BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644940|ref|NP_207110.1| conserved hypothetical
ATP-binding protein [Helicobacter pylori 26695]
(321 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207110.1| (NC_000915) conserved hypothetical ATP-bin... 641 0.0
ref|NP_223017.1| (NC_000921) putative [Helicobacter pylori ... 593 e-169
ref|NP_485791.1| (NC_003272) hypothetical protein [Nostoc s... 154 1e-36
ref|NP_538954.1| (NC_003317) COBW PROTEIN [Brucella meliten... 154 2e-36
ref|NP_655885.1| (NC_003995) cobW, Cobalamin synthesis prot... 150 1e-35
ref|NP_104656.1| (NC_002678) hypothetical protein [Mesorhiz... 148 9e-35
ref|NP_173025.1| (NM_101441) PRLI-interacting factor L, put... 141 9e-33
ref|NP_178163.1| (NM_106696) hypothetical protein [Arabidop... 137 2e-31
ref|NP_356979.1| (NC_003063) AGR_L_2389p [Agrobacterium tum... 136 3e-31
ref|NP_387288.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 135 8e-31
ref|NP_357417.1| (NC_003063) AGR_L_3251p [Agrobacterium tum... 133 2e-30
gb|EAA03492.1| (AAAB01008717) ebiP2236 [Anopheles gambiae s... 131 9e-30
ref|NP_386793.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 130 2e-29
ref|NP_253294.1| (NC_002516) conserved hypothetical protein... 130 2e-29
ref|NP_419140.1| (NC_002696) conserved hypothetical protein... 129 6e-29
ref|NP_105867.1| (NC_002678) hypothetical protein [Mesorhiz... 128 1e-28
ref|NP_436673.1| (NC_003078) CONSERVED HYPOTHETICAL PROTEIN... 124 1e-27
ref|NP_518168.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 124 2e-27
ref|NP_463389.1| (NC_003197) putative cobalamin synthesis p... 120 2e-26
ref|NP_386976.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 118 8e-26
ref|NP_458953.1| (NC_003198) conserved hypothetical protein... 118 8e-26
sp|P24203|YJIA_ECOLI Hypothetical protein yjiA 117 2e-25
ref|NP_356155.1| (NC_003063) AGR_L_732p [Agrobacterium tume... 116 3e-25
emb|CAA86052.1| (Z37980) ORF14 [Escherichia coli] 114 1e-24
ref|XP_129218.1| (XM_129218) similar to dopamine responsive... 114 1e-24
ref|NP_598219.1| (NM_133535) dopamine responsive protein [R... 114 1e-24
gb|AAK14935.1|AF212253_1 (AF212253) HCOBP [Homo sapiens] 113 3e-24
ref|NP_541286.1| (NC_003318) LOW AFFINITY ZINC TRANSPORT ME... 111 1e-23
ref|NP_296129.1| (NC_001263) cobW protein, putative [Deinoc... 111 1e-23
gb|EAA03490.1| (AAAB01008717) agCP10329 [Anopheles gambiae ... 110 2e-23
ref|NP_485136.1| (NC_003272) hypothetical protein [Nostoc s... 110 3e-23
gb|AAH05996.1|AAH05996 (BC005996) COBW-like protein [Homo s... 109 5e-23
ref|NP_060961.2| (NM_018491) COBW-like protein [Homo sapien... 109 5e-23
ref|XP_031187.2| (XM_031187) similar to COBW-like protein [... 107 2e-22
ref|XP_165519.1| (XM_165519) hypothetical protein XP_165519... 106 3e-22
ref|NP_488762.1| (NC_003272) hypothetical protein [Nostoc s... 103 3e-21
ref|NP_443064.1| (NC_000911) 47 kD protein [Synechocystis s... 102 4e-21
gb|AAF98566.1|AC013427_9 (AC013427) Contains similarity to ... 97 2e-19
ref|NP_596245.1| (NC_003423) hypothetical protein [Schizosa... 94 2e-18
ref|NP_655632.1| (NC_003995) cobW, Cobalamin synthesis prot... 93 5e-18
ref|NP_173974.1| (NM_102414) hypothetical protein [Arabidop... 93 5e-18
ref|NP_645223.1| (NC_003923) conserved hypothetical protein... 92 1e-17
ref|NP_370974.1| (NC_002758) conserved hypothetical protein... 91 2e-17
ref|NP_213099.1| (NC_000918) cobalamin synthesis related pr... 90 4e-17
ref|NP_290967.1| (NC_002655) Z5951 gene product [Escherichi... 89 7e-17
ref|NP_242656.1| (NC_002570) BH1790~unknown conserved prote... 89 9e-17
ref|NP_539611.1| (NC_003317) COBW PROTEIN [Brucella meliten... 88 1e-16
ref|NP_418772.1| (NC_000913) orf, hypothetical protein [Esc... 87 2e-16
ref|NP_386064.1| (NC_003047) PROBABLE COBALAMINE BIOSYNTHES... 85 1e-15
ref|NP_355733.1| (NC_003062) AGR_C_5088p [Agrobacterium tum... 84 2e-15
ref|NP_599924.1| (NC_003450) COG0523:Putative GTPases (G3E ... 84 2e-15
pir||S18778 hypothetical protein (mrr 3' region) - Escheric... 84 2e-15
ref|NP_242385.1| (NC_002570) BH1519~unknown conserved prote... 84 3e-15
ref|NP_655789.1| (NC_003995) cobW, Cobalamin synthesis prot... 83 4e-15
ref|NP_442507.1| (NC_000911) CobW protein [Synechocystis sp... 83 5e-15
ref|NP_487432.1| (NC_003272) cobalamin synthesis protein [N... 82 8e-15
ref|NP_388218.1| (NC_000964) similar to hypothetical protei... 82 1e-14
ref|NP_560953.1| (NC_003366) probable cobalamin synthesis r... 82 1e-14
ref|NP_254222.1| (NC_002516) conserved hypothetical protein... 81 1e-14
sp|P29937|COBW_PSEDE CobW protein >gi|94964|pir||C38164 cob... 81 2e-14
ref|XP_088436.4| (XM_088436) hypothetical protein from clon... 80 2e-14
emb|CAC08207.1| (AJ278349) P44k protein [Rhodococcus sp. AJ... 80 3e-14
ref|NP_299116.1| (NC_002488) nitrile hydratase activator [X... 80 3e-14
ref|NP_640632.1| (NC_003919) nitrile hydratase activator [X... 80 3e-14
ref|NP_635652.1| (NC_003902) nitrile hydratase activator [X... 80 3e-14
ref|NP_357420.1| (NC_003063) AGR_L_3257p [Agrobacterium tum... 79 5e-14
ref|NP_533681.1| (NC_003305) conserved hypothetical protein... 79 5e-14
ref|NP_645466.1| (NC_003923) ORFID:MW0649~hypothetical prot... 79 7e-14
ref|NP_371211.1| (NC_002758) hypothetical protein [Staphylo... 79 7e-14
dbj|BAB62138.1| (AB054643) hypothetical protein [Hydrogenob... 79 7e-14
ref|NP_014426.1| (NC_001146) Hypothetical ORF; Ynr029cp [Sa... 78 2e-13
pir||T03530 cobW protein - Rhodobacter capsulatus >gi|24071... 77 2e-13
sp|P31521|P47K_PSECL 47 kDa protein (P47K) >gi|483198|pir||... 77 3e-13
ref|NP_241232.1| (NC_002570) BH0366~unknown conserved prote... 77 3e-13
ref|NP_232918.1| (NC_002506) conserved hypothetical protein... 76 4e-13
ref|NP_541156.1| (NC_003318) LOW AFFINITY ZINC TRANSPORT ME... 76 4e-13
ref|NP_518166.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 76 6e-13
pir||PN0571 hypothetical protein 133 - Rhodococcus erythrop... 76 6e-13
ref|NP_251635.1| (NC_002516) conserved hypothetical protein... 75 1e-12
ref|NP_619415.1| (NC_003552) hypothetical protein (multi-do... 75 1e-12
ref|NP_102976.1| (NC_002678) cobalamin synthesis protein co... 74 2e-12
ref|NP_522178.1| (NC_003296) CONSERVED HYPOTHETICAL PROTEIN... 74 2e-12
ref|XP_036310.6| (XM_036310) similar to COBW-like protein [... 74 3e-12
ref|NP_404875.1| (NC_003143) putative cobalamin synthesis p... 70 3e-11
ref|NP_629958.1| (NC_003888) putative ATP/GTP-binding prote... 68 1e-10
emb|CAC28817.1| (AL513466) conserved hypothetical protein [... 66 5e-10
ref|NP_619243.1| (NC_003552) hypothetical protein (multi-do... 65 8e-10
pir||JC2313 probable nitrile hydratase activating protein -... 65 1e-09
ref|NP_456769.1| (NC_003198) conserved hypothetical protein... 65 1e-09
ref|NP_619244.1| (NC_003552) CobW protein [Methanosarcina a... 64 2e-09
ref|NP_633096.1| (NC_003901) conserved protein [Methanosarc... 64 2e-09
ref|NP_615815.1| (NC_003552) hypothetical protein (multi-do... 64 3e-09
gb|AAD05171.1| (AF110185) unknown [Burkholderia pseudomallei] 62 7e-09
ref|NP_619251.1| (NC_003552) cobalamin biosynthesis protein... 62 7e-09
ref|NP_416678.1| (NC_000913) orf, hypothetical protein [Esc... 62 9e-09
ref|NP_288756.1| (NC_002655) orf, hypothetical protein [Esc... 62 9e-09
dbj|BAA15982.1| (D90849) ORF_ID:o369#5; similar to [SwissPr... 62 9e-09
ref|NP_274284.1| (NC_003112) CobW-related protein [Neisseri... 61 1e-08
gb|AAG44700.1|AF265442_1 (AF265442) DC36 [Homo sapiens] 61 1e-08
ref|NP_647319.1| (NC_003923) ORFID:MW2502~hypothetical prot... 61 2e-08
ref|NP_373106.1| (NC_002758) hypothetical protein [Staphylo... 61 2e-08
gb|AAG31652.1| (AF315736) PRLI-interacting factor L [Arabid... 60 3e-08
ref|NP_284193.1| (NC_003116) hypothetical protein NMA1470 [... 60 4e-08
ref|NP_254219.1| (NC_002516) hypothetical protein [Pseudomo... 60 4e-08
ref|NP_603676.1| (NC_003454) Putative GTPases (G3E family) ... 59 6e-08
ref|NP_615400.1| (NC_003552) CobW protein [Methanosarcina a... 59 1e-07
ref|NP_633645.1| (NC_003901) divalent cation transport prot... 57 2e-07
gb|AAA60521.2| (U00007) yeiR [Escherichia coli] 55 8e-07
sp|P22042|YTR2_SPIAU Hypothetical protein in TRPE 3'region ... 48 2e-04
gb|AAM75310.1|AF454824_107 (AF454824) EF0107 [Enterococcus ... 46 6e-04
emb|CAA88687.1| (Z48769) 5' end of ORF P47K [Rhodococcus sp.] 45 8e-04
gb|AAC17121.1| (AF065414) COBW-like placental protein [Homo... 44 0.003
ref|NP_560954.1| (NC_003366) conserved hypothetical protein... 43 0.004
>ref|NP_207110.1| (NC_000915) conserved hypothetical ATP-binding protein
[Helicobacter pylori 26695]
pir||H64558 conserved hypothetical ATP-binding protein HP0312 - Helicobacter
pylori (strain 26695)
gb|AAD07377.1| (AE000549) conserved hypothetical ATP-binding protein [Helicobacter
pylori 26695]
Length = 321
Score = 641 bits (1654), Expect = 0.0
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKML 60
MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKML
Sbjct: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKML 60
Query: 61 YLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLG 120
YLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLG
Sbjct: 61 YLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLG 120
Query: 121 VHFEIQSVVACVDALNAREHLTNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQAL 180
VHFEIQSVVACVDALNAREHLTNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQAL
Sbjct: 121 VHFEIQSVVACVDALNAREHLTNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQAL 180
Query: 181 NPSAEIFDKRAIDYESLFSRKNRARNFMPRMPKDSHSQGFETLSINFEGTMEWSAFGIWL 240
NPSAEIFDKRAIDYESLFSRKNRARNFMPRMPKDSHSQGFETLSINFEGTMEWSAFGIWL
Sbjct: 181 NPSAEIFDKRAIDYESLFSRKNRARNFMPRMPKDSHSQGFETLSINFEGTMEWSAFGIWL 240
Query: 241 SLLLHQYGTQILRIKGIIDIGSGFLVSINGVMHVIYPPKHILKDQNGSNLVFIMRHLERE 300
SLLLHQYGTQILRIKGIIDIGSGFLVSINGVMHVIYPPKHILKDQNGSNLVFIMRHLERE
Sbjct: 241 SLLLHQYGTQILRIKGIIDIGSGFLVSINGVMHVIYPPKHILKDQNGSNLVFIMRHLERE 300
Query: 301 KILNSLKGFKDFLGIKGFETQ 321
KILNSLKGFKDFLGIKGFETQ
Sbjct: 301 KILNSLKGFKDFLGIKGFETQ 321
>ref|NP_223017.1| (NC_000921) putative [Helicobacter pylori J99]
pir||B71950 hypothetical protein jhp0297 - Helicobacter pylori (strain J99)
gb|AAD05874.1| (AE001466) putative [Helicobacter pylori J99]
Length = 321
Score = 593 bits (1529), Expect = e-169
Identities = 296/320 (92%), Positives = 304/320 (94%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKML 60
MPKIPITLITGFLGSGKTSFLSEYLNQ DHQGVALIINEIGQAALDQRILSVQYCGEKML
Sbjct: 1 MPKIPITLITGFLGSGKTSFLSEYLNQIDHQGVALIINEIGQAALDQRILSVQYCGEKML 60
Query: 61 YLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLG 120
YLNAGCVCCNKRLDLVESLKATLNNYEW GEIL+R+IIETTGLANPAPILWT LSD FLG
Sbjct: 61 YLNAGCVCCNKRLDLVESLKATLNNYEWRGEILKRVIIETTGLANPAPILWTNLSDVFLG 120
Query: 121 VHFEIQSVVACVDALNAREHLTNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQAL 180
HFEIQSVVACVD LNA+ HLTNNEAKEQIVFADSVLLTKTDLQNDS AL KLKERIQ+L
Sbjct: 121 AHFEIQSVVACVDVLNAKTHLTNNEAKEQIVFADSVLLTKTDLQNDSTALMKLKERIQSL 180
Query: 181 NPSAEIFDKRAIDYESLFSRKNRARNFMPRMPKDSHSQGFETLSINFEGTMEWSAFGIWL 240
NPSAEIFDK+ IDYES FSRKN ARNFM RMPKDSHSQGFETLS++FEGTMEWSAFGIWL
Sbjct: 181 NPSAEIFDKKNIDYESFFSRKNGARNFMLRMPKDSHSQGFETLSVSFEGTMEWSAFGIWL 240
Query: 241 SLLLHQYGTQILRIKGIIDIGSGFLVSINGVMHVIYPPKHILKDQNGSNLVFIMRHLERE 300
SLLLHQYGTQILRIKGIIDIGS LVSINGVMHVIYPPKHILKDQNGSNLVFI+RHL RE
Sbjct: 241 SLLLHQYGTQILRIKGIIDIGSDLLVSINGVMHVIYPPKHILKDQNGSNLVFIVRHLGRE 300
Query: 301 KILNSLKGFKDFLGIKGFET 320
KILNSLKGFKDFLGIKGFET
Sbjct: 301 KILNSLKGFKDFLGIKGFET 320
>ref|NP_485791.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB73450.1| (AP003587) ORF_ID:all1751~hypothetical protein [Nostoc sp. PCC
7120]
Length = 323
Score = 154 bits (390), Expect = 1e-36
Identities = 102/312 (32%), Positives = 172/312 (54%), Gaps = 20/312 (6%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLN 63
+P+T++TG+LG+GKT+ L+ L + VA+I+NE G+ +D ++ V E++ +N
Sbjct: 10 VPVTVLTGYLGAGKTTLLNHILTYEHGKKVAVIVNEFGEVGIDNQL--VIDADEEIFEMN 67
Query: 64 AGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHF 123
GC+CC R DL+ ++N + ++IETTGLA+PAP++ T D +
Sbjct: 68 NGCICCTVRGDLIR----IISNLMKRRDKFDHLVIETTGLADPAPVIQTFFVDEDMQSQL 123
Query: 124 EIQSVVACVDALNAREHLTNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNPS 183
+ +VV VDA + +H +EA+EQI FAD +LL KTDL S L +L++RI+++N
Sbjct: 124 SLDAVVTLVDAKHIWQHWDADEAQEQIAFADVILLNKTDLVTPS-ELDELEKRIRSMNAI 182
Query: 184 AEIFDKR--AIDYESLFSRK----NRARNFMPR-MPKDSHSQGFETLSINF--EGTMEWS 234
A+I+ R + ++L K +RA P + +D+H S+ EG ++
Sbjct: 183 AKIYRTRNSELAMDALLGVKAFDLDRALEIDPNFLGEDAHEHDDTVFSVALVQEGELDGE 242
Query: 235 AFGIWLSLLLHQYGTQILRIKGIIDIGSGFLVSINGVMHVIYP--PKHILK--DQNGSNL 290
W+S LL GT I R+KGI++I + +H+I+ P + K ++ + L
Sbjct: 243 KLNAWISELLRTQGTDIFRMKGILNIAGEDNRFVFQGVHMIFDGRPDRLWKPNEKRKNEL 302
Query: 291 VFIMRHLEREKI 302
VFI R+L+ ++
Sbjct: 303 VFIGRNLDEAQL 314
>ref|NP_538954.1| (NC_003317) COBW PROTEIN [Brucella melitensis]
gb|AAL51218.1| (AE009447) COBW PROTEIN [Brucella melitensis]
Length = 388
Score = 154 bits (388), Expect = 2e-36
Identities = 120/369 (32%), Positives = 184/369 (49%), Gaps = 59/369 (15%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLN 63
IP++++TGFLGSGKT+ L+ L A+IINE G+ ++D L V+ E ++ L
Sbjct: 5 IPVSVLTGFLGSGKTTLLNRLLKDPALSDTAVIINEFGEVSIDH--LLVEQASEGVIELA 62
Query: 64 AGCVCCNKRLDLVESLKATLNNYEWHGEI--LRRIIIETTGLANPAPILWTILSDTFLGV 121
GC+CC R +LV++L ++ + G I L+R+IIETTGLA+PAP+L +I+ L
Sbjct: 63 DGCLCCTVRGELVDTLADLIDRLQT-GRIKALKRVIIETTGLADPAPVLHSIMGHPLLTQ 121
Query: 122 HFEIQSVVACVDALNAREHLTNN-EAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQAL 180
F + V+A VDA+N L N+ EA +Q AD ++LTKTDL A L LK R++ L
Sbjct: 122 VFRLDGVLATVDAVNGMATLDNHEEAVKQAAMADRIILTKTDLPEAQAGLPALKARLRTL 181
Query: 181 NPSAEIFD--KRAIDYESLF--------SRKNRARNFM---------------PRMPKDS 215
NP A+I + + Y +LF ++ R ++ P D
Sbjct: 182 NPGADILEAGEERTGYAALFECGLYNPQTKSADVRRWLKAEAYEDEHHGHVCGPDCGHDH 241
Query: 216 H----------SQGF----------ETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRIK 255
