (52%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEED 103
PR+L + K+ + A +F G ++ ++ +K +V+ GH VG H +H + + ++ ++
Sbjct: 124 PRILDVLKENGVKAAFFVTGPYVKQQADLVKRMVEEGHIVGNHTVNHPSLPTLPDEKVKE 183
Query: 104 VLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFK 144
+L ++ +DLTG+ + P E+S T + G++
Sbjct: 184 EILGLEKMFEDLTGQKMKYFRPPRGEYSERTLYITKSLGYR 224
>gb|AAC43596.1| (U29668) orfA; Method: conceptual translation supplied by author
[Bacillus subtilis]
Length = 269
Score = 45.1 bits (105), Expect = 0.001
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 39 GEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTA 98
G + ++L + +K+ + AT+F G+ + + K I GHE+G H Y+H + +T
Sbjct: 141 GNEYLEKMLPILQKHQVKATFFLEGNWVRNNVQLAKKIAKDGHEIGNHSYNHPDMSKLTT 200
Query: 99 KQEEDVLLKSVELIKDLTGKAP 120
+ + L K+ E I+ G P
Sbjct: 201 GRISEQLDKTNEQIEQTIGVKP 222
>ref|NP_630282.1| (NC_003888) putative deacetylase (putative secreted protein)
[Streptomyces coelicolor A3(2)]
pir||T35485 probable deacetylase - Streptomyces coelicolor
emb|CAA22512.1| (AL034492) putative deacetylase (putative secreted protein)
[Streptomyces coelicolor A3(2)]
Length = 260
Score = 44.7 bits (104), Expect = 0.001
Identities = 25/77 (32%), Positives = 44/77 (56%), Gaps = 1/77 (1%)
Query: 45 RLLKLFKKYHLPATWFSPG-HSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEED 103
RLL + K+ +PAT+F G I+T+ E ++ + D GHEV +H ++H+ + +
Sbjct: 81 RLLDILKEKQVPATFFLLGKRHIDTYPELVRRMADEGHEVASHTWTHKILTDAEPDEIRE 140
Query: 104 VLLKSVELIKDLTGKAP 120
L + + I+ LTG+ P
Sbjct: 141 ELERPNKEIERLTGERP 157
>ref|NP_561743.1| (NC_003366) probable endo-1,4-beta-xylanase [Clostridium
perfringens]
dbj|BAB80533.1| (AP003188) probable endo-1,4-beta-xylanase [Clostridium
perfringens]
Length = 305
Score = 44.7 bits (104), Expect = 0.001
Identities = 32/117 (27%), Positives = 54/117 (45%), Gaps = 18/117 (15%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSI---ETFSEQMKMIVDAGHEVGAHGYSHENPI-----A 95
P +LK+ KY++ T+F G+SI + E +K IV GH +G H YSH+
Sbjct: 117 PEVLKILDKYNIKGTFFVTGNSISAGDKSKELLKQIVKNGHAIGNHTYSHDYKYLYPNRK 176
Query: 96 MTAKQEEDVLLKSVELIKDLTG--------KAPTGYVAPWWEFSNITNELLLKHGFK 144
M + K+ L+K++ G + P GY + W+ E +++ G +
Sbjct: 177 MNVNNIMSDINKNENLMKEVLGEDFSTKVVRFPGGYWS--WQDRTPMKEKMIQEGIQ 231
>dbj|BAB79692.1| (AB064264) chitin binding protein [Magnaporthe grisea]
Length = 590
Score = 44.3 bits (103), Expect = 0.002
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 20/139 (14%)
Query: 46 LLKLFKKYHLPATWFSPGHSI---------ETFSEQMKMIVDAGHEVGAHGYSHENPIAM 96
LL +FK+Y + AT+F G++I + ++ ++ ++ GH+V +H +SH+N +
Sbjct: 171 LLDIFKRYQMVATFFVTGNNIGKGMINDRTKPWAGYIQRMIAEGHQVASHTWSHQNASQL 230
Query: 97 TAKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLK----HGFKYD---HSL 149
Q + + + D+ G PT Y+ P + + LL H +D
Sbjct: 231 NDDQYRQQMHYNEIALADIIGYFPT-YMRPPYSICESNCQRLLTELGYHAIYFDLDTEGY 289
Query: 150 MHNDFTPYYVRVG-DSWSK 167
+H+ TP ++G D W K
Sbjct: 290 LHD--TPEGAQIGKDIWDK 306
>ref|NP_657340.1| (NC_003995) Polysac_deacet, Polysaccharide deacetylase [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 927
