BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644939|ref|NP_207109.1| hypothetical protein
[Helicobacter pylori 26695]
         (122 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207109.1|  (NC_000915) hypothetical protein [Helicoba...   249  3e-66
ref|NP_223016.1|  (NC_000921) putative [Helicobacter pylori ...   214  1e-55

>ref|NP_207109.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64558 hypothetical protein HP0311 - Helicobacter pylori (strain 26695)
 gb|AAD07384.1| (AE000549) H. pylori predicted coding region HP0311 [Helicobacter
           pylori 26695]
          Length = 122

 Score =  249 bits (637), Expect = 3e-66
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   MCVLCGELISSFHWTDESDSYGIDENLKGQNALISANENARERKRARLKRVRLLNQILAF 60
           MCVLCGELISSFHWTDESDSYGIDENLKGQNALISANENARERKRARLKRVRLLNQILAF
Sbjct: 1   MCVLCGELISSFHWTDESDSYGIDENLKGQNALISANENARERKRARLKRVRLLNQILAF 60

Query: 61  YGLKINDWQGAKFVLCDKKGQSVIVNDLGDLWDKAQNLAKKEMDALDSHLLAFLNQNANA 120
           YGLKINDWQGAKFVLCDKKGQSVIVNDLGDLWDKAQNLAKKEMDALDSHLLAFLNQNANA
Sbjct: 61  YGLKINDWQGAKFVLCDKKGQSVIVNDLGDLWDKAQNLAKKEMDALDSHLLAFLNQNANA 120

Query: 121 IH 122
           IH
Sbjct: 121 IH 122



>ref|NP_223016.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71950 hypothetical protein jhp0296 - Helicobacter pylori (strain J99)
 gb|AAD05873.1| (AE001466) putative [Helicobacter pylori J99]
          Length = 122

 Score =  214 bits (546), Expect = 1e-55
 Identities = 105/120 (87%), Positives = 110/120 (91%)

Query: 1   MCVLCGELISSFHWTDESDSYGIDENLKGQNALISANENARERKRARLKRVRLLNQILAF 60
           MCVLCGELISSFHWTD SD Y  DENL+G NA+ISANENARERKRARLKRV LLNQILAF
Sbjct: 1   MCVLCGELISSFHWTDGSDGYRSDENLRGSNAVISANENARERKRARLKRVGLLNQILAF 60

Query: 61  YGLKINDWQGAKFVLCDKKGQSVIVNDLGDLWDKAQNLAKKEMDALDSHLLAFLNQNANA 120
           YGLKI DWQGAKFVLCDKKGQSVIVNDLGDLWDKAQNLAKK+MD LDS+LLAFLNQ+  A
Sbjct: 61  YGLKIGDWQGAKFVLCDKKGQSVIVNDLGDLWDKAQNLAKKKMDVLDSNLLAFLNQHTQA 120



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.320    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,801,039
Number of Sequences: 1026957
Number of extensions: 2439075
Number of successful extensions: 7770
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7768
Number of HSP's gapped (non-prelim): 2
length of query: 122
length of database: 324,149,939
effective HSP length: 98
effective length of query: 24
effective length of database: 223,508,153
effective search space: 5364195672
effective search space used: 5364195672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)