H QG+ + S+ + + S F ++L LL +G ++LR+K
Sbjct: 242 HHHDHHHDHHNDQGYAHHHHHDDAIRSFSLRHDAPIPVSTFEMFLDLLRSTHGEKLLRMK 301
Query: 256 GIIDIGS--GFLVSINGVMHVIYPPKHILKDQNGSN---LVFIMRHLEREKILNSLKGFK 310
GI+ I V I+GV + +PP + + G LV I++ L E + L F
Sbjct: 302 GIVQIAEDPDRPVVIHGVQKIFHPPARLPQWPQGKRETLLVLIVKDLP-EAYVREL--FD 358
Query: 311 DFLGIKGFE 319
FLG G +
Sbjct: 359 AFLGRPGLD 367
>ref|NP_655885.1| (NC_003995) cobW, Cobalamin synthesis protein/P47K [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 316
Score = 150 bits (380), Expect = 1e-35
Identities = 100/311 (32%), Positives = 167/311 (53%), Gaps = 21/311 (6%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALD-QRILSVQYCGEKMLYL 62
IP+T++TGFLGSGKT+ L+ L + Q +A+I+NEIG+ +D Q I++V+ E+++ +
Sbjct: 2 IPVTILTGFLGSGKTTLLNRILTENHGQKLAVIVNEIGKIGIDNQLIMNVE---EEIMEM 58
Query: 63 NAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVH 122
GC+CC R DL+ +LK L+ ++IETTGLANP PI+ T D +
Sbjct: 59 TNGCLCCTVREDLLVALKQLLDVKAEGKMDFDGLVIETTGLANPGPIIQTFFLDPVIQSA 118
Query: 123 FEIQSVVACVDALNAREHLTNN-EAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALN 181
++I VV VD+ + +H EAKEQI FAD +L+ K DL +S L E +Q +N
Sbjct: 119 YQINGVVTVVDSYHIHKHFEKGLEAKEQIAFADVILVNKLDLIEESEKENLLHE-LQGIN 177
Query: 182 PSAEIFDKRAIDYE-------SLFSRKNRARNFMPRMPKDSHSQGFETLSINFEGTMEWS 234
P+A++ D + F K+ + + + + +H +G ++ + E ++
Sbjct: 178 PTAKLIQSTNCDVDIPSLLKIQTFKTKDTLQIYPHK--EHNHLEGVKSFVLREERPLDLQ 235
Query: 235 AFGIWLSLLLHQYGTQILRIKGIIDI-GSGFLVSINGVMHVIYPPKHILKDQNG----SN 289
W+S ++ + G + R KGI+ I G + GV H ++ + + Q G S
Sbjct: 236 KLNEWMSAVVQELGEYLYRYKGILSIDGVDKRIVFQGV-HTLFAASYDREWQEGEERVSE 294
Query: 290 LVFIMRHLERE 300
+VFI + + +E
Sbjct: 295 VVFIGKDINKE 305
>ref|NP_104656.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB50442.1| (AP003002) hypothetical protein [Mesorhizobium loti]
Length = 375
Score = 148 bits (373), Expect = 9e-35
Identities = 103/349 (29%), Positives = 178/349 (50%), Gaps = 46/349 (13%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLN 63
IP++++TGFLG+GKT+ L+ L A+IINE G+ A+D L V+ + ++ L+
Sbjct: 6 IPVSVLTGFLGAGKTTLLNRLLKDPVLADTAVIINEYGEVAIDH--LLVEQASDGIIQLS 63
Query: 64 AGCVCCNKRLDLVESLKATLNNYEWHGEILR--RIIIETTGLANPAPILWTILSDTFLGV 121
GC+CC R +LV++L ++ + G I R R+I+ETTGLA+PAP+L +I++ L
Sbjct: 64 DGCLCCTVRGELVDTLADLVDRLQT-GRIARLARVIVETTGLADPAPVLQSIMAHPALVQ 122
Query: 122 HFEIQSVVACVDALNAREHL-TNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQAL 180
F + V+A VDA+N L + EA +Q+ AD ++L+K DL D+ L L+ R++ +
Sbjct: 123 AFRLDGVIALVDAVNGNATLDAHVEAVKQVAVADRIVLSKVDLVTDTGDLDTLRARLRQI 182
Query: 181 NPSAEIFDKRAI--DYESLF--------SRKNRARNFMPRMPKDSHSQG----------- 219
NP AE+ D + +LF ++ R ++ H+ G
Sbjct: 183 NPGAELLDAGHLTTGVAALFDCGLYNPATKSADVRRWLGEEAAHDHAHGHHHDGHDHGHD 242
Query: 220 --------------FETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRIKGIIDIGS--G 263
+ S+ +G + +SA ++L LL +G ++LR+KG+I++
Sbjct: 243 HDHSHDHGHRHDSRVRSYSLVHDGPVPFSAIEMFLDLLRSTHGEKLLRMKGVIELSEDPS 302
Query: 264 FLVSINGVMHVIYPPKHI---LKDQNGSNLVFIMRHLEREKILNSLKGF 309
+ I+GV +++PP + Q G+ LV I + + + F
Sbjct: 303 RPLVIHGVQKILHPPARLPAWPDGQRGTRLVLITLDMPEDYVRRLFAAF 351
>ref|NP_173025.1| (NM_101441) PRLI-interacting factor L, putative [Arabidopsis
thaliana]
gb|AAF82143.1|AC034256_7 (AC034256) Contains similarity to COBW-like protein from Homo
sapiens gb|AF257330 and contains a Viral (Superfamily 1)
RNA helicase PF|01443 domain. EST gb|AI997977 comes
from this genes. [Arabidopsis thaliana]
gb|AAK56250.1|AF367261_1 (AF367261) At1g15730/F7H2_7 [Arabidopsis thaliana]
gb|AAM16226.1| (AY093965) At1g15730/F7H2_7 [Arabidopsis thaliana]
Length = 448
Score = 141 bits (356), Expect = 9e-33
Identities = 110/354 (31%), Positives = 171/354 (48%), Gaps = 59/354 (16%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCG-EKMLY 61
+IP T+ITGFLGSGKT+ L+ L + +A+I NE G+ +D +++ Q G E ++
Sbjct: 91 RIPATIITGFLGSGKTTLLNHILTGDHGKRIAVIENEFGEVDIDGSLVAAQTAGAEDIMM 150
Query: 62 LNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGV 121
LN GC+CC R DLV + + + + I+IETTGLANPAPI+ T ++ +
Sbjct: 151 LNNGCLCCTVRGDLVRMISEMVQTKKGRFD---HIVIETTGLANPAPIIQTFYAEDEIFN 207
Query: 122 HFEIQSVVACVDALNAREHLTN-------NEAKEQIVFADSVLLTKTDLQNDSAALTKLK 174
++ VV VDA +AR HL NEA EQI +AD +++ KTDL + L +
Sbjct: 208 DVKLDGVVTLVDAKHARLHLDEVKPEGYVNEAVEQIAYADRIIVNKTDLVGE-PELASVM 266
Query: 175 ERIQALNPSAEI----FDKRAIDY---------ESLFSRKNRARNFMPRMPKDSHSQGFE 221
+RI+ +N A + + K +DY E + S N R D H G +
Sbjct: 267 QRIKTINSMAHMKRTKYGKVDLDYVLGIGGFDLERIESSVNEEEK-EDREGHDDHHHGHD 325
Query: 222 -----------------------------TLSINFEGTMEWSAFGIWLSLLLHQYGTQIL 252
++SI EG ++ +WL LL+Q I
Sbjct: 326 CHDHHNEHEHEHEHEHHHSHDHTHDPGVGSVSIVCEGDLDLEKANMWLGALLYQRSEDIY 385
Query: 253 RIKGIIDIGSGFLVSINGVMHVIY---PPKHILKDQNGSN-LVFIMRHLEREKI 302
R+KGI+ + + +H I+ P + KD+ +N +VFI ++L RE++
Sbjct: 386 RMKGILSVQDMDERFVFQGVHEIFEGSPDRLWRKDETRTNKIVFIGKNLNREEL 439
>ref|NP_178163.1| (NM_106696) hypothetical protein [Arabidopsis thaliana]
gb|AAF27129.1|AC018849_17 (AC018849) hypothetical protein; 58060-60358 [Arabidopsis thaliana]
Length = 444
Score = 137 bits (344), Expect = 2e-31
Identities = 106/360 (29%), Positives = 175/360 (48%), Gaps = 59/360 (16%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCG-EKMLY 61
+IP T+ITGFLGSGKT+ L+ L + + +A+I NE G+ +D +++ + G E ++
Sbjct: 88 RIPATIITGFLGSGKTTLLNHILTRDHGKRIAVIENEFGEVDIDGSLVASKSIGAEDIVM 147
Query: 62 LNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGV 121
LN GC+CC R DLV + +N + + I+IETTGLANPAPI+ T ++ +
Sbjct: 148 LNNGCLCCTVRGDLVRMIGELVNTKKGKFD---HIVIETTGLANPAPIIQTFYAEEEIFN 204
Query: 122 HFEIQSVVACVDALNAREHLTN-------NEAKEQIVFADSVLLTKTDLQNDSAALTKLK 174
++ VV VDA +AR HL NEA EQI +AD +++ KTDL + A L +
Sbjct: 205 DVKLDGVVTLVDAKHARLHLDEVKPEGVVNEAVEQIAYADRIIVNKTDLVGE-AELGSVV 263
Query: 175 ERIQALNPSAEIFDKR-------------AIDYESLFSRKNR------------------ 203
+RI+ +N A++ + D E + S N
Sbjct: 264 QRIKTINSMAQMTRTKYGNVDLDYVLGIGGFDLERIESSVNEDDKGDHHDHDHDHHHDHN 323
Query: 204 ---------ARNFMPRMPKDSHSQGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRI 254
+ +H G ++SI EG+++ +WL LL + I R+
Sbjct: 324 HDHDHHHHDGHDHHHHSHDHTHDPGVSSVSIVCEGSLDLEKANMWLGTLLMERSEDIYRM 383
Query: 255 KGIIDIGSGFLVSINGVMHVIY--PPKHI--LKDQNGSNLVFIMRHLEREKILNSLKGFK 310
KG++ + + + +H I+ P + +++ + +VFI ++L RE++ KGFK
Sbjct: 384 KGLLSVHTMEERFVFQGVHDIFQGSPDRLWGREEERVNKIVFIGKNLNREEL---EKGFK 440
>ref|NP_356979.1| (NC_003063) AGR_L_2389p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_534129.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK89764.1| (AE008321) AGR_L_2389p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL44445.1| (AE009292) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 411
Score = 136 bits (343), Expect = 3e-31
Identities = 89/316 (28%), Positives = 165/316 (52%), Gaps = 41/316 (12%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYL 62
+IP+++ITGFLG+GK++ L+ L + A+IINE G ++D + V+ GE ++ L
Sbjct: 42 RIPVSIITGFLGAGKSTLLNRLLKDPEMSDAAIIINEFGDVSIDHML--VESAGEGIIEL 99
Query: 63 NAGCVCCNKRLDLVESLKATLNNYEWHGEI--LRRIIIETTGLANPAPILWTILSDTFLG 120
GC+CC R +LV++L ++ + G++ ++R++IETTGLA+PAP++ +++ + +
Sbjct: 100 AEGCLCCTVRGELVDTLAELIDGIQT-GKLKPVKRVVIETTGLADPAPVMQSVMGNPVIA 158
Query: 121 VHFEIQSVVACVDALNAREHLTNN-EAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQA 179
+F + ++ VDA+N L N+ EA +Q AD +++TK L D++A+ L R++A
Sbjct: 159 QNFVLNGMITVVDAVNGLSTLDNHEEAVKQAAVADRLVMTKRTLA-DASAIAALTARLEA 217
Query: 180 LNPSAEIFDKRAIDYESL---------FSRKN-----------------------RARNF 207
LNP A I D D+ + S KN A
Sbjct: 218 LNPRATIEDGDKADWSAAGLLDNGLYDVSSKNADVGRWLGEESGHGHHDHDHDHDHAHGH 277
Query: 208 MPRMPKDSHSQGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRIKGIIDIGS--GFL 265
+ H + SI + ++ A +++ LL +G ++LR+K I+ + G
Sbjct: 278 HHHHDVNRHDASIRSFSIIHDQPIDPMAIDMFVDLLRSAHGEKLLRMKAIVKLSDNPGRP 337
Query: 266 VSINGVMHVIYPPKHI 281
+ ++GV ++ + P+ +
Sbjct: 338 LVLHGVQNIFHTPERL 353
>ref|NP_387288.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC47761.1| (AL591793) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 329
Score = 135 bits (339), Expect = 8e-31
Identities = 95/317 (29%), Positives = 161/317 (49%), Gaps = 30/317 (9%)
Query: 5 PITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLNA 64
P+T++TG+LG+GKT+ L+ L++ + A+I+NE G+ +D + + E++ +N
Sbjct: 9 PVTVLTGYLGAGKTTLLNRILSEPHGKKFAVIVNEFGEVGIDNDL--IVDADEEVFEMNN 66
Query: 65 GCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHFE 124
GC+CC R DL+ ++A + E IL IETTGLA+PAP+ T D +
Sbjct: 67 GCICCTVRGDLIRIIEALMRRRERFDGIL----IETTGLADPAPVAQTFFVDEDVRSKTR 122
Query: 125 IQSVVACVDALNAREHLTN-NEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNPS 183
+ S++ VDA + + +EA+EQ+ FAD+++L KTDL + L +++RI+ +NP+
Sbjct: 123 LDSIITVVDAKHLLGEIDRAHEAQEQLAFADTIILNKTDLVSPE-GLQAVEDRIRRINPT 181
Query: 184 -------------AEIFDKRAIDYESLFSRKNRARNFMPRMPKDSHSQGFETLSINFEGT 230
A + D+ A D + + + +F+ H + S+
Sbjct: 182 AGILKTQRCNLEIASLLDRNAFDLDRILEVE---PDFLEADHDHEHDDHVASFSLVERRP 238
Query: 231 MEWSAFGIWLSLLLHQYGTQILRIKGIIDI-GSGFLVSINGVMHVIYPPKHILKDQNG-- 287
++ F WL +GT +LR+KGII G + GV H++ H + G
Sbjct: 239 VDPEKFFRWLQTTARAFGTDMLRMKGIIAFAGDTDRYVVQGV-HMLVEGDHQRPWKEGEE 297
Query: 288 --SNLVFIMRHLEREKI 302
S LVFI R+L ++ I
Sbjct: 298 RVSRLVFIGRNLPKDVI 314
>ref|NP_357417.1| (NC_003063) AGR_L_3251p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_533684.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK90202.1| (AE008365) AGR_L_3251p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL44000.1| (AE009248) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 383
Score = 133 bits (335), Expect = 2e-30
Identities = 98/313 (31%), Positives = 156/313 (49%), Gaps = 50/313 (15%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLN 63
+P+TL+TGFLG+GKT+ L+E L + A+I+NE G +D + V+ E+ +
Sbjct: 37 VPVTLLTGFLGAGKTTLLNELLAAPAMRDAAVIVNEFGSVPIDHGL--VRTGSERYFHTT 94
Query: 64 AGCVCCNKRLDLVESLKATLNNYEWHGEILR-------RIIIETTGLANPAPILWTILS- 115
GC+CC D+ SL YE H L R++IETTGLA+PAPI+ ++++
Sbjct: 95 TGCICCTASSDIRTSL------YELHQVSLEGVMPEISRVVIETTGLADPAPIINSLIAG 148
Query: 116 --------DTFLGVHFEIQSVVACVDALNAREHLTNN-EAKEQIVFADSVLLTKTDLQND 166
D + HF + VV D ++ R L + E +Q+ FAD ++LTKTDL D
Sbjct: 149 GTPALGLRDHIVARHFHLSGVVTVFDVISGRAMLDSFIEGWKQLAFADHIVLTKTDLA-D 207
Query: 167 SAALTKLKERIQALNPSAEIFDKRAIDYE--SLFSRKN-----RARNFMPRMPKDS---- 215
+AA+ + + + LNP+A + D+ A D++ SLFS K+ + + + D
Sbjct: 208 AAAIDQ--KSLTDLNPAAHLHDRNAADFDLMSLFSTKDYSLHGKTEDVPGWLAADRLSLH 265
Query: 216 ---------HSQGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRIKGIIDIGSG--F 264
H G E + F+G ++ A +L L+ + +LR+KGI
Sbjct: 266 AGHDHDINRHGAGVEAFDLTFDGALDPQAIVTFLELVTSNVHSGLLRLKGIFGATDDPER 325
Query: 265 LVSINGVMHVIYP 277
V + V H +YP
Sbjct: 326 PVVAHAVQHRLYP 338
>gb|EAA03492.1| (AAAB01008717) ebiP2236 [Anopheles gambiae str. PEST]
Length = 325
Score = 131 bits (330), Expect = 9e-30
Identities = 94/315 (29%), Positives = 158/315 (49%), Gaps = 43/315 (13%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYL 62
+IP+TL+TGFLGSGKT+ L+ ++ Q + A++INE G LD + VQ E+++ L
Sbjct: 5 RIPVTLLTGFLGSGKTTLLNHWVKQPELGECAVLINEFGSVGLDHHL--VQQVDEQVVLL 62
Query: 63 NAGCVCCNKRLDLVESLKAT-LNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGV 121
++GC+CC+ + LVE+L+ + + + +R+IIETTGLA+PAP+L+T+ + F+
Sbjct: 63 DSGCICCSVQGSLVEALQGLFMKAIQRKIKPFKRLIIETTGLADPAPVLFTLREEGFIAQ 122
Query: 122 HFEIQSVVACVDALNAREHL-TNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQAL 180
+ V VDA + + L EA +Q+ AD ++++K DL D L +++ ++ AL
Sbjct: 123 RYRFDGTVTVVDAGHIEQQLAAQYEAVKQVALADLLVVSKGDLV-DEETLARVEAQLAAL 181
Query: 181 NPSAEI-------------------FDKRAIDYESLFS-------RKNRARNFMPRM--- 211
NP+A I + D L + ++ A P+M
Sbjct: 182 NPAAPIERVSNGVLSPAVLEKLGAYNEAAGRDVRQLLAWLRTESPKQGLASPMQPKMKPF 241
Query: 212 --------PKDSHSQGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRIKGIIDI-GS 262
P E+ S+ ++ S + + QYG +LR+KGI+ + G
Sbjct: 242 AAKVGTAAPTHFEHGNIESFSLRIGEPLKPSRLLAAIDAVQAQYGDALLRLKGILQLEGE 301
Query: 263 GFLVSINGVMHVIYP 277
V I+GV +YP
Sbjct: 302 SQPVVIHGVHGQLYP 316
>ref|NP_386793.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC47266.1| (AL591791) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 381
Score = 130 bits (327), Expect = 2e-29
Identities = 89/323 (27%), Positives = 165/323 (50%), Gaps = 46/323 (14%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKML 60
M +P++++TGFLG+GKT+ L+ L A+IINE G ++D L V+ + ++
Sbjct: 5 MRVVPVSILTGFLGAGKTTLLNRVLKDPALADTAVIINEFGDVSIDH--LLVEASSDGVI 62
Query: 61 YLNAGCVCCNKRLDLVESLKATLNNYEWHGEI--LRRIIIETTGLANPAPILWTILSDTF 118
L+ GC+CC R +LV++L ++ + G I L+R++IETTGLA+PAP+L ++L +
Sbjct: 63 ELSDGCLCCTVRGELVDTLADLMDRMQT-GRIKPLKRVVIETTGLADPAPVLQSVLGNPV 121
Query: 119 LGVHFEIQSVVACVDALNAREHLTNN-EAKEQIVFADSVLLTKTDLQNDSAALTKLKERI 177
+ +F + VV VDA+N + + N+ EA +Q+ AD ++++K+ L D + +L+ R+
Sbjct: 122 IAQNFRLDGVVTVVDAVNGEQTIANHVEAMKQVAVADRLVISKSGLAKDD-GVGRLEARL 180
Query: 178 QALNPSAEIFD-------KRAIDYESLFSRKNRARNFMPRMPKDSHSQG----------- 219
+ LNP A I D + + L+ + + + ++H+ G
Sbjct: 181 RDLNPRAPIIDGDTEEAGRADLFACGLYDATTKVADVGRWLQDEAHADGHGHVHDHHHED 240
Query: 220 -------------------FETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRIKGIIDI 260
+ SI + +E A +++ LL +G ++LR+K I+ +
Sbjct: 241 GHGHGHHHHHHDVNRHGSDIRSFSIVHDRPIEPMALEMFIDLLRSAHGEKLLRMKAIVSV 300
Query: 261 GSG--FLVSINGVMHVIYPPKHI 281
V ++GV V + P+ +
Sbjct: 301 ADNPERPVVLHGVQTVFHAPERL 323
>ref|NP_253294.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||F83070 conserved hypothetical protein PA4604 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG07992.1|AE004874_5 (AE004874) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 334
Score = 130 bits (327), Expect = 2e-29
Identities = 89/272 (32%), Positives = 145/272 (52%), Gaps = 21/272 (7%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDH-QGVALIINEIGQAALDQRILSVQYCGEKMLYL 62
IP+T++TGFLG+GKT+ L +YL Q +H +A+I NE + +D ++L V+ +++ L
Sbjct: 12 IPVTVLTGFLGAGKTTLL-KYLLQAEHGMKIAVIENEYSETPIDGQLLGVEPV--QVMTL 68