Score = 44.3 bits (103), Expect = 0.002
Identities = 29/98 (29%), Positives = 52/98 (52%), Gaps = 4/98 (4%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEED 103
P +L + K+ + A +F G + + +K I D GHE+G H + H N +A T+
Sbjct: 311 PEILDILKENKIKAAFFVLGENAQLNPSIVKRIYDEGHEIGNHTFKHPN-VADTSLLRTK 369
Query: 104 VLLKSVE-LIKDLTGKAPTGYVAPWWEFSN--ITNELL 138
V L + + LI+++TG + + P+ +N +NE+L
Sbjct: 370 VELNTTQRLIQEITGHSTVLFRPPYEADANPDSSNEIL 407
>ref|NP_269476.1| (NC_002737) putative deacetylase [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK34197.1| (AE006574) putative deacetylase [Streptococcus pyogenes M1 GAS]
Length = 424
Score = 44.3 bits (103), Expect = 0.002
Identities = 24/91 (26%), Positives = 43/91 (46%), Gaps = 1/91 (1%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEED 103
P++L + KY T+F G + K + DAGHE+ H + H N ++ + +
Sbjct: 257 PQVLDILAKYQAKGTFFMIGSKVVNNENLTKRVSDAGHEIANHTWDHPNLTNLSVSEIQH 316
Query: 104 VLLKSVELIKDLTGKAPTGYVAPWWEFSNIT 134
+ + + I+ GK P Y+ P + +N T
Sbjct: 317 QVNMTNQAIEKACGKKPR-YLRPPYGATNAT 346
>ref|NP_607478.1| (NC_003485) putative deacetylase [Streptococcus pyogenes MGAS8232]
gb|AAL97977.1| (AE010058) putative deacetylase [Streptococcus pyogenes MGAS8232]
Length = 424
Score = 44.3 bits (103), Expect = 0.002
Identities = 24/91 (26%), Positives = 43/91 (46%), Gaps = 1/91 (1%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEED 103
P++L + KY T+F G + K + DAGHE+ H + H N ++ + +
Sbjct: 257 PQVLDILAKYQAKGTFFMIGSKVVNNENLTKRVSDAGHEIANHTWDHPNLTNLSVSEIQH 316
Query: 104 VLLKSVELIKDLTGKAPTGYVAPWWEFSNIT 134
+ + + I+ GK P Y+ P + +N T
Sbjct: 317 QVNMTNQAIEKACGKKPR-YLRPPYGATNAT 346
>gb|AAM75311.1|AF454824_108 (AF454824) EF0108 [Enterococcus faecalis]
Length = 516
Score = 43.9 bits (102), Expect = 0.002
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 46 LLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEEDVL 105
LL + K ++ AT+F G ++ + K + D GHEV H YSH ++ + + +
Sbjct: 334 LLNILKTNNVKATFFMLGQMVDQNPDVAKQVHDEGHEVACHSYSHPQLNTLSTDELQSEM 393
Query: 106 LKSVELIKDLTGKAPTGYVAPW 127
K+ + I TG P P+
Sbjct: 394 NKANKAIFKATGVLPRNIRPPY 415
>ref|NP_355286.1| (NC_003062) AGR_C_4231p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_533001.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK88071.1| (AE008148) AGR_C_4231p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL43317.1| (AE009181) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 307
Score = 43.1 bits (100), Expect = 0.004
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Query: 37 FAGEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAM 96
+ G RL ++F + T + ++ E + + +AG E+ +HGY
Sbjct: 78 YGSRAGFWRLWRMFTGLGVTTTVYGVTAAMARNPEAVAAMKEAGWEIASHGYRWLEYKDF 137
Query: 97 TAKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTP 156
+ ++E ++++V L +LTG+ P G + S+ T L+++ G S + D P
Sbjct: 138 SEEEERKHIVEAVHLHTELTGERPYGMYQ--GKPSDNTLRLVMEEGGFLYSSDSYADDLP 195
Query: 157 YYVR-VGDS-WSKIDYSLEAKD 176
Y+V+ VGD + I Y+L+ D