Query: 63 NAGCVCCNKRLDLVESLKATLNNYEWHGEI-LRRIIIETTGLANPAPILWTILSDTFLGV 121
+ GCVCC+ DL ++L L + +GEI R++IE TGLA+PAP+ T +D L
Sbjct: 69 SNGCVCCSINTDLEKALFLLLERRD-NGEIDFDRLVIECTGLADPAPVAQTFFADEELCQ 127
Query: 122 HFEIQSVVACVDALNAREHLTNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALN 181
+ + ++ VDA NA HL A+ Q+ FAD +L++KTDL D+A L +R+Q +N
Sbjct: 128 RYVLDGIITLVDAANAERHLQETIAQAQVGFADRILVSKTDLV-DAATFEALGQRLQRIN 186
Query: 182 -------------PSAEIFDKRAIDYESLFSRKNRARNFMPRMPKDSHSQGFETLSINFE 228
A + D R + + R KDS + TL + +
Sbjct: 187 RRALVHVVEHGRIDLAHLLDVRGFNLNADLGPGIGLRPLRAVAAKDSRDR-IGTLVLRSD 245
Query: 229 GTMEWSAFGIWLSLLLHQYGTQILRIKGIIDI 260
++ ++ LL +G +LR KG+++I
Sbjct: 246 TPLDLERLSEFMDDLLQWHGNSLLRYKGVLNI 277
>ref|NP_419140.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK22308.1| (AE005705) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 365
Score = 129 bits (323), Expect = 6e-29
Identities = 102/354 (28%), Positives = 160/354 (44%), Gaps = 61/354 (17%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYL 62
KIP+T++TG+LG+GKT+ L+ L + + A+I+NE G+ +D + V E++ +
Sbjct: 10 KIPVTVLTGYLGAGKTTLLNRILTEEHGKRYAVIVNEFGEVGIDNDL--VVGADEEVFEM 67
Query: 63 NAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVH 122
N GCVCC R DL+ L+ + II+ETTGLA+P P+ T D +
Sbjct: 68 NNGCVCCTVRGDLIRVLQGLMKRKGG----FDAIIVETTGLADPGPVAQTFFVDDDVKAR 123
Query: 123 FEIQSVVACVDALNAREHLTNN-EAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALN 181
+ SV A VDA + L+++ EA EQI FAD ++L KTDL ++ L ++ RI+ +N
Sbjct: 124 TALDSVTAVVDAKHILLRLSDSKEAVEQIAFADQIVLNKTDLVSED-DLRHVEARIRRIN 182
Query: 182 PSA-------------EIFDKRAIDYESLFSRKNRARNFMPRMP---------------- 212
P A I K + D E + + N P
Sbjct: 183 PLAPIHRAQRSNVPLDAILGKHSFDLERITDLEPDFLNPAHGEPGHVHDEHCDHHHHHDH 242
Query: 213 --------------------KDSHSQGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQIL 252
D H G + +S+ + ++ WL+ LL + G IL
Sbjct: 243 DHVHDEHCGHDHHHHHHDHKSDVHDDGVKGISLTLDKPVDGQKITAWLNDLLARRGPDIL 302
Query: 253 RIKGIIDIGSGFLVSINGVMHVI----YPPKHILKDQNGSNLVFIMRHLEREKI 302
R KGIID+ + +H+I + KD+ S +VFI R L+ ++
Sbjct: 303 RAKGIIDVKGEDKRLVFQAVHMILEGDFQRPWTDKDKRYSRMVFIGRDLDEAEL 356
>ref|NP_105867.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
dbj|BAB51653.1| (AP003005) hypothetical protein [Mesorhizobium loti]
Length = 435
Score = 128 bits (321), Expect = 1e-28
Identities = 105/350 (30%), Positives = 169/350 (48%), Gaps = 56/350 (16%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYL 62
+IP+T++TG+LG+GKT+ L+ L++ + A+I+NE G+ +D + + E++ +
Sbjct: 89 QIPVTVLTGYLGAGKTTLLNRILSENHGRRYAVIVNEFGEIGIDNDL--IVESDEEIYEM 146
Query: 63 NAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVH 122
N GCVCC R DL+ ++ + I++ETTGLA+P P+ T D +
Sbjct: 147 NNGCVCCTVRGDLIRVVEGLMR----RPGRFDAIVVETTGLADPVPVAQTFFMDDDVRSK 202
Query: 123 FEIQSVVACVDALNAREHLTNN-EAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALN 181
++ +VVA VDA + L ++ EA++QI FAD V+L KTDL L K++ I+A+N
Sbjct: 203 TKLDAVVALVDAKHLPLRLKDSKEAEDQIAFADVVVLNKTDLVTPE-ELAKVEATIRAIN 261
Query: 182 PSAEI------------------FD-KRAIDYESLFSRKNRARNFMPR------------ 210
P+A+I FD RA++ + F + +
Sbjct: 262 PAAKIHRTTRAGVALSEVLDRGAFDLSRALENDPHFLEGHDDHDHHDHDHHDHDGHHHHD 321
Query: 211 ----------MPKDSHSQGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRIKGIIDI 260
P D H +++S+ G M+ F W+ + G ILR+KGII +
Sbjct: 322 HDGHDHHHHDHPSDIHDVTVQSVSLR-GGEMDPKKFFPWIEKITQMEGPNILRLKGIIAL 380
Query: 261 -GSGFLVSINGVMHVIYPPKHILKDQNG----SNLVFIMRHLEREKILNS 305
G I GV H+I H ++G S LVFI R L+ E++ S
Sbjct: 381 KGDDERYVIQGV-HMIIEGDHQRAWKDGEKHESRLVFIGRELDAERLKKS 429
>ref|NP_436673.1| (NC_003078) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC48533.1| (AL603642) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 349
Score = 124 bits (312), Expect = 1e-27
Identities = 96/336 (28%), Positives = 160/336 (47%), Gaps = 38/336 (11%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYL 62
KIP+T++TGFLG+GKT+ L+ L + +A+I NE G+ +D + V E++ +
Sbjct: 10 KIPVTILTGFLGAGKTTLLNHILTERHGHRIAVIENEFGEVDVDSDL--VLASEEEIYQM 67
Query: 63 NAGCVCC--NKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLG 120
GC+CC + R DL+E L+ L + IL +ET+GLA+P P+ D +G
Sbjct: 68 KNGCICCFVDVRNDLIEVLQKLLARKDKFDHIL----VETSGLADPTPVATAFFIDDEIG 123
Query: 121 VHFEIQSVVACVDALNAREHL-------TNNEAKEQIVFADSVLLTKTDLQNDSAALTKL 173
H + +V VDA + +H+ +N+A +QIV AD +++ K DL ++ + L
Sbjct: 124 KHVTLDGIVTLVDAKHIGQHIDDPVLDGRDNQAVDQIVAADRIIINKIDLVSE-GEIAPL 182
Query: 174 KERIQALNPSAEIFDKR--AIDYESLFSRKNRARNFMPRMPK-----------------D 214
+ ++ LN +AEI +D S+ A +++ K
Sbjct: 183 ERGMRKLNQTAEIVRSSYGRVDLSSILGISGFAPSYVAERAKLLDLDHHHHHDHHHHHHH 242
Query: 215 SHSQGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRIKGIIDIGSGFLVSINGVMHV 274
H + S F+ + +L+ LL + G I R KGII I + +H
Sbjct: 243 LHDATVSSESFVFDRPFDQGRLTDYLAGLLREEGDDIFRTKGIIAIAGDPRFFVLQAVHK 302
Query: 275 I--YPPKHIL-KDQNGSNLVFIMRHLEREKILNSLK 307
+ + P H+ KD + LVFI R+L+R + L+
Sbjct: 303 LMDFRPDHVWGKDMPYTKLVFIGRNLDRAALERGLE 338
>ref|NP_518168.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD13575.1| (AL646057) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 362
Score = 124 bits (310), Expect = 2e-27
Identities = 71/185 (38%), Positives = 110/185 (59%), Gaps = 5/185 (2%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLN 63
IP+T++TGFLGSGKT+ L L + +A+I NE G+ +D IL VQ E+++ ++
Sbjct: 5 IPVTILTGFLGSGKTTLLKRILTEQHGMKIAVIENEFGEENIDNDIL-VQDGNEQIVQMS 63
Query: 64 AGCVCCNKRLDLVESLKATLNNYEWHGEI-LRRIIIETTGLANPAPILWTILSDTFLGVH 122
GC+CC R DLV +L L + GE+ R++IETTG+ANP P+ T D +
Sbjct: 64 NGCICCTIRGDLVAALSDLLTRRD-KGELQFDRVVIETTGVANPGPVAQTFFMDDEIAAR 122
Query: 123 FEIQSVVACVDALNAREHL-TNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALN 181
+ + +V+ VDA + + L EA+ Q+ FAD++ +TK DL +D + L+ R+ +N
Sbjct: 123 YLLDAVITLVDAKHGNQQLDRQEEAQRQVGFADAIFITKGDLVSDD-DVEALRHRLLHMN 181
Query: 182 PSAEI 186
P A I
Sbjct: 182 PRAPI 186
>ref|NP_463389.1| (NC_003197) putative cobalamin synthesis protein [Salmonella
typhimurium LT2]
gb|AAL23348.1| (AE008913) putative cobalamin synthesis protein [Salmonella
typhimurium LT2]
Length = 318
Score = 120 bits (302), Expect = 2e-26
Identities = 80/267 (29%), Positives = 139/267 (51%), Gaps = 14/267 (5%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKML 60
M I +TL+TGFLG+GKT+ L LN+ +A+I NE G+ ++D +++ + ++
Sbjct: 1 MTPIAVTLLTGFLGAGKTTLLRHILNEQHGFKIAVIENEFGEVSVDDQLIGDR--ATQIK 58
Query: 61 YLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLG 120
L GC+CC + +L ++L L++ + R++IE TG+A+P PI+ T S L
Sbjct: 59 TLTNGCICCTRSNELEDALLDLLDSRDRGDIAFDRLVIECTGMADPGPIIQTFFSHDVLC 118
Query: 121 VHFEIQSVVACVDALNAREHLTN-NEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQA 179
+ + V+A VDA++A E + A+ QI +AD +LLTKTD+ DS KL+ER+
Sbjct: 119 ERYLLDGVIALVDAVHANEQMNQFTIAQSQIGYADRILLTKTDVAGDS---EKLRERLAR 175
Query: 180 LNPSAEIFD--KRAIDYESLFSRKN--RARNFMPRMPK----DSHSQGFETLSINFEGTM 231
+N A ++ ID LF+ N + P+ ++ + + +
Sbjct: 176 INARAPVYTVVHGDIDLSQLFNTSGFMLEENVLASQPRFHFIADKQNDVSSIVVELDYPV 235
Query: 232 EWSAFGIWLSLLLHQYGTQILRIKGII 258
+ S + LL + ++LR KG++
Sbjct: 236 DISEVSRVMENLLLESADKLLRYKGML 262
>ref|NP_386976.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC47449.1| (AL591792) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 368
Score = 118 bits (296), Expect = 8e-26
Identities = 69/185 (37%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLN 63
IP+T++TG+LGSGKT+ L+ L++ + A+I+NE G+ +D + + E++ +N
Sbjct: 10 IPVTVLTGYLGSGKTTLLNRILSENHGRKYAVIVNEFGEIGIDNDL--IVESDEEIYEMN 67
Query: 64 AGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHF 123
GCVCC R DL+ ++ + II+ETTGLA+P P+ T D +
Sbjct: 68 NGCVCCTVRGDLIRVVEGLMR----RPGRFDAIIVETTGLADPVPVAQTFFMDDDVRAKT 123
Query: 124 EIQSVVACVDALNAREHLTNN-EAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNP 182
E+ +VVA VDA + L ++ EA++QI FAD VLL KTDL L +++ ++ +NP
Sbjct: 124 ELDAVVALVDAKHLPLRLKDSREAEDQIAFADVVLLNKTDLVTPE-ELERVEATVRVINP 182
Query: 183 SAEIF 187
SA I+
Sbjct: 183 SARIY 187
>ref|NP_458953.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD03375.1| (AL627284) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 318
Score = 118 bits (296), Expect = 8e-26
Identities = 79/267 (29%), Positives = 138/267 (51%), Gaps = 14/267 (5%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKML 60
M I +TL+TGFLG+GKT+ L LN+ +A+I NE G+ ++D +++ + ++
Sbjct: 1 MTPIAVTLLTGFLGAGKTTLLRHILNEQHGFKIAVIENEFGEVSVDDQLIGDR--ATQIK 58
Query: 61 YLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLG 120
L GC+CC + +L ++L L++ + R++IE TG+A+P PI+ T L
Sbjct: 59 TLTNGCICCTRSNELEDALLDLLDSRDRGDIAFDRLVIECTGMADPGPIIQTFFYHDVLC 118
Query: 121 VHFEIQSVVACVDALNAREHLTN-NEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQA 179
+ + V+A VDA++A E + A+ QI +AD +LLTKTD+ DS KL+ER+
Sbjct: 119 ERYLLDGVIALVDAVHANEQMNQFTIAQSQIGYADRILLTKTDVAGDS---EKLRERLAR 175
Query: 180 LNPSAEIFD--KRAIDYESLFSRKN--RARNFMPRMPK----DSHSQGFETLSINFEGTM 231
+N A ++ ID LF+ N + P+ ++ + + +
Sbjct: 176 INARAPVYTVVHGDIDLSQLFNTSGFMLEENVLASQPRFHFIADKQNDVSSIVVELDYPV 235
Query: 232 EWSAFGIWLSLLLHQYGTQILRIKGII 258
+ S + LL + ++LR KG++
Sbjct: 236 DISEVSRVMENLLLESADKLLRYKGML 262
>sp|P24203|YJIA_ECOLI Hypothetical protein yjiA
Length = 318
Score = 117 bits (292), Expect = 2e-25
Identities = 65/188 (34%), Positives = 111/188 (58%), Gaps = 6/188 (3%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKML 60
M I +TL+TGFLG+GKT+ L LN+ +A+I NE G+ ++D +++ + ++
Sbjct: 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDR--ATQIK 58
Query: 61 YLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLG 120
L GC+CC++ +L ++L L+N + R++IE TG+A+P PI+ T S L
Sbjct: 59 TLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLC 118
Query: 121 VHFEIQSVVACVDALNAREHLTN-NEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQA 179
+ + V+A VDA++A E + A+ Q+ +AD +LLTKTD+ ++ KL ER+
Sbjct: 119 QRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEA---EKLHERLAR 175
Query: 180 LNPSAEIF 187
+N A ++
Sbjct: 176 INARAPVY 183
>ref|NP_356155.1| (NC_003063) AGR_L_732p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_534980.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK88940.1| (AE008236) AGR_L_732p [Agrobacterium tumefaciens str. C58 (Cereon)]
gb|AAL45296.1| (AE009379) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 375
Score = 116 bits (291), Expect = 3e-25
Identities = 67/186 (36%), Positives = 113/186 (60%), Gaps = 10/186 (5%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLN 63
IP+T++TG+LG+GKT+ L+ L++ + A+I+NE G+ +D ++ E++ +N
Sbjct: 10 IPVTVLTGYLGAGKTTLLNRILSENHGKKYAVIVNEFGEIGIDNDLIVES--DEEIYEMN 67
Query: 64 AGCVCCNKRLDLVESLKATLNNY-EWHGEILRRIIIETTGLANPAPILWTILSDTFLGVH 122
GCVCC R DL+ ++ + + G II+ETTGLA+P P+ T D +
Sbjct: 68 NGCVCCTVRGDLIRVVEGLMRRPGRFDG-----IIVETTGLADPVPVAQTFFMDDDVRAK 122
Query: 123 FEIQSVVACVDALNAREHLTNN-EAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALN 181
E+ +VVA VDA + L ++ EA++QI FAD V++ KTDL + ++++ ++A+N
Sbjct: 123 TELDAVVALVDAKHLPLRLKDSREAEDQIAFADVVVVNKTDLVTPE-EVARIEDIVRAIN 181
Query: 182 PSAEIF 187
PSA I+
Sbjct: 182 PSARIY 187
>emb|CAA86052.1| (Z37980) ORF14 [Escherichia coli]
Length = 261
Score = 114 bits (286), Expect = 1e-24
Identities = 63/188 (33%), Positives = 110/188 (58%), Gaps = 6/188 (3%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKML 60
M I +TL+TGFLG+GKT+ L LN+ +A+I NE G+ ++D +++ + ++
Sbjct: 29 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDR--ATQIK 86
Query: 61 YLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLG 120
L GC+CC++ +L ++L L+N + R++IE TG+A+P PI+ T S L
Sbjct: 87 TLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEILC 146
Query: 121 VHFEIQSVVACVDALNAREHLTN-NEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQA 179
+ + V+A VDA++A E + A+ Q+ D +LLTKTD+ ++ KL++R+
Sbjct: 147 QRYLLDGVIALVDAVHADEQMNRFTIAQSQVATPDRILLTKTDVAGEA---EKLRQRLAR 203
Query: 180 LNPSAEIF 187
+N A ++
Sbjct: 204 INARAPVY 211
>ref|XP_129218.1| (XM_129218) similar to dopamine responsive protein [Mus musculus]
gb|AAH18472.1|AAH18472 (BC018472) Unknown (protein for MGC:28027) [Mus musculus]
Length = 393
Score = 114 bits (286), Expect = 1e-24
Identities = 90/337 (26%), Positives = 163/337 (47%), Gaps = 50/337 (14%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCG---EKM 59
KIP+T++TG+LG+GKT+ L+ L + ++ +A+I+NE G+ + ++ L+V G E+
Sbjct: 39 KIPVTIVTGYLGAGKTTLLNYILTEQHNRKIAVILNEFGEGSAVEKSLAVSQGGELYEEW 98
Query: 60 LYLNAGCVCCNKR---LDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSD 116
L L GC+CC+ + L +E+L +++ I++ETTGLA+P + D
Sbjct: 99 LELRNGCLCCSVKDSGLRAIENLMQKKGKFDY-------ILLETTGLADPGAVASMFWVD 151
Query: 117 TFLGVHFEIQSVVACVDALNAREHLTN-------NEAKEQIVFADSVLLTKTDLQNDSAA 169
LG + ++ VD+ +HLT NEA Q+ AD +L+ KTDL ++
Sbjct: 152 AELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEATRQVALADMILINKTDLVSEE-E 210
Query: 170 LTKLKERIQALN-------------PSAEIFDKRAIDYESLFSRKNRARNFMPRMPKDSH 216
L L+ I+++N + I D A D S S + + ++ D
Sbjct: 211 LNNLRTTIRSINGLGKVLETQRSRVHLSNILDLHAYDILSGISLQKKLQHVSTAPHLD-- 268
Query: 217 SQGFETLSINFEGTMEWSAFGIWLSLLLHQ--------YGTQILRIKGIIDIGSGFLVSI 268
Q T++ G+ + +++ LL + + +++R+KG++ I I
Sbjct: 269 -QSIVTVTFEVPGSAKEECLNVFIQNLLWEKNVKNKDGHCMEVIRLKGLVSIKDKPQQMI 327
Query: 269 NGVMHVIYPPKHIL---KD--QNGSNLVFIMRHLERE 300
+H +Y + L KD + LVFI R+L+++
Sbjct: 328 VQGIHELYDLEESLVNWKDDAERACQLVFIGRNLDKD 364
>ref|NP_598219.1| (NM_133535) dopamine responsive protein [Rattus norvegicus]
gb|AAK31208.1|AF353305_1 (AF353305) dopamine responsive protein [Rattus norvegicus]
Length = 394
Score = 114 bits (285), Expect = 1e-24
Identities = 90/337 (26%), Positives = 163/337 (47%), Gaps = 50/337 (14%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCG---EKM 59
KIP+T++TG+LG+GKT+ L+ L + ++ +A+I+NE G+ ++ L+V G E+
Sbjct: 40 KIPVTIVTGYLGAGKTTLLNYILTEQHNRKIAVILNEFGEGNAVEKSLAVSQGGELYEER 99
Query: 60 LYLNAGCVCCNKR---LDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSD 116
L L GC+CC+ + L +E+L +++ I++ETTGLA+P + D
Sbjct: 100 LELRNGCLCCSVKDNGLKAIENLMQKKGKFDY-------ILLETTGLADPGAVASMFWVD 152
Query: 117 TFLGVHFEIQSVVACVDALNAREHLTN-------NEAKEQIVFADSVLLTKTDLQNDSAA 169
LG + ++ VD+ +HLT NEA Q+ AD +L+ KTDL ++
Sbjct: 153 AELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEATRQVALADMILINKTDLVSEE-E 211
Query: 170 LTKLKERIQALN-------------PSAEIFDKRAIDYESLFSRKNRARNFMPRMPKDSH 216
L KL+ I+++N + I D A D S S + + ++ D
Sbjct: 212 LNKLRTTIRSINGLGKVLETQRSRTHLSNILDLHAYDTLSGISLQKKLQHVSTAPHLD-- 269
Query: 217 SQGFETLSINFEGTMEWSAFGIWLSLLLHQYGT--------QILRIKGIIDIGSGFLVSI 268
Q T++ + G+ E + +++ LL + +++R+KG++ I I
Sbjct: 270 -QSIVTVTFDVPGSAEEESLNVFIQNLLWEKNVKNKDGRCMEVIRLKGLVSIKDKPQQMI 328
Query: 269 NGVMHVIYPPKHI---LKD--QNGSNLVFIMRHLERE 300
+H +Y + KD + LVFI ++L+++
Sbjct: 329 VQGIHELYELEESRVNWKDDAERACQLVFIGKNLDKD 365
>gb|AAK14935.1|AF212253_1 (AF212253) HCOBP [Homo sapiens]
Length = 376
Score = 113 bits (282), Expect = 3e-24
Identities = 88/324 (27%), Positives = 158/324 (48%), Gaps = 42/324 (12%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCG---EKM 59
KIP+T+ITG+LG+GKT+ L+ L + + VA+I+NE G+ + ++ L+V G E+
Sbjct: 41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEW 100
Query: 60 LYLNAGCVCCNKR---LDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSD 116
L L GC+CC+ + L +E+L +++ I++ETTGLA+P + D
Sbjct: 101 LELRNGCLCCSVKDSGLRAIENLMQKKGKFDY-------ILLETTGLADPGAVASMFWVD 153
Query: 117 TFLGVHFEIQSVVACVDALNAREHLTN-------NEAKEQIVFADSVLLTKTDLQNDSAA 169
LG + ++ VD+ +HLT NEA Q+ AD++L+ KTDL +
Sbjct: 154 AELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINKTDLVPEE-D 212
Query: 170 LTKLKERIQALNPSAEIFDKRAIDYESLFSRKNRARNFMPRMPKDSHSQGFETLSINFEG 229
+ KL+ I+++N +I + + I SL + P + Q T++ G
Sbjct: 213 VKKLRTTIRSINGLGQILETQRI---SLQKKLQHVPGTQPHL-----DQSIVTITFEVPG 264
Query: 230 TMEWSAFGIWLSLLLHQ--------YGTQILRIKGIIDIGSGFLVSINGVMHVIY----P 277
+ +++ LL + + +++R+KG++ I I +H +Y
Sbjct: 265 NAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEET 324
Query: 278 PKHILKDQNGSN-LVFIMRHLERE 300
P D +N LV + R+L+++
Sbjct: 325 PVSWKDDTERTNRLVLLGRNLDKD 348
>ref|NP_541286.1| (NC_003318) LOW AFFINITY ZINC TRANSPORT MEMBRANE PROTEIN [Brucella
melitensis]
gb|AAL53550.1| (AE009669) LOW AFFINITY ZINC TRANSPORT MEMBRANE PROTEIN [Brucella
melitensis]
Length = 372
Score = 111 bits (278), Expect = 1e-23
Identities = 98/357 (27%), Positives = 160/357 (44%), Gaps = 72/357 (20%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYL 62
+IP+T++TG+LGSGKT+ L+ L + + A+I+NE G+ +D + + E++ +
Sbjct: 14 RIPVTVLTGYLGSGKTTLLNRILTENHGKRYAVIVNEFGEIGIDNDL--IVESDEEIYEM 71
Query: 63 NAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVH 122
N GC+CC R DL+ ++ + I++ETTGLA+P P+ T D +
Sbjct: 72 NNGCICCTVRGDLIRVVEGLMR----RPGRFDAIVVETTGLADPVPVAQTFFMDDDVRAK 127
Query: 123 FEIQSVVACVDALNAREHLTNN-EAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALN 181
+ +VVA VDA + L ++ EA++QI FAD VL+ KTDL L ++ ++A+N
Sbjct: 128 TGLDAVVALVDAKHLPLRLKDSREAEDQIAFADVVLINKTDLVTPE-ELAAVEATVRAIN 186
Query: 182 PSAEI------------------FD-KRAIDYESLFSRKNRARNFM-PRMPKDSHSQGFE 221
P A I FD KR +D + F + + P D H G +
Sbjct: 187 PHAIIHRTERASIPLDRVLDRGAFDLKRVLDNDPHFLDHDDPDHVCGPDCDHDHHHHGHD 246
Query: 222 -------------------------------TLSINFE-GTMEWSAFGIWLSLLLHQYGT 249
S++ G ++ + F W+ + G
Sbjct: 247 HHHHDHHDHDHVCGPDCDHDHDHASPIHDVTVKSVSLRTGEIDPAKFFPWIQNITQTQGP 306
Query: 250 QILRIKGIID--------IGSGFLVSINGVMHVIYPPKHILKDQNGSNLVFIMRHLE 298
ILR+KGII + G + I G + P ++++ S LVFI R L+
Sbjct: 307 NILRLKGIIAFKDDPDRYVVQGVHMIIEGDHQRAWKP----EEKHESRLVFIGRELD 359
>ref|NP_296129.1| (NC_001263) cobW protein, putative [Deinococcus radiodurans]
pir||A75278 probable cobW protein - Deinococcus radiodurans (strain R1)
gb|AAF11951.1|AE002071_5 (AE002071) cobW protein, putative [Deinococcus radiodurans]
Length = 320
Score = 111 bits (277), Expect = 1e-23
Identities = 81/300 (27%), Positives = 159/300 (53%), Gaps = 12/300 (4%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYL 62
+IP+ ++ GFLG+GKT+ ++ + + + +I+NE GQ +D + ++ + + L
Sbjct: 15 QIPVIVVGGFLGAGKTTLVNHLIRSLPRR-LGIIVNEFGQTGVDGSL--IERLDDDVTEL 71
Query: 63 NAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVH 122
AGC+CC R DL+ +L ++ E + L I+E +G+A+P P+L T+L + +
Sbjct: 72 AAGCLCCTGRDDLLRAL-MEISMREHKPDAL---IVELSGVADPTPVLTTLL-ERSVRAA 126
Query: 123 FEIQSVVACVDALNAREHLTNN-EAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALN 181
F + ++VA VDA + + L ++ EA Q+ +A+ V++ KTD D A L + ++ LN
Sbjct: 127 FRLTTLVAVVDARHVMQTLQDHPEAARQLAYANLVVINKTDAA-DPARLDHAEGVLRGLN 185
Query: 182 PSAEI--FDKRAIDYESLFSRKNRARNFMPRMPKDSHSQGFETLSINFEGTMEWSAFGIW 239
P AE+ ++ ID E L +R++ + + H+ G + ++ + ++ A+ +
Sbjct: 186 PLAEVVRVEQGQIDAEKLLARRDFDPSVLTGAGAVEHTPGLSSFTLRTDRPLDPYAWQRF 245
Query: 240 LSLLLHQYGTQILRIKGIIDIGSGFLVSINGVMHVIYPPKHILKDQNGSNLVFIMRHLER 299
++ + ++LR+KG + + + + ++ D GS LVFI R L+R
Sbjct: 246 MTSFILARPAEVLRVKGFLTLHGYPQRVLFQAVRDLFTADAWDDDLGGSELVFIGRGLDR 305
>gb|EAA03490.1| (AAAB01008717) agCP10329 [Anopheles gambiae str. PEST]
Length = 740
Score = 110 bits (276), Expect = 2e-23
Identities = 85/306 (27%), Positives = 146/306 (46%), Gaps = 43/306 (14%)
Query: 12 FLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGCVCCNK 71
F GKT+ L+ ++ Q + A++INE G LD + VQ E+++ L++GC+CC+
Sbjct: 435 FANRGKTTLLNHWVKQPELGECAVLINEFGSVGLDHHL--VQQVDEQVVLLDSGCICCSV 492
Query: 72 RLDLVESLKAT-LNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHFEIQSVVA 130
+ LVE+L+ + + + +R+IIETTGLA+PAP+L+T+ + F+ + V
Sbjct: 493 QGSLVEALQGLFMKAIQRKIKPFKRLIIETTGLADPAPVLFTLREEGFIAQRYRFDGTVT 552
Query: 131 CVDALNAREHL-TNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNPSAEI--- 186
VDA + + L EA +Q+ AD ++++K DL D L +++ ++ ALNP+A I
Sbjct: 553 VVDAGHIEQQLAAQYEAVKQVALADLLVVSKGDLV-DEETLARVEAQLAALNPAAPIERV 611
Query: 187 ----------------FDKRAIDYESLFS-------RKNRARNFMPRM-----------P 212
+ D L + ++ A P+M P
Sbjct: 612 SNGVLSPAVLEKLGAYNEAAGRDVRQLLAWLRTESPKQGLASPMQPKMKPFAAKVGTAAP 671
Query: 213 KDSHSQGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRIKGIIDI-GSGFLVSINGV 271
E+ S+ ++ S + + QYG +LR+KGI+ + G V I+GV
Sbjct: 672 THFEHGNIESFSLRIGEPLKPSRLLAAIDAVQAQYGDALLRLKGILQLEGESQPVVIHGV 731
Query: 272 MHVIYP 277
+YP
Sbjct: 732 HGQLYP 737
>ref|NP_485136.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB73050.1| (AP003584) ORF_ID:alr1093~hypothetical protein [Nostoc sp. PCC
7120]
Length = 374
Score = 110 bits (274), Expect = 3e-23
Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLN 63
+P+T+ITGFLGSGKT+ L+ L+ A+++NE G+ +D + + E M+ L+
Sbjct: 19 MPVTIITGFLGSGKTTLLNHILSNQQGLKTAVLVNEFGEIGIDNEL--IVSTDENMVELS 76
Query: 64 AGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHF 123
GC+CC DLV+++ L E L +++ETTGLA+P P+ T L T L
Sbjct: 77 NGCICCTINNDLVDAVYKVLE----REEKLDYLVVETTGLADPLPVALTFLG-TELRDLT 131
Query: 124 EIQSVVACVDALNAREHLTNNEAK-EQIVFADSVLLTKTDLQNDSAALTKLKERIQALNP 182
+ S++ VDA N L N++A QI + D +LL KTDL D A+L L+ +I +
Sbjct: 132 RLDSIITVVDAANYSLDLFNSQAAYSQIAYGDVILLNKTDLV-DEASLNDLERKINEVKE 190
Query: 183 SAEI 186
A I
Sbjct: 191 GARI 194
>gb|AAH05996.1|AAH05996 (BC005996) COBW-like protein [Homo sapiens]
gb|AAH13432.1|AAH13432 (BC013432) COBW-like protein [Homo sapiens]
Length = 395
Score = 109 bits (272), Expect = 5e-23
Identities = 90/337 (26%), Positives = 160/337 (46%), Gaps = 49/337 (14%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCG---EKM 59
KIP+T+ITG+LG+GKT+ L+ L + + VA+I+NE G+ + ++ L+V G E+
Sbjct: 41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEW 100
Query: 60 LYLNAGCVCCNKR---LDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSD 116
L L GC+CC+ + L +E+L +++ I++ETTGLA+P + D
Sbjct: 101 LELRNGCLCCSVKDSGLRAIENLMQKKGKFDY-------ILLETTGLADPGAVASMFWVD 153
Query: 117 TFLGVHFEIQSVVACVDALNAREHLTN-------NEAKEQIVFADSVLLTKTDLQNDSAA 169
LG + ++ VD+ +HLT NEA Q+ AD++L+ KTDL +
Sbjct: 154 AELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINKTDLVPEE-D 212
Query: 170 LTKLKERIQALNPSAEI-------------FDKRAIDYESLFSRKNRARNFMPRMPKDSH 216
+ KL+ I+++N +I D A D S S + + ++ P
Sbjct: 213 VKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP--HL 270
Query: 217 SQGFETLSINFEGTMEWSAFGIWLSLLLHQ--------YGTQILRIKGIIDIGSGFLVSI 268
Q T++ G + +++ LL + + +++R+KG++ I I
Sbjct: 271 DQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVI 330
Query: 269 NGVMHVIY----PPKHILKDQNGSN-LVFIMRHLERE 300
+H +Y P D +N LV + R+L+++
Sbjct: 331 VQGVHELYDLEETPVSWKDDTERTNRLVLLGRNLDKD 367
>ref|NP_060961.2| (NM_018491) COBW-like protein [Homo sapiens]
gb|AAF68990.2| (AF257330) dopamine-responsive protein [Homo sapiens]
Length = 395
Score = 109 bits (272), Expect = 5e-23
Identities = 90/337 (26%), Positives = 160/337 (46%), Gaps = 49/337 (14%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCG---EKM 59
KIP+T+ITG+LG+GKT+ L+ L + + VA+I+NE G+ + ++ L+V G E+
Sbjct: 41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEW 100
Query: 60 LYLNAGCVCCNKR---LDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSD 116
L L GC+CC+ + L +E+L +++ I++ETTGLA+P + D
Sbjct: 101 LELRNGCLCCSVKDNGLRAIENLMQKKGKFDY-------ILLETTGLADPGAVASMFWVD 153
Query: 117 TFLGVHFEIQSVVACVDALNAREHLTN-------NEAKEQIVFADSVLLTKTDLQNDSAA 169
LG + ++ VD+ +HLT NEA Q+ AD++L+ KTDL +
Sbjct: 154 AELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINKTDLVPEE-D 212
Query: 170 LTKLKERIQALNPSAEI-------------FDKRAIDYESLFSRKNRARNFMPRMPKDSH 216
+ KL+ I+++N +I D A D S S + + ++ P
Sbjct: 213 VKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP--HL 270
Query: 217 SQGFETLSINFEGTMEWSAFGIWLSLLLHQ--------YGTQILRIKGIIDIGSGFLVSI 268
Q T++ G + +++ LL + + +++R+KG++ I I
Sbjct: 271 DQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVI 330
Query: 269 NGVMHVIY----PPKHILKDQNGSN-LVFIMRHLERE 300
+H +Y P D +N LV + R+L+++
Sbjct: 331 VQGVHELYDLEETPVSWKDDTERTNRLVLLGRNLDKD 367
>ref|XP_031187.2| (XM_031187) similar to COBW-like protein [Homo sapiens]
Length = 395
Score = 107 bits (267), Expect = 2e-22
Identities = 89/337 (26%), Positives = 159/337 (46%), Gaps = 49/337 (14%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCG---EKM 59
KIP+T+ITG+LG+GKT+ L+ L + + VA+I+NE G+ + ++ L+V G E+
Sbjct: 41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEW 100
Query: 60 LYLNAGCVCCNKR---LDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSD 116
L L GC+CC+ + L +E+L +++ I++ETTGLA+P + D
Sbjct: 101 LELRNGCLCCSVKDNGLRAIENLMQKKGKFDY-------ILLETTGLADPGAVASMFWVD 153
Query: 117 TFLGVHFEIQSVVACVDALNAREHLTN-------NEAKEQIVFADSVLLTKTDLQNDSAA 169
LG + ++ VD+ +HL NEA Q+ AD++L+ KTDL +
Sbjct: 154 AELGSDIYLDGIITIVDSKYGLKHLAEEKPDGLINEATRQVALADAILINKTDLVPEE-D 212
Query: 170 LTKLKERIQALNPSAEI-------------FDKRAIDYESLFSRKNRARNFMPRMPKDSH 216
+ KL+ I+++N +I D A D S S + + ++ P
Sbjct: 213 VKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP--HL 270
Query: 217 SQGFETLSINFEGTMEWSAFGIWLSLLLHQ--------YGTQILRIKGIIDIGSGFLVSI 268
Q T++ G + +++ LL + + +++R+KG++ I I
Sbjct: 271 DQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVI 330
Query: 269 NGVMHVIY----PPKHILKDQNGSN-LVFIMRHLERE 300
+H +Y P D +N LV + R+L+++
Sbjct: 331 VQGVHELYDLEETPVSWKDDTERTNRLVLLGRNLDKD 367
>ref|XP_165519.1| (XM_165519) hypothetical protein XP_165519 [Homo sapiens]
Length = 395
Score = 106 bits (265), Expect = 3e-22
Identities = 92/334 (27%), Positives = 158/334 (46%), Gaps = 43/334 (12%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCG---EKM 59
KIP+T+ITG+LG+GKT+ L+ L + + VA+I+NE G+ + ++ L+V G E+
Sbjct: 41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGELYEEW 100
Query: 60 LYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFL 119
L L GC+CC+ + L+A N + G+ I++ETTGLA+P + D L
Sbjct: 101 LELRNGCLCCSVK---DNGLRAIENLMQKKGK-FDDILLETTGLADPGAVASMFWVDAEL 156
Query: 120 GVHFEIQSVVACVDALNAREHLTN-------NEAKEQIVFADSVLLTKTDLQNDSAALTK 172
G + ++ VD+ +HLT NEA Q+ AD +L+ KTDL + + K
Sbjct: 157 GSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLVPEE-DVKK 215
Query: 173 LKERIQALNPSAEI-------------FDKRAIDYESLFSRKNRARNFMPRMPKDSHSQG 219
L+ I+++N +I D A D S S + + ++ P Q
Sbjct: 216 LRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP--HLDQS 273
Query: 220 FETLSINFEGTMEWSAFGIWLSLLLHQ--------YGTQILRIKGIIDIGSGFLVSINGV 271
T++ G + +++ LL + + +++R+KG++ I I
Sbjct: 274 IVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQG 333
Query: 272 MHVIY----PPKHILKDQNGSN-LVFIMRHLERE 300
+H +Y P D +N LV I R+L+++
Sbjct: 334 VHELYDLEETPVSWKDDTERTNRLVLIGRNLDKD 367
>ref|NP_488762.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB76421.1| (AP003597) ORF_ID:all4722~hypothetical protein [Nostoc sp. PCC
7120]
Length = 353
Score = 103 bits (257), Expect = 3e-21
Identities = 69/185 (37%), Positives = 105/185 (56%), Gaps = 11/185 (5%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL-SVQYCGEKMLYL 62
+P+T+ITGFLGSGKT+ L++ L VA+++NE G +D ++L SV + ML L
Sbjct: 20 MPVTIITGFLGSGKTTLLNQILKNKHDLKVAVLVNEFGDINIDSQLLVSVD---QDMLEL 76
Query: 63 NAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVH 122
+ GC+CC LV+++ L E + ++IETTG+A+P PI+ T L T L
Sbjct: 77 SNGCICCTINDGLVDAVYRVLE----REERIDYLVIETTGVADPLPIILTFLG-TELRDL 131
Query: 123 FEIQSVVACVDA-LNAREHLTNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALN 181
+ S++ VDA H + A +Q+ +AD +LL KTDL S + L++ IQ +
Sbjct: 132 TNLDSILTVVDAEAFEPNHFESEAALKQLTYADIILLNKTDLAT-SEKIQALEDYIQTVK 190
Query: 182 PSAEI 186
SA I
Sbjct: 191 DSARI 195
>ref|NP_443064.1| (NC_000911) 47 kD protein [Synechocystis sp. PCC 6803]
pir||S76964 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA18876.1| (D90917) 47 kD protein [Synechocystis sp. PCC 6803]
Length = 383
Score = 102 bits (255), Expect = 4e-21
Identities = 64/184 (34%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLN 63
+P+T+ITGFLGSGKT+ L+ L+ A+++NE G+ +D ++ + M+ L+
Sbjct: 21 LPVTIITGFLGSGKTTLLNYILSNQQGLKTAVLVNEFGEIGIDNELVIAS--DKNMVELS 78
Query: 64 AGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHF 123
GCVCC DLVE++ L + + +++ETTGLA+P P+ T L T L
Sbjct: 79 NGCVCCTINEDLVEAVYKVLE----REQKIDYLVVETTGLADPLPVALTFLG-TELRDMT 133