Sbjct: 196 YWVKGVGDEPFLIIPYTLDTND 217
>ref|NP_615942.1| (NC_003552) peptidoglycan GlcNAc deacetylase [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04422.1| (AE010764) peptidoglycan GlcNAc deacetylase [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 239
Score = 42.7 bits (99), Expect = 0.005
Identities = 32/111 (28%), Positives = 48/111 (42%), Gaps = 20/111 (18%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSIE-------------TFSEQMKMIVDAGHEVGAHGYSH 90
P +L L +KY + AT+F G IE T SE +K GH + H Y H
Sbjct: 29 PCILDLLRKYGVKATFFCLGCCIEKNIAAQNHDGKYITGSEVVKRSNGEGHLIAVHSYDH 88
Query: 91 ENPIAMTAKQEEDVLLKSV----ELIKDLTGKAPTGYVAPWWEFSNITNEL 137
A+ +E++L K + +I DL GK P + P+ + N +
Sbjct: 89 R---ALPELADEEILNKELARTKNIITDLIGKTPVYFRPPYGSVDDRVNNI 136
>ref|NP_627186.1| (NC_003888) putative bi-functional transferase/deacetylase
[Streptomyces coelicolor A3(2)]
emb|CAB72208.1| (AL138851) putative bi-functional transferase/deacetylase
[Streptomyces coelicolor A3(2)]
Length = 734
Score = 42.0 bits (97), Expect = 0.008
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 17/138 (12%)
Query: 44 PRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAMTAKQEED 103
PR+L + KK+ A +F G + + ++ +VD GHEVG H ++H + + K+ +
Sbjct: 107 PRVLDVLKKHDAHAVFFVTGTMASRYPDLVERMVDEGHEVGLHTFNHPDLSFQSEKRIDW 166
Query: 104 VLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFTPYYVRVGD 163
L ++ I G + + P+ F++ M N P +G
Sbjct: 167 ELSQNQLAITGAAGVRTSLFRPPYSSFAD----------------AMDNKSWPVTEYIGG 210
Query: 164 -SWSKIDYSLEAKDWMKP 180
+ + + +++DW KP
Sbjct: 211 RGYLVVVNNTDSEDWKKP 228
>ref|NP_635677.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM39601.1| (AE012124) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 296
Score = 42.0 bits (97), Expect = 0.008
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 7/143 (4%)
Query: 37 FAGEVGIPRLLKLFKKYHLPATWFSPGHSIETFSEQMKMIVDAGHEVGAHGYSHENPIAM 96
+ G RL +LF +P T F ++ E + + A E+ +HG + +
Sbjct: 75 YGSRAGFWRLHRLFSARGVPVTVFGVATALAANPEAVAAMQSADWEIASHGLRWIDYQHV 134
Query: 97 TAKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLL---KHGFKYDHSLMHND 153
A E L +++ L +TG P G W++ N L + GF YD +D
Sbjct: 135 DAATERAHLAEAIALHTQVTGSRPLG----WYQGRTSPNTARLVAEEGGFVYDADSYADD 190
Query: 154 FTPYYVRVGDSWSKIDYSLEAKD 176
Y R G + + Y+L+ D
Sbjct: 191 VPYYDRRHGRAQLIVPYTLDVND 213
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.139 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,837,690
Number of Sequences: 1026957
Number of extensions: 9344345
Number of successful extensions: 22177
Number of sequences better than 1.0e-02: 63
Number of HSP's better than 0.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 22103
Number of HSP's gapped (non-prelim): 66
length of query: 293
length of database: 324,149,939
effective HSP length: 120
effective length of query: 173
effective length of database: 200,915,099
effective search space: 34758312127
effective search space used: 34758312127
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 97 (42.0 bits)