Query: 124 EIQSVVACVDALNAREHLTNNE-AKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNP 182
+ S++ VD N L N++ A+ QI + D ++L KTDL + A + L+ R++ L
Sbjct: 134 RLDSIITMVDCENFSLDLFNSQAAQSQITYGDIIVLNKTDLV-EEADVDSLEVRLRDLKT 192
Query: 183 SAEI 186
A I
Sbjct: 193 GARI 196
>gb|AAF98566.1|AC013427_9 (AC013427) Contains similarity to cobW protein from Rhodobacter
capsulatus gi|7448322. [Arabidopsis thaliana]
Length = 354
Score = 97.1 bits (240), Expect = 2e-19
Identities = 80/308 (25%), Positives = 148/308 (47%), Gaps = 27/308 (8%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIG-QAALDQRILSVQYCG---EKM 59
+ +++ITG+LG+GK++ ++ LN + +A+I+NE G + +++ +++ G E+
Sbjct: 42 VGVSVITGYLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEEGAIVEEW 101
Query: 60 LYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFL 119
+ L GCVCC + LV++L+ + + L I++ETTGLANPAP+ + D L
Sbjct: 102 VELANGCVCCTVKHSLVQALEQLVQ----RKDRLDHILLETTGLANPAPLASILWLDDQL 157
Query: 120 GVHFEIQSVVA----CVDALNAREHLTNN-------EAKEQIVFADSVLLTKTDLQNDSA 168
++ +V VDA N R L EA QI FAD++++ K DL +
Sbjct: 158 ESEVKLDCIVTLLEQVVDAKNLRFQLNERRDSSSFPEAFNQIAFADTIIMNKVDLISQEE 217
Query: 169 ALTKLKERIQALNPSAEIFDKRAIDYESLFSRKNRARNFMPRMPKDSHSQGFETLSINFE 228
+ +L++ I ++N A + + S A + D H G TL I+
Sbjct: 218 S-DELEKEIHSINSLANVIRSVRCQHVSRLESLLEANKSL--TTTDLHDSGVRTLCISEP 274
Query: 229 GTMEWSAFGIWLSLLLHQYGTQ--ILRIKGIIDIGSGFLVSINGVMHVIY---PPKHILK 283
+ +WL +L ++ + R K ++ I + + I + IY P + +
Sbjct: 275 QPINLDKVRLWLEEILWDKKSEMDVYRCKAVLSIQNSDQMHILQAVRDIYEIVPARKWSE 334
Query: 284 DQNGSNLV 291
++N +N +
Sbjct: 335 EENRTNKI 342
>ref|NP_596245.1| (NC_003423) hypothetical protein [Schizosaccharomyces pombe]
pir||T39481 hypothetical protein SPBC15D4.05 - fission yeast
(Schizosaccharomyces pombe)
emb|CAA20480.1| (AL031349) hypothetical protein [Schizosaccharomyces pombe]
Length = 411
Score = 94.4 bits (233), Expect = 2e-18
Identities = 62/192 (32%), Positives = 109/192 (56%), Gaps = 13/192 (6%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKM---- 59
+P+T++TGFLG+GKTS L L + + VA+++NE+G + +R L GE++
Sbjct: 61 VPVTILTGFLGAGKTSLLRSILENRNGKRVAVLMNEVGDSGDLERSLMEDVGGEELYEEW 120
Query: 60 LYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFL 119
+ L+ GC+CC + + +++L+ + G I+IETTG+ANP P+ T D L
Sbjct: 121 VALSNGCMCCTVKDNGIKALEKIMRQ---KGR-FDNIVIETTGIANPGPLAQTFWLDDAL 176
Query: 120 GVHFEIQSVVACVDALNAREHLTNNEAK---EQIVFADSVLLTKTDLQNDSAALTKLKER 176
++ +V +D N +++ +E+ QI AD ++L KTDL + S AL+ +++
Sbjct: 177 KSDVKLDGIVTVIDCKNI-DNILKDESDIGFIQISHADCLILNKTDLIS-SEALSVVRQT 234
Query: 177 IQALNPSAEIFD 188
I +N A+I +
Sbjct: 235 ILKINCLAKIIE 246
>ref|NP_655632.1| (NC_003995) cobW, Cobalamin synthesis protein/P47K [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 395
Score = 92.8 bits (229), Expect = 5e-18
Identities = 62/216 (28%), Positives = 113/216 (51%), Gaps = 34/216 (15%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL---SVQYCGE 57
M KIPIT+++GFLGSGKT+ L L ++ VA+I+N++ + D ++ E
Sbjct: 1 MKKIPITVLSGFLGSGKTTLLHHILTNKNNLKVAVIVNDMSEVNFDASLIKKGGFSRTEE 60
Query: 58 KMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTI-LSD 116
K++ + GC+CC R DL+ + + N + + I+IE++G++ P P+ T +D
Sbjct: 61 KLVEIQNGCICCTLREDLIIEVNRLVENGD-----IDYIVIESSGISEPIPVAQTFTYTD 115
Query: 117 TFLGV----HFEIQSVVACVDA-------------LNAREHLTNNEAKE-------QIVF 152
L + + + ++V VDA L+ ++ + N+ +E QI F
Sbjct: 116 DVLNIDLTKNCRLDTMVTVVDANRFWDDFADGESLLDRKQAINENDTREVIDLLIDQIEF 175
Query: 153 ADSVLLTKTDLQNDSAALTKLKERIQALNPSAEIFD 188
A+ ++L K DL + + +L + +Q LNP+A+I +
Sbjct: 176 ANVIILNKIDLL-EKEDVIELHQLLQKLNPNAKIIE 210
>ref|NP_173974.1| (NM_102414) hypothetical protein [Arabidopsis thaliana]
Length = 301
Score = 92.8 bits (229), Expect = 5e-18
Identities = 60/194 (30%), Positives = 108/194 (54%), Gaps = 16/194 (8%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQA-ALDQRILSVQYCG---EKM 59
+ +++ITG+LG+GK++ ++ LN + +A+I+NE G+ +++ +++ G E+
Sbjct: 42 VGVSVITGYLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEEGAIVEEW 101
Query: 60 LYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFL 119
+ L GCVCC + LV++L+ + + L I++ETTGLANPAP+ + D L
Sbjct: 102 VELANGCVCCTVKHSLVQALEQLVQRKDR----LDHILLETTGLANPAPLASILWLDDQL 157
Query: 120 GVHFEIQSVVACVDALNAREHLTNN-------EAKEQIVFADSVLLTKTDLQNDSAALTK 172
++ +V VDA N R L EA QI FAD++++ K DL + + +
Sbjct: 158 ESEVKLDCIVTVVDAKNLRFQLNERRDSSSFPEAFNQIAFADTIIMNKVDLISQEES-DE 216
Query: 173 LKERIQALNPSAEI 186
L++ I ++N A +
Sbjct: 217 LEKEIHSINSLANV 230
>ref|NP_645223.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB94271.1| (AP004823) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 400
Score = 91.7 bits (226), Expect = 1e-17
Identities = 59/215 (27%), Positives = 117/215 (53%), Gaps = 35/215 (16%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILS----VQYCG 56
M KIP+T+++G+LGSGKT+ L+ L + + +A+I+N++ + +D+ +++ +
Sbjct: 1 MAKIPVTVLSGYLGSGKTTLLNHILQNREGRRIAVIVNDMSEVNIDKDLVADGGGLSRTD 60
Query: 57 EKMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTI-LS 115
EK++ L+ GC+CC R DL++ ++ + + +I+IE+TG++ P P+ T
Sbjct: 61 EKLVELSNGCICCTLRDDLLKEVERLVKKGG-----IDQIVIESTGISEPVPVAQTFSYI 115
Query: 116 DTFLGVHF----EIQSVVACVDA------LNAREHLTNNEAK--------------EQIV 151
D LG+ + ++V VDA +N+ + L + + +Q+
Sbjct: 116 DDELGIDLTAICRLDTMVTVVDANRFVHDINSEDLLMDRDQSVDETDERSIADLLIDQVE 175
Query: 152 FADSVLLTKTDLQNDSAALTKLKERIQALNPSAEI 186
F D +++ K DL ++ L KL++ + AL P+A+I
Sbjct: 176 FCDVLIINKIDLISEE-ELAKLEKVLSALQPTAKI 209
>ref|NP_370974.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373661.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB41639.1| (AP003130) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB56612.1| (AP003359) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 400
Score = 90.5 bits (223), Expect = 2e-17
Identities = 59/215 (27%), Positives = 116/215 (53%), Gaps = 35/215 (16%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILS----VQYCG 56
M KIP+T+++G+LGSGKT+ L+ L + + +A+I+N++ + +D+ +++ +
Sbjct: 1 MAKIPVTVLSGYLGSGKTTLLNHILQNREGRRIAVIVNDMSEVNIDKDLVADGGGLSRTD 60
Query: 57 EKMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTI-LS 115
EK++ L+ GC+CC R DL++ ++ + + +I+IE+TG++ P P+ T
Sbjct: 61 EKLVELSNGCICCTLRDDLLKEVERLVKKGG-----IDQIVIESTGISEPVPVAQTFSYI 115
Query: 116 DTFLGVHF----EIQSVVACVDA------LNAREHLTNNEAK--------------EQIV 151
D LG+ + ++V VDA +N+ + L + + +Q+
Sbjct: 116 DDELGIDLTAICRLDTMVTVVDANRFVHDINSEDLLMDRDQSVDETDERSIADLLIDQVE 175
Query: 152 FADSVLLTKTDLQNDSAALTKLKERIQALNPSAEI 186
F D +++ K DL ++ L KL++ + AL P A+I
Sbjct: 176 FCDVLIINKIDLISEE-ELAKLEKVLSALQPIAKI 209
>ref|NP_213099.1| (NC_000918) cobalamin synthesis related protein CobW [Aquifex
aeolicus]
pir||H70313 cobalamin synthesis related protein CobW - Aquifex aeolicus
gb|AAC06494.1| (AE000675) cobalamin synthesis related protein CobW [Aquifex
aeolicus]
Length = 292
Score = 89.7 bits (221), Expect = 4e-17
Identities = 55/180 (30%), Positives = 106/180 (58%), Gaps = 14/180 (7%)
Query: 8 LITGFLGSGKTSFLSEYLNQ-TDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGC 66
++TGFLGSGKTS + + + + VA+++NE G+ +D +IL Y ++L L+ GC
Sbjct: 6 VVTGFLGSGKTSLIINSVKEHLKDKKVAIVVNEFGEVGVDGKILKNVY--SEVLELSEGC 63
Query: 67 VCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHFEIQ 126
+CC + S++ + +Y + E+L I+ET+G+A P PI++++ + LG+ +
Sbjct: 64 ICCKLSAEFESSVRRLIQDY--NPEVL---IVETSGVAEPFPIVFSLKT---LGLF--VD 113
Query: 127 SVVACVDALNAREHLTNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNPSAEI 186
V+ +D+ N ++ ++ AK Q+ ++ V+L KTDL + L K+KE ++ + ++
Sbjct: 114 GVICVIDSKNFPKYKEDDTAKYQLATSNVVVLNKTDLVS-KEELEKVKEEVKKIKEKYKV 172
>ref|NP_290967.1| (NC_002655) Z5951 gene product [Escherichia coli O157:H7 EDL933]
ref|NP_313338.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG59534.1|AE005666_6 (AE005666) Z5951 gene product [Escherichia coli O157:H7 EDL933]
dbj|BAB38734.1| (AP002569) hypothetical protein [Escherichia coli O157:H7]
Length = 284
Score = 89.0 bits (219), Expect = 7e-17
Identities = 49/154 (31%), Positives = 90/154 (57%), Gaps = 6/154 (3%)
Query: 35 LIINEIGQAALDQRILSVQYCGEKMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILR 94
+I NE G+ ++D +++ + ++ L GC+CC++ +L ++L L+N +
Sbjct: 1 MIENEFGEVSVDDQLIGDR--ATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFD 58
Query: 95 RIIIETTGLANPAPILWTILSDTFLGVHFEIQSVVACVDALNAREHLTN-NEAKEQIVFA 153
R++IE TG+A+P PI+ T S L + + V+A VDA++A E + A+ Q+ +A
Sbjct: 59 RLVIECTGMADPGPIIQTFFSHEILCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA 118
Query: 154 DSVLLTKTDLQNDSAALTKLKERIQALNPSAEIF 187
D +LLTKTD+ ++ KL+ER+ +N A ++
Sbjct: 119 DRILLTKTDVAGEA---EKLRERLARINARAPVY 149
>ref|NP_242656.1| (NC_002570) BH1790~unknown conserved protein [Bacillus halodurans]
dbj|BAB05509.1| (AP001513) BH1790~unknown conserved protein [Bacillus halodurans]
Length = 395
Score = 88.6 bits (218), Expect = 9e-17
Identities = 66/216 (30%), Positives = 109/216 (49%), Gaps = 42/216 (19%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL---SVQYCGEKM 59
KIP+T+++G+LG+GKT+ L+ L + VA+I+N++ + +D ++ EK+
Sbjct: 5 KIPVTVLSGYLGAGKTTVLNHVLANKEGMKVAVIVNDMSEVNIDATLVKQGGFTRTDEKL 64
Query: 60 LYLNAGCVCCNKRLDLVESLK--ATLNNYEWHGEILRRIIIETTGLANPAPILWTI-LSD 116
+ L GC+CC R DL+ ++ A L N ++ I+IE+TG++ P P+ T D
Sbjct: 65 VELQNGCICCTLREDLIIEVEKLARLGNIDY-------ILIESTGISEPIPVAQTFTYLD 117
Query: 117 TFLGVHF----EIQSVVACVDALNAREHLTNNEAK--------------------EQIVF 152
LG+H + ++V VDA E + E+ +QI F
Sbjct: 118 EELGIHLGDRCTLDTMVTVVDANRFWEDYESGESLLDRKQTDDEADTREVVDLLIDQIEF 177
Query: 153 ADSVLLTKTDL--QNDSAALTKLKERIQALNPSAEI 186
A+ +LL K DL ++D LT + + LNP AEI
Sbjct: 178 ANVILLNKVDLVEEDDVRELTAV---LHKLNPEAEI 210
>ref|NP_539611.1| (NC_003317) COBW PROTEIN [Brucella melitensis]
gb|AAL51875.1| (AE009511) COBW PROTEIN [Brucella melitensis]
Length = 349
Score = 87.8 bits (216), Expect = 1e-16
Identities = 83/298 (27%), Positives = 137/298 (45%), Gaps = 48/298 (16%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL---SVQYCGEK- 58
KIP T+ITGFLGSGKT+ + L + + +ALIINE G +D IL ++ C E+
Sbjct: 5 KIPATVITGFLGSGKTTMIRNLLENANGKRIALIINEFGDLGVDGGILKRCGIETCREED 64
Query: 59 MLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPIL----WTIL 114
++ LN GC+CC D + ++ L+ + I+IET+GLA P P++ W +
Sbjct: 65 VIELNNGCICCTVADDFIPTMTKLLDREDRPD----HIVIETSGLALPQPLVAAFNWPEI 120
Query: 115 SD--TFLGVHFEIQSVVAC----------VDALNAREHLTNNEA------KEQIVFADSV 156
T GV I + VDA A + ++E+ ++QI AD +
Sbjct: 121 KTQVTVDGVVTVIDAAAVAEGRFADDHDKVDAQRAADESLDHESPLEELFEDQIHAADLI 180
Query: 157 LLTKTDLQNDSAALTKLKERI-----QALNPSAEIFDKRAIDY---------ESLFSRKN 202
+L K DL D+A L +K + + +N F K D + + +R++
Sbjct: 181 VLNKADL-IDAAKLDSVKADVAERSSRRVNMVPASFGKLGADVLLGLGVGTEDDIVNRRS 239
Query: 203 RARNFMPRMPKDSHSQGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRIKGIIDI 260
+ H + FE+ + + AF L ++ ++ ILR+KG +D+
Sbjct: 240 HHEAHHGDGHEHDHDE-FESFVVEAGSVADPKAFAEKLKAVIAEH--DILRLKGFVDV 294
>ref|NP_418772.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
pir||S56578 yjiA protein - Escherichia coli
gb|AAA97249.1| (U14003) yjiA [Escherichia coli]
gb|AAC77308.1| (AE000506) orf, hypothetical protein [Escherichia coli K12]
Length = 284
Score = 87.4 bits (215), Expect = 2e-16
Identities = 49/154 (31%), Positives = 89/154 (56%), Gaps = 6/154 (3%)
Query: 35 LIINEIGQAALDQRILSVQYCGEKMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILR 94
+I NE G+ ++D +++ + ++ L GC+CC++ +L ++L L+N +
Sbjct: 1 MIENEFGEVSVDDQLIGDR--ATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFD 58
Query: 95 RIIIETTGLANPAPILWTILSDTFLGVHFEIQSVVACVDALNAREHLTN-NEAKEQIVFA 153
R++IE TG+A+P PI+ T S L + + V+A VDA++A E + A+ Q+ +A
Sbjct: 59 RLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA 118
Query: 154 DSVLLTKTDLQNDSAALTKLKERIQALNPSAEIF 187
D +LLTKTD+ ++ KL ER+ +N A ++
Sbjct: 119 DRILLTKTDVAGEA---EKLHERLARINARAPVY 149
>ref|NP_386064.1| (NC_003047) PROBABLE COBALAMINE BIOSYNTHESIS PROTEIN [Sinorhizobium
meliloti]
emb|CAC46537.1| (AL591789) PROBABLE COBALAMINE BIOSYNTHESIS PROTEIN [Sinorhizobium
meliloti]
Length = 354
Score = 84.7 bits (208), Expect = 1e-15
Identities = 64/201 (31%), Positives = 99/201 (48%), Gaps = 31/201 (15%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL---SVQYCGEK- 58
KIP T+ITGFLG+GKT+ + L D + +ALIINE G +D +L + C E+
Sbjct: 10 KIPATVITGFLGAGKTTMIRNLLQNADGKRIALIINEFGDLGVDGDVLKGCGAEACSEED 69
Query: 59 MLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPIL----WTIL 114
++ L GC+CC D + ++ L I+IET+GLA P P++ W +
Sbjct: 70 IIELTNGCICCTVADDFIPTMTKLLERENRPD----HIVIETSGLALPQPLVAAFNWPDI 125
Query: 115 SD--TFLGVHFEIQSVVAC----------VDALNAREHLTNNEA------KEQIVFADSV 156
T GV + S VDAL + ++E+ ++Q+ AD +
Sbjct: 126 RSEVTVDGVVTVVDSAAVAAGRFADDHDKVDALRVGDDNLDHESPLEELFEDQLTAADLI 185
Query: 157 LLTKTDLQNDSAALTKLKERI 177
+L KTDL D+A L ++E +
Sbjct: 186 VLNKTDL-IDAAGLKSVREEV 205
>ref|NP_355733.1| (NC_003062) AGR_C_5088p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_533470.1| (NC_003304) cobalamin synthesis related protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK88518.1| (AE008193) AGR_C_5088p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL43786.1| (AE009228) cobalamin synthesis related protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 345
Score = 84.3 bits (207), Expect = 2e-15
Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 41/215 (19%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL---SVQYCGE 57
+ ++P T++TGFLG+GKT+ L L + D + +A+I+NE G +D IL ++ C E
Sbjct: 5 LDRVPCTIVTGFLGAGKTTLLRGLLEKLDGKRLAIIVNEFGDIGIDGEILKGCGIESCPE 64
Query: 58 K-MLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPIL----WT 112
+ ++ L GC+CC D +++ L+ + I+IET+GLA P P++ W
Sbjct: 65 ENIVELANGCICCTVADDFQPAIEQILSRQ----PKVEHILIETSGLALPKPLVQAFQWP 120
Query: 113 ILSDTFLGVHFEIQSVVACVDALNARE------------HLTNNEA-----------KEQ 149
+ + +VVA VD E N+EA ++Q
Sbjct: 121 AIKS-----RVTVDAVVAVVDGAALAEGQVAHDMEALAAQRANDEALDHDDPVEEVFEDQ 175
Query: 150 IVFADSVLLTKTDLQNDSAALTKLKERIQALNPSA 184
+ AD ++LTK DL +D A L K K I P A
Sbjct: 176 VACADLIVLTKADLLDD-AGLEKAKAHILEHLPKA 209
>ref|NP_599924.1| (NC_003450) COG0523:Putative GTPases (G3E family) [Corynebacterium
glutamicum]
gb|AAM21498.1|AF434798_1 (AF434798) unknown [Corynebacterium glutamicum]
dbj|BAB98085.1| (AP005276) Putative GTPases (G3E family) [Corynebacterium
glutamicum ATCC 13032]
Length = 362
Score = 84.0 bits (206), Expect = 2e-15
Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 34/210 (16%)
Query: 5 PITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILS----VQYCGEKML 60
P+T+++GFLGSGKT+ L++ L+ + +A+I+N+ + +D +++ + ++ +
Sbjct: 6 PVTVLSGFLGSGKTTLLNQILHHRGSRKIAVIVNDFSEINIDAALIASEGHLTRGEDRFV 65
Query: 61 YLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPIL----WTILSD 116
L GC+CC R DLV+S+ ++ + I+IE+TG++ P P+ W
Sbjct: 66 ELTNGCICCTLREDLVDSVGELASS-----DRFDHIVIESTGISEPMPVAATFEWQWDDG 120
Query: 117 TFLGVHFEIQSVVACVDALNAREHLTNNEA--------------------KEQIVFADSV 156
T L I ++V VDA + + N + +QI FAD +
Sbjct: 121 TRLADKAPIDTMVTLVDATQFIDLIRKNTSLTEADMGATEDDERTIADLLTDQIEFADRI 180
Query: 157 LLTKTDLQNDSAALTKLKERIQALNPSAEI 186
+TK+DL D L + + I +++P A I
Sbjct: 181 YITKSDLV-DRTVLEQTRALIASMSPRARI 209
>pir||S18778 hypothetical protein (mrr 3' region) - Escherichia coli (fragment)
emb|CAA38118.1| (X54198) downstream ORF; unknown function [Escherichia coli]
Length = 280
Score = 84.0 bits (206), Expect = 2e-15
Identities = 47/150 (31%), Positives = 86/150 (57%), Gaps = 6/150 (4%)
Query: 39 EIGQAALDQRILSVQYCGEKMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIII 98
E G+ ++D +++ + ++ L GC+CC++ +L ++L L+N + R++I
Sbjct: 1 EFGEVSVDDQLIGDR--ATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVI 58
Query: 99 ETTGLANPAPILWTILSDTFLGVHFEIQSVVACVDALNAREHLTN-NEAKEQIVFADSVL 157
E TG+A+P PI+ T S L + + V+A VDA++A E + A+ Q+ +AD +L
Sbjct: 59 ECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL 118
Query: 158 LTKTDLQNDSAALTKLKERIQALNPSAEIF 187
LTKTD+ ++ KL ER+ +N A ++
Sbjct: 119 LTKTDVAGEA---EKLHERLARINARAPVY 145
>ref|NP_242385.1| (NC_002570) BH1519~unknown conserved protein [Bacillus halodurans]
dbj|BAB05238.1| (AP001512) BH1519~unknown conserved protein [Bacillus halodurans]
Length = 320
Score = 83.6 bits (205), Expect = 3e-15
Identities = 86/332 (25%), Positives = 148/332 (43%), Gaps = 48/332 (14%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGV--ALIINEIGQAALDQRILSVQYCGEKMLY 61
IP+ L +GFLGSGKT+ L LNQ G+ A+++NE G+ +++ + + E ++
Sbjct: 2 IPVYLFSGFLGSGKTTVLLNVLNQLKEDGLRPAIVLNEAGEMNVEKEL----FANETVVE 57
Query: 62 LNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGV 121
L GC+CC + DL L+ L + ++L +IE TG+ANP I+ +L+D
Sbjct: 58 LLNGCICCTIQDDLKAELQRFLTINDRSVDVL---LIEGTGIANPREII-EVLTDPPFIE 113
Query: 122 HFEIQSVVACVDA---LNAREHLTNNE-----AKEQIVFADSVLLTKTDLQNDSAALTKL 173
+QSV+ +DA L R ++++ KEQ+ + +LL K DL D L K+
Sbjct: 114 QLALQSVIGIIDASRYLEYRSLFSSSKEIRAVLKEQVAESTLLLLNKQDLV-DGRTLHKV 172
Query: 174 KERIQ--------------ALNPSAEIFDKR-AIDYESLFSRKNRARNFMPRMPKDSHSQ 218
+E+++ P+ E+ R +D + A + H
Sbjct: 173 EEKLKKDKKPGATILFCSYGKVPTEELLKPRIKVDTGKDHAYSGEASSHASH-SHHHHHH 231
Query: 219 GFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRIKGIIDIGSGFLVSINGVMHVIYPP 278
+ + ++ E + WL G Q++R KG + + L ++H Y
Sbjct: 232 DIQAIKLDLEQPVTEKELQRWLI----DQGDQLIRAKGYVRLQGNDL-----LVHFQYAS 282
Query: 279 KHI----LKDQNGSNLVFIMRHLEREKILNSL 306
K + K++ L+ I L RE + SL
Sbjct: 283 KQLSVRKSKEEVPPCLILIGVDLNRETLAKSL 314
>ref|NP_655789.1| (NC_003995) cobW, Cobalamin synthesis protein/P47K [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 307
Score = 83.2 bits (204), Expect = 4e-15
Identities = 78/269 (28%), Positives = 137/269 (49%), Gaps = 28/269 (10%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYL--NQTDHQGVALIINEIGQAALDQRILSVQYCGEK 58
M K+ I ++ GFLGSGK++ L L + ++ VA+++NEIG+ ++D I+ + +
Sbjct: 1 MNKVEIHILGGFLGSGKSTLLQNLLLAEKKKNRKVAVLMNEIGEYSVDTDIIGKENVLRE 60
Query: 59 MLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTF 118
+L GC+CC L E L+ L++ + E I IETTG+A+P +L +S
Sbjct: 61 LL---KGCICCT----LKEELEIQLHSL-YQQERPDVIYIETTGVAHPIEVLDACVS-PI 111
Query: 119 LGVHFEIQSVVACVDALN--AREHLTNNEAK---EQIVFADSVLLTKTDLQNDSAALTKL 173
L E++S+V +DA+ R L+ N + EQ+ F +L+ K+DL + A K+
Sbjct: 112 LAPFLEVKSIVVVLDAVRWLNRSVLSANVQQLLHEQLKFGSHILINKSDLLIE-ADKNKV 170
Query: 174 KERIQALNPSAEIFDKR--AIDYESLFSRK--NRARNFMPRMPKDSHSQGFETLSINFEG 229
E ++A+N A++F+ + I E + + N + + + H Q T++ F
Sbjct: 171 IEEVKAINNHAKLFETKYCNISLEDIEEAEFTNDTEHETLHVKQHLHIQ---TMTYQFTK 227
Query: 230 TMEWSAFGIWLSLLLHQYGTQILRIKGII 258
+++ WLS L I R+KG +
Sbjct: 228 SIDQDKLYEWLSNL----PDSIYRVKGFV 252
>ref|NP_442507.1| (NC_000911) CobW protein [Synechocystis sp. PCC 6803]
pir||S76633 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA10577.1| (D64004) CobW protein [Synechocystis sp. PCC 6803]
Length = 352
Score = 82.8 bits (203), Expect = 5e-15
Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 40/202 (19%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL-SVQYCGE-- 57
M KIP+T++TGFLGSGKT+ + L + +A+++NE G+ +D IL S C E
Sbjct: 1 MHKIPVTVVTGFLGSGKTTLVRNLLQNNQGRRIAVLVNEFGEVGIDGDILRSCGVCDEDG 60
Query: 58 -----------KMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANP 106
K++ L GC+CC + + + +++A L E + I++ET+GLA P
Sbjct: 61 NQIFPASNEAPKIVELANGCLCCTVQEEFLPTMQALLE----RREEIDCIVVETSGLALP 116
Query: 107 APIL----WTIL--SDTFLGVHFEIQ-------SVVACVDALNAR-------EHLTNNEA 146
P++ W + T GV + ++V ++AL A+ +H T E
Sbjct: 117 KPLIQAFRWPEIRTGATVDGVITVVDGDALARGAMVGDLEALEAQRQADDSLDHETPIEE 176
Query: 147 --KEQIVFADSVLLTKTDLQND 166
++Q+ AD VLLTKTDL D
Sbjct: 177 LFEDQLACADMVLLTKTDLLGD 198
>ref|NP_487432.1| (NC_003272) cobalamin synthesis protein [Nostoc sp. PCC 7120]
dbj|BAB75091.1| (AP003592) cobalamin synthesis protein [Nostoc sp. PCC 7120]
Length = 346
Score = 82.0 bits (201), Expect = 8e-15
Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 40/208 (19%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL-SVQYC------ 55
KIP+T+ITGFLGSGKTS + L + +A+++NE G+ +D +L S Q C
Sbjct: 4 KIPVTVITGFLGSGKTSLIRHLLQNNAGRRIAVLVNEFGELGIDGDLLKSCQVCPEDEDG 63
Query: 56 GEKMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPIL----W 111
G + L GC+CC + + + +++ L + + I+IET+GLA P P++ W
Sbjct: 64 GSNIFELTNGCLCCTVQEEFLPTMQELLK----RRDSIDCIVIETSGLALPKPLVKAFRW 119
Query: 112 -------------------TILSDTFLGVHFEIQSVVACVDALNAREHLTNNEA--KEQI 150
+ S TF +++++ A ++ EH T + ++Q+
Sbjct: 120 QEIRNAATVDAVVTVVDCAAVASGTFAS---DLEAIAIQRQADDSLEHETPLQELFEDQL 176
Query: 151 VFADSVLLTKTDLQNDSAALTKLKERIQ 178
AD V+L+KTDL D+A ++++E ++
Sbjct: 177 ACADLVVLSKTDLV-DAATKSQVEELVK 203
>ref|NP_388218.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
pir||B69760 conserved hypothetical protein yciC - Bacillus subtilis
dbj|BAA08970.1| (D50453) homologues to nitrile hydratase region 3'-hypothetical
protein P47K of P. chlororaphis [Bacillus subtilis]
emb|CAB12130.1| (Z99105) similar to hypothetical proteins [Bacillus subtilis]
Length = 397
Score = 81.6 bits (200), Expect = 1e-14
Identities = 57/213 (26%), Positives = 109/213 (50%), Gaps = 35/213 (16%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL----SVQYCG 56
M KIP+T+++G+LG+GKT+ L+ L + +A+I+N++ + +D ++ +
Sbjct: 1 MKKIPVTVLSGYLGAGKTTLLNSILQNREGLKIAVIVNDMSEVNIDAGLVKQEGGLSRTD 60
Query: 57 EKMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTI-LS 115
EK++ ++ GC+CC R DL+ ++ + + I+IE+TG++ P P+ T
Sbjct: 61 EKLVEMSNGCICCTLREDLLIEVEKLAKDGRFD-----YIVIESTGISEPIPVAQTFSYI 115
Query: 116 DTFLGVHF----EIQSVVACVDA-------------LNAREHLTNNEAKE-------QIV 151
D +G+ ++ ++V VDA L+ +E L + +E QI
Sbjct: 116 DEEMGIDLTKFCQLDTMVTVVDANRFWHDYQSGESLLDRKEALGEKDEREIADLLIDQIE 175
Query: 152 FADSVLLTKTDLQNDSAALTKLKERIQALNPSA 184
F D ++L K DL ++ L +L+ ++ L P A
Sbjct: 176 FCDVLILNKCDLVSEQ-ELEQLENVLRKLQPRA 207
>ref|NP_560953.1| (NC_003366) probable cobalamin synthesis related protein
[Clostridium perfringens]
dbj|BAB79743.1| (AP003185) probable cobalamin synthesis related protein
[Clostridium perfringens]
Length = 308
Score = 81.6 bits (200), Expect = 1e-14
Identities = 70/269 (26%), Positives = 131/269 (48%), Gaps = 26/269 (9%)
Query: 6 ITLITGFLGSGKTSFLSEYLNQ-TDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLNA 64
+ +I+GFLG+GKT+ + + L+ + VA++ NE G+ +D +L + K + N+
Sbjct: 3 VDIISGFLGAGKTTLIKKLLDTLVKDEKVAIVENEYGEVGIDGDLLKDRRIEVKEI--NS 60
Query: 65 GCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHFE 124
GC+CC + D +++ ++NY R+IIE +G+AN + +L +I G+
Sbjct: 61 GCICCTIKGDFKQNILDIISNYR-----PDRVIIEPSGVANFSQVLESIKEAHIEGLRIN 115
Query: 125 IQSVVACVDALNAREHLTN--NEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNP 182
++ + VDA N ++ N + + Q+V A++++LT+ + +D +T + I+ +N
Sbjct: 116 MK--ITMVDAQNVHMYMKNFGDFYRSQLVNANTIILTRVEKLSDK-EITHVCNEIKTINN 172
Query: 183 SAEIF--------DKRAID-----YESLFSRKNRARNFMPRMPKDSHSQGFETLSINFEG 229
A I +R I ESL N + + + S + FE +
Sbjct: 173 KANIITTELSKLSPERIIQVSEKKVESLIENINIKKPKRIGLRRVSAPEFFENWGVETPK 232
Query: 230 TMEWSAFGIWLSLLLHQYGTQILRIKGII 258
T E+S L+ + ++LR KGII
Sbjct: 233 TFEYSELVKILNEFQNNKHGEVLRAKGII 261
>ref|NP_254222.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||D82953 conserved hypothetical protein PA5535 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG08920.1|AE004966_2 (AE004966) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 400
Score = 81.3 bits (199), Expect = 1e-14
Identities = 59/217 (27%), Positives = 110/217 (50%), Gaps = 44/217 (20%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALD----QRILSVQYCGEK 58
++P+T+++GFLG+GK++ L+ L +++ VA+I+N++ + +D QR +S+ E+
Sbjct: 4 RLPVTVLSGFLGAGKSTLLNHVLKNRENRRVAVIVNDMSEINIDGSEVQRDVSLNRAEER 63
Query: 59 MLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRR-----IIIETTGLANPAPILWTI 113
++ ++ GC+CC R DL+E + G + R ++IE+TG++ P P+ T
Sbjct: 64 LVEMSNGCICCTLREDLLEEV----------GRLAREGRFDYLLIESTGISEPMPVAETF 113
Query: 114 L----SDTFLGVHFEIQSVVACVDALN------------AREHLTNNEAK--------EQ 149
D L + ++V VD +N +R E + +Q
Sbjct: 114 TFRDELDRSLSDVARLDTMVTVVDGMNFLRDYQEAASLASRGETLGEEDQRSITDLLIDQ 173
Query: 150 IVFADSVLLTKTDLQNDSAALTKLKERIQALNPSAEI 186
+ FAD +L++K DL + S +L ++ LN AEI
Sbjct: 174 VEFADVILVSKIDLIS-SEQREELLAILRQLNAEAEI 209
>sp|P29937|COBW_PSEDE CobW protein
pir||C38164 cobW protein - Pseudomonas sp
gb|AAA25779.1| (M62866) cobW [Pseudomonas denitrificans]
Length = 354
Score = 80.9 bits (198), Expect = 2e-14
Identities = 62/203 (30%), Positives = 98/203 (47%), Gaps = 31/203 (15%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL---SVQYCGE-K 58
KIP T+ITGFLG+GKT+ + L D + + LIINE G +D +L + C E
Sbjct: 10 KIPATVITGFLGAGKTTMIRNLLQNADGKRIGLIINEFGDLGVDGDVLKGCGAEACTEDD 69
Query: 59 MLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPIL----WTIL 114
++ L GC+CC D + ++ L IIIET+GLA P P++ W +
Sbjct: 70 IIELTNGCICCTVADDFIPTMTKLLERENRPD----HIIIETSGLALPQPLIAAFNWPDI 125
Query: 115 SD--TFLGVHFEIQSVVAC----------VDALNAREHLTNNEA------KEQIVFADSV 156
T GV + S VDAL + ++E+ ++Q+ AD +
Sbjct: 126 RSEVTVDGVVTVVDSAAVAAGRFADDHDKVDALRVEDDNLDHESPIEELFEDQLTAADLI 185
Query: 157 LLTKTDLQNDSAALTKLKERIQA 179
+L KTDL D++ L +++ + +
Sbjct: 186 VLNKTDL-IDASGLKAVRDEVSS 207
>ref|XP_088436.4| (XM_088436) hypothetical protein from clone 1659351 [Homo sapiens]
Length = 176
Score = 80.5 bits (197), Expect = 2e-14
Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 13/138 (9%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCG---EKM 59
KIP+T+ITG+LG+GKT+ L+ L + + VA+I+NE G+ + ++ L+V G E+
Sbjct: 41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEW 100
Query: 60 LYLNAGCVCCNKR---LDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSD 116
L L GC+CC+ + L +E+L +++ I++ETTGLA+P + D
Sbjct: 101 LELRNGCLCCSVKDSGLRAIENLMQKKGKFDY-------ILLETTGLADPGAVASMFWVD 153
Query: 117 TFLGVHFEIQSVVACVDA 134
LG + ++ VD+
Sbjct: 154 AELGSDIYLDGIITIVDS 171
>emb|CAC08207.1| (AJ278349) P44k protein [Rhodococcus sp. AJ270]
Length = 399
Score = 80.1 bits (196), Expect = 3e-14
Identities = 56/213 (26%), Positives = 109/213 (50%), Gaps = 40/213 (18%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALD----QRILSVQYCGEK 58
++P+T+++GFLG+GKT+ L+E L + + VA+I+N++ + +D +R +S+ EK
Sbjct: 5 RLPVTVLSGFLGAGKTTLLNEILRNREGRRVAVIVNDMSEINIDSAEVEREISLSRSEEK 64
Query: 59 MLYLNAGCVCCNKRLDLVESLKA--TLNNYEWHGEILRRIIIETTGLANPAPILWTILSD 116
++ + GC+CC R DL+ + A +++ ++IE++G++ P P+ T
Sbjct: 65 LVEMTNGCICCTLREDLLSEISALAAAGRFDY-------LLIESSGISEPLPVAETF--- 114
Query: 117 TFLGVHFEIQSVVACVDALNA--------REHLTNNEAK---------------EQIVFA 153
TF+ + VA +D + R++ + +QI FA
Sbjct: 115 TFIDTDGHALADVARLDTMVTVVDGNSFLRDYTAGGRVEADAPEDERDIADLLVDQIEFA 174
Query: 154 DSVLLTKTDLQNDSAALTKLKERIQALNPSAEI 186
D +L++K DL + L +L +++LN +A I
Sbjct: 175 DVILVSKADLISHQ-HLVELTAVLRSLNATAAI 206
>ref|NP_299116.1| (NC_002488) nitrile hydratase activator [Xylella fastidiosa 9a5c]
pir||B82633 nitrile hydratase activator XF1830 [imported] - Xylella fastidiosa
(strain 9a5c)
gb|AAF84636.1|AE004004_7 (AE004004) nitrile hydratase activator [Xylella fastidiosa 9a5c]
Length = 442
Score = 80.1 bits (196), Expect = 3e-14
Identities = 58/217 (26%), Positives = 110/217 (49%), Gaps = 39/217 (17%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL-----SVQYCGE 57
++P+T+ +GFLG+GKT+ L+ LN D VA+I+N++ + +D +++ ++ E
Sbjct: 11 RLPVTVFSGFLGAGKTTLLNRLLNNRDGLRVAVIVNDMSEVNIDAQLVRDGGAALSRTDE 70
Query: 58 KMLYLNAGCVCCNKRLDLVESLK--ATLNNYEWHGEILRRIIIETTGLANPAPILWTIL- 114
++ + GC+CC R DL + +K A Y++ ++IE+TG+ P P+ T
Sbjct: 71 TLVEFSNGCICCTLRDDLSKEVKRLALEQRYDY-------LLIESTGIGEPMPVAATFAV 123
Query: 115 --SDTF-LGVHFEIQSVVACVD---------ALNAREHLTNNEAK-----------EQIV 151
+D F L + ++V VD ++N L +QI
Sbjct: 124 RDADGFCLSDVARLDTMVTVVDGSQFTALFSSMNTLADLGQQADSDDTRSLADLLGQQIE 183
Query: 152 FADSVLLTKTDLQNDSAALTKLKERIQALNPSAEIFD 188
FAD+++++K DL D+ L +++ ++ LN A+I +
Sbjct: 184 FADTIVISKCDL-IDTTQLARVRAVVRGLNRDAQIIE 219
>ref|NP_640632.1| (NC_003919) nitrile hydratase activator [Xanthomonas axonopodis pv.
citri str. 306]
gb|AAM35168.1| (AE011652) nitrile hydratase activator [Xanthomonas axonopodis pv.
citri str. 306]
Length = 441
Score = 80.1 bits (196), Expect = 3e-14
Identities = 58/217 (26%), Positives = 111/217 (50%), Gaps = 39/217 (17%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL-----SVQYCGE 57
++P+T+++GFLG+GKT+ L+ L+ D VA+I+N++ + +D +++ +++ E
Sbjct: 10 RLPVTVLSGFLGAGKTTLLNRILHNRDGLRVAVIVNDMSEVNIDAQLVREGGAALRRTEE 69
Query: 58 KMLYLNAGCVCCNKRLDLVESLK--ATLNNYEWHGEILRRIIIETTGLANPAPILWTIL- 114
++ + GC+CC R DL++ ++ A Y++ ++IE+TG+A P P+ T
Sbjct: 70 TLVEFSNGCICCTLRDDLLQEVRRLAEQGRYDY-------LLIESTGIAEPMPVAATFAV 122
Query: 115 --SDTF-LGVHFEIQSVVACVDALNAREHLTNNEA--------------------KEQIV 151
+D F L + ++V VD E + EQ+
Sbjct: 123 RDADGFSLSDIARLDTMVTVVDGSRFLEDFGSAATLADLGQQAGPDDTRGLVQLLGEQVE 182
Query: 152 FADSVLLTKTDLQNDSAALTKLKERIQALNPSAEIFD 188
FAD ++++K D + D+ L +L+ ++ALN A I D
Sbjct: 183 FADVLVISKCD-RIDAQQLQRLRAVLRALNRDAAIVD 218
>ref|NP_635652.1| (NC_003902) nitrile hydratase activator [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gb|AAM39576.1| (AE012122) nitrile hydratase activator [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 441
Score = 80.1 bits (196), Expect = 3e-14
Identities = 59/217 (27%), Positives = 111/217 (50%), Gaps = 39/217 (17%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL-----SVQYCGE 57
++P+T+++GFLG+GKT+ L+ L+ + VA+I+N++ + +D ++L +++ E
Sbjct: 10 RLPVTVLSGFLGAGKTTLLNRILHNREGLRVAVIVNDMSEINIDAQLLREGGAALRRTDE 69
Query: 58 KMLYLNAGCVCCNKRLDLVESLK--ATLNNYEWHGEILRRIIIETTGLANPAPILWTIL- 114
++ + GC+CC R DL++ +K A+ Y++ ++IE+TG+A P P+ T
Sbjct: 70 TLVEFSNGCICCTLRDDLLQEVKRLASERRYDY-------LLIESTGIAEPMPVAATFAV 122
Query: 115 --SDTF-LGVHFEIQSVVACVDALNAREHLTNNEA--------------------KEQIV 151
+D F L + ++V VD E + +Q+
Sbjct: 123 RDADGFSLSDIARLDTMVTVVDGSRFLEDFGSAATLAELGQQAGPDDTRGLVQLLGDQVE 182
Query: 152 FADSVLLTKTDLQNDSAALTKLKERIQALNPSAEIFD 188
FAD ++++K D Q D+ L +L ++ALN A I D
Sbjct: 183 FADVLVISKCD-QIDTPRLHRLHAVLRALNRDAAIVD 218
>ref|NP_357420.1| (NC_003063) AGR_L_3257p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK90205.1| (AE008365) AGR_L_3257p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 431
Score = 79.3 bits (194), Expect = 5e-14
Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 53/226 (23%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL-----SVQYC 55
M K+P+T+++GFLG+GKT+ L+ L D VALI+N++ + +D ++ ++
Sbjct: 32 MKKLPVTVLSGFLGAGKTTLLNHILANRDGLRVALIVNDMSEINIDAALVRDGGANLSRT 91
Query: 56 GEKMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTI-- 113
E+++ + GC+CC R DL+ ++A + ++IE+TG+A P P+ T
Sbjct: 92 EEQLVEMTNGCICCTLRDDLLTEVRALAEQGRFD-----YLLIESTGIAEPLPVAATFDF 146
Query: 114 -------LSDTFLGVHFEIQSVVACVDALNAREHLTNNE--------------------A 146
LSD ++ ++V VDA N +++
Sbjct: 147 RDENGRSLSDV-----AQLDTMVTVVDAANLLNDYGSSDFLADRGETAGDGDNRTIVDLL 201
Query: 147 KEQIVFADSVLLTK----TDLQNDSAALTKLKERIQALNPSAEIFD 188
EQI FAD V+L K T + D+A ++ I LNP A++ +
Sbjct: 202 VEQIEFADVVVLNKIGTATPEERDAA-----RKIIVGLNPDAKLIE 242
>ref|NP_533681.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL43997.1| (AE009248) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 400
Score = 79.3 bits (194), Expect = 5e-14
Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 53/226 (23%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL-----SVQYC 55
M K+P+T+++GFLG+GKT+ L+ L D VALI+N++ + +D ++ ++
Sbjct: 1 MKKLPVTVLSGFLGAGKTTLLNHILANRDGLRVALIVNDMSEINIDAALVRDGGANLSRT 60
Query: 56 GEKMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTI-- 113
E+++ + GC+CC R DL+ ++A + ++IE+TG+A P P+ T
Sbjct: 61 EEQLVEMTNGCICCTLRDDLLTEVRALAEQGRFD-----YLLIESTGIAEPLPVAATFDF 115
Query: 114 -------LSDTFLGVHFEIQSVVACVDALNAREHLTNNE--------------------A 146
LSD ++ ++V VDA N +++
Sbjct: 116 RDENGRSLSDV-----AQLDTMVTVVDAANLLNDYGSSDFLADRGETAGDGDNRTIVDLL 170
Query: 147 KEQIVFADSVLLTK----TDLQNDSAALTKLKERIQALNPSAEIFD 188
EQI FAD V+L K T + D+A ++ I LNP A++ +
Sbjct: 171 VEQIEFADVVVLNKIGTATPEERDAA-----RKIIVGLNPDAKLIE 211
>ref|NP_645466.1| (NC_003923) ORFID:MW0649~hypothetical protein, similar to cobalamin
synthesis related protein [Staphylococcus aureus subsp.
aureus MW2]
dbj|BAB94514.1| (AP004824) ORFID:MW0649~hypothetical protein, similar to cobalamin
synthesis related protein [Staphylococcus aureus subsp.
aureus MW2]
Length = 308
Score = 79.0 bits (193), Expect = 7e-14
Identities = 78/320 (24%), Positives = 143/320 (44%), Gaps = 41/320 (12%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQ--TDHQGVALIINEIGQAALDQRILSVQYCGEKML 60
KI I++I GFLGSGKT+ L+ Y+++ + + + +I+NE G +D +S + ++
Sbjct: 8 KIRISIINGFLGSGKTTLLTHYISELLKNDEKIKIIMNEFGTFDIDSNSISNEI---EVH 64
Query: 61 YLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLG 120
L GCVCC+ + +LV LKA + + +IIETTG+A+P +L D +
Sbjct: 65 SLINGCVCCDLKQELVYELKAIALKGD-----VNHVIIETTGIAHPLELL-VACQDPQIV 118
Query: 121 VHFEIQSVVACVDALN--AREHLTNNEA---KEQIVFADSVLLTKTDLQNDSAALTKLKE 175
FE + +DA R T N ++Q+ +D +++ K DL D +
Sbjct: 119 NFFEKPIIYGVLDATRFLERHQYTENTVSLMEDQLKLSDMIIINKIDLITD--------D 170
Query: 176 RIQALNPSAEIFDKRAIDYESLFSRKNRARNFMPRMPKD-----SHSQGFETLSINFEGT 230
R++ ++ + Y++ + + + + ++ H G ++++ F G
Sbjct: 171 RLERIDKQLGMICASIPTYKTTYGKVSLEELDLTVKDREISSHHHHHHGIKSMTYTFTGP 230
Query: 231 MEWSAFGIWLSLLLHQYGTQILRIKGIIDIGSGFLVSINGVMHVIY----PPKHILKDQN 286
++ F ++ L +LR+KG + F N + Y P I+ Q
Sbjct: 231 IDRQLFYQFIMKL----PESVLRLKGYV----SFRDQPNAIYEFQYAYGLPDYGIIGMQL 282
Query: 287 GSNLVFIMRHLEREKILNSL 306
+V I L+ I N L
Sbjct: 283 PLTIVIIGETLDTNHIRNQL 302
>ref|NP_371211.1| (NC_002758) hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
ref|NP_373897.1| (NC_002745) hypothetical protein, similar to cobalamin synthesis
related protein [Staphylococcus aureus subsp. aureus
N315]
dbj|BAB41875.1| (AP003131) ORFID:SA0642~hypothetical protein, similar to cobalamin
synthesis related protein [Staphylococcus aureus subsp.
aureus N315]
dbj|BAB56849.1| (AP003360) hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
Length = 308
Score = 79.0 bits (193), Expect = 7e-14
Identities = 83/318 (26%), Positives = 144/318 (45%), Gaps = 37/318 (11%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQ--TDHQGVALIINEIGQAALDQRILSVQYCGEKML 60
KI I++I GFLGSGKT+ L+ Y+++ + + + +I+NE G +D +S + ++
Sbjct: 8 KIRISIINGFLGSGKTTLLTHYISELLKNDEKIKIIMNEFGTFDIDSNSISNEI---EVH 64
Query: 61 YLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLG 120
L GCVCC+ + +LV LKA + + +IIE TG+A+P +L D +
Sbjct: 65 SLINGCVCCDLKQELVYELKAIALKGD-----VNHVIIEATGIAHPLELL-VACQDPQIV 118
Query: 121 VHFEIQSVVACVDALN--AREHLTNNEA---KEQIVFADSVLLTKTDLQNDSAALTKLKE 175
FE + +DA R T N +EQ+ +D +++ K DL D +L K+ +
Sbjct: 119 NFFEKPIIYGVLDATRFLERHQYTENTVSLMEEQLKLSDMIIINKIDLITDD-SLEKIDK 177
Query: 176 RIQALNPSAEIFDKR--AIDYESL-FSRKNRARNFMPRMPKDSHSQGFETLSINFEGTME 232
++ + S + + E L + K+R + H G ++++ F G ++
Sbjct: 178 QLGMICASIPTYKTTYGKVSLEELDLTVKDREIS-----SHHHHHHGIKSMTYTFTGPID 232
Query: 233 WSAFGIWLSLLLHQYGTQILRIKGIIDIGSGFLVSINGVMHVIY----PPKHILKDQNGS 288
F ++ L +LR+KG + F N + Y P I+ Q
Sbjct: 233 RQLFYQFIMKL----PESVLRLKGYV----SFRNQPNAIYEFQYAYGLPDYGIIGMQLPL 284
Query: 289 NLVFIMRHLEREKILNSL 306
+V I L+ I N L
Sbjct: 285 TIVIIGETLDTNHIRNQL 302
>dbj|BAB62138.1| (AB054643) hypothetical protein [Hydrogenobacter thermophilus]
Length = 238
Score = 79.0 bits (193), Expect = 7e-14
Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 13/160 (8%)
Query: 8 LITGFLGSGKTSFLSEYLNQ-TDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGC 66
+ITGFLGSGKT+ L + + ++ +A+I+NE G+ +D +IL Y ++L L GC
Sbjct: 6 VITGFLGSGKTTLLMNSVREHLKNRRIAIIVNEFGEVGVDGKILKNAY--SQVLELPEGC 63
Query: 67 VCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHFEIQ 126
+CC + ++L Y+ E+L ++ET+G A P P++ ++ S LG ++
Sbjct: 64 ICCTLHAEFEKALWEIRQKYD--PEVL---LVETSGAAEPFPVMLSLQS---LGC--TVE 113
Query: 127 SVVACVDALNAREHLTNNEAKEQIVFADSVLLTKTDLQND 166
V+ +DA N ++ + QI ++ ++L KTDL ++
Sbjct: 114 GVMCLIDAYNFEKYSHEPTTRHQIGSSNMLVLNKTDLVDE 153
>ref|NP_014426.1| (NC_001146) Hypothetical ORF; Ynr029cp [Saccharomyces cerevisiae]
sp|P53729|YN8H_YEAST HYPOTHETICAL 48.1 KD PROTEIN IN SEC12-SSK2 INTERGENIC REGION
pir||S63360 hypothetical protein YNR029c - yeast (Saccharomyces cerevisiae)
emb|CAA96309.1| (Z71644) ORF YNR029c [Saccharomyces cerevisiae]
Length = 429
Score = 77.8 bits (190), Expect = 2e-13
Identities = 55/207 (26%), Positives = 105/207 (50%), Gaps = 25/207 (12%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCG---EKM 59
+IP+++ITG+LGSGK++ L + + + +A+I+NE G ++ ++ ++++ ++
Sbjct: 70 RIPVSIITGYLGSGKSTLLEKIALKGADKKIAVILNEFGDSSEIEKAMTIKNGSNSYQEW 129
Query: 60 LYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFL 119
L L GC+CC+ + +KA + E + I++ET+G+A+PAPI D L
Sbjct: 130 LDLGNGCLCCSLK---NIGVKAIEDMVERSPGKIDYILLETSGIADPAPIAKMFWQDEGL 186
Query: 120 GVHFEIQSVVA---------CVDALNAREHLTNNE---------AKEQIVFADSVLLTKT 161
I ++ C+D ++ H ++ A Q+ AD +++ K
Sbjct: 187 NSSVYIDGIITVLDCEHILKCLDDISIDAHWHGDKVGLEGNLTIAHFQLAMADRIIMNKY 246
Query: 162 DLQNDSAALTK-LKERIQALNPSAEIF 187
D S + K LKER++ +N A +F
Sbjct: 247 DTIEHSPEMVKQLKERVREINSIAPMF 273
>pir||T03530 cobW protein - Rhodobacter capsulatus
gb|AAB70522.1| (AF017138) cobalamin synthesis protein [Rhodobacter capsulatus]
gb|AAC16183.1| (AF010496) CobW protein [Rhodobacter capsulatus]
Length = 348
Score = 77.4 bits (189), Expect = 2e-13
Identities = 79/295 (26%), Positives = 133/295 (44%), Gaps = 42/295 (14%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL---SVQYC-G 56
+ KIP+T+ITGFLG+GKT+ + + + + +A+++NE G +D IL + + C
Sbjct: 4 LTKIPVTVITGFLGAGKTTLIRHLMANPEGRKLAVLVNEFGTVGVDGEILRQCADENCPD 63
Query: 57 EKMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPIL----W- 111
E ++ L GC+CC + + +++A + IL IET+GLA P P+L W
Sbjct: 64 ENIVELANGCICCTVADEFIPTIEALMARPVRPDHIL----IETSGLALPKPLLKAFDWP 119
Query: 112 ----TILSDTFLGVHFEIQSV--------VACVDALNAREHLTNNEA------KEQIVFA 153
I D + V + ++V VA VDA + + ++E ++QI A
Sbjct: 120 AIRSKITVDGVIAV-ADAEAVAAGRFAPDVAAVDAQRQADDIIDHETPLSEVFEDQIACA 178
Query: 154 DSVLLTKTDLQNDSAALT-------KLKERIQALNPSAEIFDKRAIDYESLFSRKNRARN 206
D VLL+K DL T +L ++ L + + D + I + + A
Sbjct: 179 DIVLLSKADLAGAEGLATARALIEAELPRKLPILPLTEGVIDPKVILGLGAAAEDDLAAR 238
Query: 207 FMPRMPKDSHS-QGFETLSINFEGTMEWSAFGIWLSLLLHQYGTQILRIKGIIDI 260
D H F+T+ I + +A + L + ILR+KG I +
Sbjct: 239 PSHHDDHDDHEHDDFDTVVIELPEIADPAALVAAIERLARE--QNILRVKGHIAV 291
>sp|P31521|P47K_PSECL 47 kDa protein (P47K)
pir||D42725 nitrile hydratase region 3'-hypothetical protein P47K - Pseudomonas
chlororaphis (strain B23)
dbj|BAA14247.1| (D90216) P47K [Pseudomonas chlororaphis]
Length = 419
Score = 77.0 bits (188), Expect = 3e-13
Identities = 57/212 (26%), Positives = 101/212 (46%), Gaps = 35/212 (16%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALD----QRILSVQYCGEK 58
++P+T+++GFLG+GKT+ L+ L VA+I+N++ + LD QR +S+ ++
Sbjct: 9 RLPVTVLSGFLGAGKTTLLNAILRNRQGLRVAVIVNDMSEVNLDAESVQRDVSLHRGRDE 68
Query: 59 MLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPI--------- 109
++ ++ GC+CC R DL+E + + ++IE+TG++ P P+
Sbjct: 69 LIEMSNGCICCTLRADLLEQISDLARQQRFD-----YLLIESTGISEPMPVAETFAFLDT 123
Query: 110 -------------LWTILSDTFLGVHFEIQSVVACVD--ALNAREHLTNNEAKEQIVFAD 154
L T++ + E VA D A + HL + EQ+ +A+
Sbjct: 124 EGFSLSELARLDTLVTVVDGSQFQALLESTDTVARADTEAHTSTRHLA-DLLIEQVEYAN 182
Query: 155 SVLLTKTDLQNDSAALTKLKERIQALNPSAEI 186
+L+ K DL D + + LNPSA I
Sbjct: 183 VILVNKRDL-IDEPGYQAVHAILAGLNPSARI 213
>ref|NP_241232.1| (NC_002570) BH0366~unknown conserved protein in others [Bacillus
halodurans]
dbj|BAB04085.1| (AP001508) BH0366~unknown conserved protein in others [Bacillus
halodurans]
Length = 311
Score = 77.0 bits (188), Expect = 3e-13
Identities = 55/187 (29%), Positives = 97/187 (51%), Gaps = 16/187 (8%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQG--VALIINEIGQAALDQRILSVQYCGEKMLY 61
I + +++GFLGSGK++ L + Q +G + +++NE+G+ ++D I+ ++ML
Sbjct: 6 IDLYILSGFLGSGKSTLLKRLIEQEQARGNKIGVLMNELGEVSVDSSIVPKDTPLKEML- 64
Query: 62 LNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGV 121
GC+CC + +L L++ + YE L I IE TG A+P ++ F G
Sbjct: 65 --NGCICCTIQGELSAQLQSFIEEYE-----LDVIFIEATGAAHPLEVVEACTHPVFAG- 116
Query: 122 HFEIQSVVACVDALNAREHLTNNEAKE----QIVFADSVLLTKTDLQNDSAALTKLKERI 177
++ V+ V+A E + + K+ Q+ FAD +++ K D D A + +L I
Sbjct: 117 QVRVRGVLTVVNARQWIEGKMSIKIKKLMEAQVTFADLIVVNKVDQVTD-AQVEQLTTSI 175
Query: 178 QALNPSA 184
+ LNP A
Sbjct: 176 KDLNPKA 182
>ref|NP_232918.1| (NC_002506) conserved hypothetical protein [Vibrio cholerae]
pir||D82449 conserved hypothetical protein VCA0527 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF96430.1| (AE004383) conserved hypothetical protein [Vibrio cholerae]
Length = 329
Score = 76.3 bits (186), Expect = 4e-13
Identities = 48/163 (29%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 3 KIPITLITGFLGSGKTSFLSEYL-NQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLY 61
++P +ITGFLG GKT+ + L + H+ A+++NE G+ +D I+S Q G +
Sbjct: 4 RVPTNIITGFLGVGKTTAILHLLATKPAHEKWAVLVNEFGEIGIDGAIMSEQ--GAMIKE 61
Query: 62 LNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGV 121
+ GC+CC + + + A L R+IIE TGL +P ++ T++S+ +
Sbjct: 62 VPGGCLCCTAGVPMSVGINALLRQKP------DRLIIEPTGLGHPKQVVATLISEQY-QP 114
Query: 122 HFEIQSVVACVDA--LNAREHLTNNEAKEQIVFADSVLLTKTD 162
+ ++++ +A +D L+ ++ +N +Q+ AD VL K D
Sbjct: 115 YVDLKATIALMDPRHLSMDKYRSNQNFNDQLASADIVLGNKVD 157
>ref|NP_541156.1| (NC_003318) LOW AFFINITY ZINC TRANSPORT MEMBRANE PROTEIN [Brucella
melitensis]
gb|AAL53420.1| (AE009656) LOW AFFINITY ZINC TRANSPORT MEMBRANE PROTEIN [Brucella
melitensis]
Length = 400
Score = 76.3 bits (186), Expect = 4e-13
Identities = 55/216 (25%), Positives = 107/216 (49%), Gaps = 41/216 (18%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL-----SVQYCGE 57
++P+T+++GFLG+GKT+ L+ LN +++ VA+I+N++ + +D ++ + E
Sbjct: 4 RLPVTVLSGFLGAGKTTLLNHVLNNRENRRVAVIVNDMSEINVDAALIREGGADLSRTEE 63
Query: 58 KMLYLNAGCVCCNKRLDLVESLK--ATLNNYEWHGEILRRIIIETTGLANPAPILWTILS 115
+++ + GC+CC R DL++ + A +++ ++IE+TG++ P P+ T
Sbjct: 64 QLVEMTNGCICCTLRDDLLKEVSQLAAQGRFDY-------LLIESTGISEPLPVAATFEF 116
Query: 116 DTFLGVHF----EIQSVVACVDALNAREHLTNNE--------------------AKEQIV 151
G + ++V VDA N + + + EQI
Sbjct: 117 RDERGKSLSDGARLDTMVTVVDAANFLKDYASGDFLRDRGESLGEEDERTLVDLLVEQIE 176
Query: 152 FADSVLLTKTDL-QNDSAALTKLKERIQALNPSAEI 186
FA+ V+L K + + AL ++ I++LNP A I
Sbjct: 177 FANVVVLNKISMVSKEECALA--RKVIRSLNPDARI 210
>ref|NP_518166.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD13573.1| (AL646057) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 424
Score = 75.9 bits (185), Expect = 6e-13
Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 48/216 (22%)
Query: 8 LITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL--------SVQYCGEKM 59
+++GFLG+GKT+ L+ L + + VA+I+N++ +D +++ + E+M
Sbjct: 1 MLSGFLGAGKTTLLNHVLANREGKRVAVIVNDLSDVNIDAQLVGDGTATSAQLSRTDERM 60
Query: 60 LYLNAGCVCCNKRLDLVESLK--ATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDT 117
+ L+ GC+CC R DL++ + A + +++ ++IE+TG+A P PI T T
Sbjct: 61 VELSNGCICCTLREDLLDEIARLAREDRFDY-------LLIESTGVAEPLPIAETF---T 110
Query: 118 FLGVHFEIQSVVACVDAL----NAREHLTNNEAK-----------------------EQI 150
F + S +A +D + +A+ L + +A EQ+
Sbjct: 111 FEDAEGRLLSDLARLDTMVTVVDAQHFLADYDAADFLADRGQARDEDDDRTVVDLLIEQV 170
Query: 151 VFADSVLLTKTDLQNDSAALTKLKERIQALNPSAEI 186
F D ++L KTDL D A +L + +LNP A I
Sbjct: 171 EFCDVIVLNKTDLV-DEAERERLAGILHSLNPRARI 205
>pir||PN0571 hypothetical protein 133 - Rhodococcus erythropolis (fragment)
dbj|BAA03350.1| (D14454) P47K protein [Rhodococcus erythropolis]
prf||1920223D ORF P47K [Rhodococcus erythropolis]
Length = 133
Score = 75.9 bits (185), Expect = 6e-13
Identities = 38/124 (30%), Positives = 74/124 (59%), Gaps = 12/124 (9%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALD----QRILSVQYCGEK 58
++P+T+++GFLG+GKT+ L+E L + + VA+I+N++ + +D +R +S+ EK
Sbjct: 5 RLPVTVLSGFLGAGKTTLLNEILRNREGRRVAVIVNDMSEINIDSAEVEREISLSASEEK 64
Query: 59 MLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTF 118
++ + GC+CC R DL+ + A + + ++IE++G++ P P+ T TF
Sbjct: 65 LVEMTNGCICCTLREDLLSEISALAADRRFD-----YLLIESSGISEPLPVAETF---TF 116
Query: 119 LGVH 122
+ H
Sbjct: 117 IDTH 120
>ref|NP_251635.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||D83276 conserved hypothetical protein PA2945 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06333.1|AE004721_1 (AE004721) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 375
Score = 75.1 bits (183), Expect = 1e-12
Identities = 86/353 (24%), Positives = 149/353 (41%), Gaps = 56/353 (15%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL-------SVQ 53
+ K+P+T++TGFLG+GKT+ L L+ + + +A+I+NE G+ +D IL S +
Sbjct: 29 LAKLPVTIVTGFLGAGKTTLLRHMLDNAEGRRIAVIVNEFGELGIDGEILKQCSIGCSEE 88
Query: 54 YCGEKMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPIL--- 110
++ L GC+CC + + ++ + G+ L +I+IET+GLA P P++
Sbjct: 89 EAQGRVFELANGCLCCTVQEEFFPVMRELVAR---RGD-LDQILIETSGLALPKPLVQAF 144
Query: 111 -WTILSD--TFLGVHFEIQSVVACVDALNAREHLTNNEAK----------------EQIV 151
W + + T V + S A + + + +Q+
Sbjct: 145 QWPEIRNACTVDAVITVVDSPAVAAGTFAAHPEQVDQQRRQDPNLDHESPLHELFEDQLA 204
Query: 152 FADSVLLTKTDLQNDSAALTKLKERIQALNPSAEIF---DKRAIDYESLFSRKNRARNFM 208
AD V+L K D Q D+ AL +++ I P+A + + L A +
Sbjct: 205 SADLVILNKAD-QLDAEALARVRAEIAGELPAAVKIVEASRGELPLPVLLGLNAEAELHI 263
Query: 209 PRMPKDSHSQGFETLSINFEGTMEWSAFGIWL-----SLLLHQYGT-----QILRIKGII 258
P +G E + E+ +F + L + LL G ILRIKG
Sbjct: 264 DGRPTHHDHEGHEDHDHD-----EFDSFHVDLPEVEEAALLEALGELVERHDILRIKGFA 318
Query: 259 DI-GSGFLVSINGV---MHVIYPPKHILKDQNGSNLVFIMRHLEREKILNSLK 307
I G + + GV + K + + + LV I + L++ I N L+
Sbjct: 319 AIPGKPMRLLVQGVGKRFDRHFDRKWLADEARSTRLVVIGQELDQAAIANQLR 371
>ref|NP_619415.1| (NC_003552) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM07895.1| (AE011176) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 396
Score = 74.7 bits (182), Expect = 1e-12
Identities = 55/182 (30%), Positives = 95/182 (51%), Gaps = 13/182 (7%)
Query: 8 LITGFLGSGKTSFLSEYLNQTDHQG--VALIINEIGQAALDQRILSVQYCGEKMLYLNAG 65
++ GFLGSGKT+ + + + +G A+I+NEIG+ +D +S G + + +G
Sbjct: 18 ILGGFLGSGKTTTIRKLVETPGIKGEKTAVIVNEIGEIGIDGDTVSAG--GVETREITSG 75
Query: 66 CVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHFEI 125
C+CC R+ L ++L++ + +Y +IIE TG+A P I IL+ G+ +
Sbjct: 76 CICCTLRISLEQTLRSLMQDYR-----PETVIIEPTGIAFPKQIKDNILAMNIPGI--SM 128
Query: 126 QSVVACVDALNAR-EHLTNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNPSA 184
+V +DA + E N K QI A+ + + K DL D +L ++ ++ +NP A
Sbjct: 129 APIVNILDASRFKPEESLQNFIKYQIEDAEVLCINKVDL-IDRVSLLEICVFLRKMNPKA 187
Query: 185 EI 186
I
Sbjct: 188 RI 189
>ref|NP_102976.1| (NC_002678) cobalamin synthesis protein cobW [Mesorhizobium loti]
dbj|BAB48762.1| (AP002997) cobalamin synthesis protein; CobW [Mesorhizobium loti]
Length = 345
Score = 74.3 bits (181), Expect = 2e-12
Identities = 55/192 (28%), Positives = 89/192 (45%), Gaps = 36/192 (18%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCG------ 56
++P T++TGFLG+GKT+ + L + +A+I+NE G +D IL + CG
Sbjct: 7 RVPCTVVTGFLGAGKTTLVRHLLENAGGKRIAIIVNEFGDIGIDGEIL--KGCGIDTCPE 64
Query: 57 EKMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSD 116
E ++ L GC+CC D V +L L+ + I+IET+GLA P P++
Sbjct: 65 ENIVELANGCICCTVADDFVPALDQILS----LNPKVDHILIETSGLALPKPLVQAFQWP 120
Query: 117 TFLGVHFEIQSVVACVDALNAREHLTNNEA-----------------------KEQIVFA 153
T + + V+A VD E N+ ++QI A
Sbjct: 121 T-VKSRVTVDGVIAVVDGPALAEGRVANDMDALQAQRAGDDSLDHDDPVEELFEDQIACA 179
Query: 154 DSVLLTKTDLQN 165
D ++L+K+DL +
Sbjct: 180 DLIILSKSDLMD 191
>ref|NP_522178.1| (NC_003296) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
emb|CAD17768.1| (AL646079) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 367
Score = 73.9 bits (180), Expect = 2e-12
Identities = 54/201 (26%), Positives = 106/201 (51%), Gaps = 21/201 (10%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL--SVQYCGEKML 60
+IP+T+ TGFLG+GKT+ LS + + +A+++NE G+ ++D +L + G ++
Sbjct: 4 RIPVTVFTGFLGAGKTTLLSGLIRDNKQRRLAILVNEFGEVSIDGALLRSDGERGGAEVH 63
Query: 61 YLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLG 120
L+ G + + D + +++A ++ G I ++IET+GLA P ++ ++ S+ L
Sbjct: 64 DLSNGLIAYDDDADFLPTMQAL---WQRRGTI-DHVLIETSGLALPTAVMESLQSEA-LA 118
Query: 121 VHFEIQSVVACVDA----LNAREHLTNNEA---------KEQIVFADSVLLTKTDLQNDS 167
+F + + +A VD + +++A ++Q+ AD V+L K D +
Sbjct: 119 PYFVLDATLAVVDTPLLLSGGFDRAADDDATQTPIASLFEQQLANADIVVLNKIDALGED 178
Query: 168 AALTKLKERIQALNPSAEIFD 188
A L + R++AL PS +
Sbjct: 179 AQL-DAEARVRALAPSVRFIE 198
>ref|XP_036310.6| (XM_036310) similar to COBW-like protein [Homo sapiens]
Length = 156
Score = 73.6 bits (179), Expect = 3e-12
Identities = 42/113 (37%), Positives = 69/113 (60%), Gaps = 13/113 (11%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCG---EKM 59
KIP+T+ITG+LG+GKT+ L+ L + + VA+I+NE G+ + ++ L+V G E+
Sbjct: 41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEW 100
Query: 60 LYLNAGCVCCNKR---LDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPI 109
L L GC+CC+ + L +E+L +++ I++ETTGLA+P I
Sbjct: 101 LELRNGCLCCSVKDSGLRAIENLMQKKGKFDY-------ILLETTGLADPGII 146
>ref|NP_404875.1| (NC_003143) putative cobalamin synthesis protein [Yersinia pestis]
emb|CAC90110.1| (AJ414147) putative cobalamin synthesis protein [Yersinia pestis]
Length = 327
Score = 70.1 bits (170), Expect = 3e-11
Identities = 50/174 (28%), Positives = 90/174 (50%), Gaps = 13/174 (7%)
Query: 8 LITGFLGSGKTSFLSEYLNQ-TDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGC 66
LITGFLG GKT+ + L Q +H+ A+++NE G+ +D +L+ G + + GC
Sbjct: 6 LITGFLGCGKTTTIRHLLAQKPEHEKWAVLVNEFGEIGIDGALLADS--GAVLKEIPGGC 63
Query: 67 VCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHFEIQ 126
+CC L + L L + R++IE TGL +P IL + SD + +++
Sbjct: 64 MCCVNGLPMQIGLNMLLQQAK-----PDRLLIEPTGLGHPKQILSLLTSDIY-QPWIDLR 117
Query: 127 SVVACVDA--LNAREHLTNNEAKEQIVFADSVLLTKTDLQN--DSAALTKLKER 176
+ + +DA L+ + N ++Q+ AD +++ K D D+A L + +++
Sbjct: 118 ATLCLLDARQLSEPRYTENENFRDQLAAADIIVVNKQDTYRSADNAVLQQWQQK 171
>ref|NP_629958.1| (NC_003888) putative ATP/GTP-binding protein [Streptomyces
coelicolor A3(2)]
pir||T35871 hypothetical protein SC9B10.02 - Streptomyces coelicolor
emb|CAA15792.1| (AL009204) putative ATP/GTP-binding protein [Streptomyces
coelicolor A3(2)]
Length = 362
Score = 68.2 bits (165), Expect = 1e-10
Identities = 45/166 (27%), Positives = 83/166 (49%), Gaps = 7/166 (4%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYL 62
+IP+ ++ GFLGSGKT+ L+ L+++ + ++N+ G +D ++ G+ + L
Sbjct: 9 QIPVVVLAGFLGSGKTTLLNHLLHRSGGSRIGAVVNDFGSIEIDAMAVA-GALGDSTVSL 67
Query: 63 NAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVH 122
GC+CC ++ A L E ++ I+IE +GLA P ++ +L+ G+
Sbjct: 68 GNGCLCCAVDASELDGYLARLARPEAGIDV---IVIEASGLAEPQELVRMLLASEQPGIV 124
Query: 123 FEIQSVVACVDALNARE-HLTNNEAKEQIVFADSVLLTKTDLQNDS 167
+ +V VDA + + E + AD V++ KTD D+
Sbjct: 125 Y--GGLVEVVDAAEFDDTRARHPEIDRHLALADLVVVNKTDRATDA 168
>emb|CAC28817.1| (AL513466) conserved hypothetical protein [Neurospora crassa]
Length = 386
Score = 66.2 bits (160), Expect = 5e-10
Identities = 56/167 (33%), Positives = 84/167 (49%), Gaps = 20/167 (11%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQ----TDHQGVALIINEIGQAALDQRILSVQYCGEKM 59
IPIT+ITGFLGSGKT+ + L Q +AL+ NE G A+D ++ S
Sbjct: 9 IPITIITGFLGSGKTTLILNLLPQLRAANPSYRLALLKNEFGDLAVDSQLASSSAIAGVS 68
Query: 60 LYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILR--RIIIETTGLANPAPILWTI---L 114
LN GC+CCN LV L L+ + +R RI+IET+G A PA + +
Sbjct: 69 ELLN-GCICCN----LVGQLSVALSELQ---STVRPDRIVIETSGSAFPATLALEVNRLA 120
Query: 115 SDTFLGVHFEIQSVVACVDALNAREHL-TNNEAKEQIVFADSVLLTK 160
+T G + + VV+ +D N + + T+ A+ Q + D ++ K
Sbjct: 121 RET--GGQYVLDGVVSVIDVENWKGYEDTSYTARIQARYTDLIVFNK 165
>ref|NP_619243.1| (NC_003552) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM07723.1| (AE011158) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 489
Score = 65.5 bits (158), Expect = 8e-10
Identities = 55/189 (29%), Positives = 103/189 (54%), Gaps = 21/189 (11%)
Query: 6 ITLITGFLGSGKTSF---LSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYL 62
+ ++ GFLGSGKT+ + +YL + + +A+I+NEIG+ +D I ++ G +
Sbjct: 3 VIVVGGFLGSGKTTTVINMGKYLAEKGKK-IAIIVNEIGEIGIDGDI--IKKFGFDTKEI 59
Query: 63 NAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPIL--WTILSDTFLG 120
+GC+CC ++ L ++ + Y+ +IL +IE TG+A P I + +++ LG
Sbjct: 60 TSGCICCTLKMGLRTTVDTLMKEYK--PDIL---MIEPTGIAFPNSIKNEFKLMN---LG 111
Query: 121 VHFEIQSVVACVDALNAREHL---TNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERI 177
++ +V +D + +HL + A QI+ A+ + + K DL DS + L+ +
Sbjct: 112 EEVKVAPLVTLIDG-SRFKHLMKEIKDFAMRQIIDAEILGINKVDL-IDSLQIPILEVSV 169
Query: 178 QALNPSAEI 186
Q LNP+A++
Sbjct: 170 QQLNPTAKV 178
>pir||JC2313 probable nitrile hydratase activating protein - Rhodococcus sp
dbj|BAA06274.1| (D30033) ORF1188 [Rhodococcus sp.]
dbj|BAA36599.1| (AB016078) nitrile hydratase activator [Rhodococcus sp. N-771]
prf||2022176A nitrile hydratase downstream ORF 1188 [Rhodococcus sp.]
Length = 396
Score = 65.1 bits (157), Expect = 1e-09
Identities = 53/215 (24%), Positives = 110/215 (50%), Gaps = 41/215 (19%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALD----QRILSVQYCGE- 57
++P+T+++GFLG+GKT+ L+E L + + VA+I+N++ + +D +R +S+ E
Sbjct: 5 RLPVTVLSGFLGAGKTTLLNEILRNREGRRVAVIVNDMSEINIDSAEVEREISLSRSEEE 64
Query: 58 KMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDT 117
K++ + GC+C R DL+ + A + + ++IE++G++ P P+ +T
Sbjct: 65 KLVEMTNGCICSTLR-DLLSEISALARSGRFD-----YLLIESSGISEPLPV-----GET 113
Query: 118 FLGVHFEIQSVVA--------CVDALN-AREHLTNNEAK---------------EQIVFA 153
F + + ++ + VDA + R++ + +QI FA
Sbjct: 114 FTFIDTDGHALSSPDSTPWSPLVDANSFLRDYTAGGRVEADAPEDERDIADLLVDQIEFA 173
Query: 154 DSVLLTKTDLQNDSAALTKLKERIQALNPSAEIFD 188
D +L++K DL + + A ++ +++LN +FD
Sbjct: 174 DVILVSKADLIS-APAPGRIDGVLRSLNEPLRLFD 207
>ref|NP_456769.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_461156.1| (NC_003197) putative cobalamin synthesis protein [Salmonella
typhimurium LT2]
gb|AAL21115.1| (AE008799) putative cobalamin synthesis protein [Salmonella
typhimurium LT2]
emb|CAD02594.1| (AL627273) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 328
Score = 64.7 bits (156), Expect = 1e-09
Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 8 LITGFLGSGKTSFLSEYLNQTD-HQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGC 66
LITGFLGSGKT+ + L D + A+++NE G+ +D +L+ G + + GC
Sbjct: 6 LITGFLGSGKTTSILHLLAHKDPAEKWAVLVNEFGEVGIDGALLADS--GALLKEIPGGC 63
Query: 67 VCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHFEIQ 126
+CC L + L L + R++IE TGL +P IL +L+ +++
Sbjct: 64 MCCVNGLPMQVGLNTLLRQGK-----PDRLLIEPTGLGHPKQIL-DLLTAPVYEPWIDLR 117
Query: 127 SVVACVD--ALNAREHLTNNEAKEQIVFADSVLLTKTD---LQNDSA 168
+ + +D L ++ + N ++Q+ AD ++ KTD Q+D+A
Sbjct: 118 ATLCILDPRLLLDQQSVANENFRDQLASADIIIANKTDRATAQSDAA 164
>ref|NP_619244.1| (NC_003552) CobW protein [Methanosarcina acetivorans str. C2A]
[Methanosarcina acetivorans C2A]
gb|AAM07724.1| (AE011158) CobW protein [Methanosarcina acetivorans str. C2A]
[Methanosarcina acetivorans C2A]
Length = 451
Score = 64.3 bits (155), Expect = 2e-09
Identities = 51/189 (26%), Positives = 98/189 (50%), Gaps = 15/189 (7%)
Query: 3 KIPITLITGFLGSGKTSF---LSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKM 59
K+ + ++ GFLGSGKT+ + +YL + + VA+I+NEIG+ +D + + G
Sbjct: 63 KVDVIVVGGFLGSGKTTTIINMGKYLAEKGKK-VAIIVNEIGEVGIDGDV--INRFGFDT 119
Query: 60 LYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFL 119
+ +GC+CC ++ L ++ L E+ +I ++IE TG+A P ++ T + L
Sbjct: 120 KEITSGCICCTLKVGLRTTM--DLLTKEYKPDI---VMIEPTGIAFP-NVIRTEVELMNL 173
Query: 120 GVHFEIQSVVACVDALNAREHL--TNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERI 177
G ++ +V +D + + A QI+ A+ + + K DL + + ++ +
Sbjct: 174 GEEVKVAPLVTLIDGSRFKNLMKEVKEFAMRQIIDAEILGINKVDL-IEPIRIPIIEASV 232
Query: 178 QALNPSAEI 186
Q LNP A++
Sbjct: 233 QQLNPKAKV 241
>ref|NP_633096.1| (NC_003901) conserved protein [Methanosarcina mazei Goe1]
gb|AAM30768.1| (AE013334) conserved protein [Methanosarcina mazei Goe1]
Length = 385
Score = 63.9 bits (154), Expect = 2e-09
Identities = 54/187 (28%), Positives = 98/187 (51%), Gaps = 17/187 (9%)
Query: 6 ITLITGFLGSGKTSFLSEYLNQTDHQG--VALIINEIGQAALDQRILSVQYCGEKMLYLN 63
+ ++ GFLGSGKT+ + +G VA+I+NEIG+ +D + ++ G +
Sbjct: 3 VIVVGGFLGSGKTTTIINMGKYLADKGKKVAIIVNEIGEIGIDGDV--IKRFGFDTKEIT 60
Query: 64 AGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHF 123
+GC+CC ++ L ++ + Y+ +I I+IE TG+A P ++ T + LG
Sbjct: 61 SGCICCTLKVGLRATMSTLVKEYK--PDI---IMIEPTGIAFP-NVIKTEVELMNLGEEV 114
Query: 124 EIQSVVACVDALNAREHLTNNEAKE----QIVFADSVLLTKTDLQNDSAALTKLKERIQA 179
++ +V +D + +HL E KE QI+ A+ + + K DL + + L+ +Q
Sbjct: 115 KVAPLVTLIDG-SRFKHLM-KEVKEFAMRQIIDAEILGINKVDL-IEPIRIPILETSVQQ 171
Query: 180 LNPSAEI 186
LNP A++
Sbjct: 172 LNPEAKV 178
>ref|NP_615815.1| (NC_003552) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM04295.1| (AE010749) hypothetical protein (multi-domain) [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 367
Score = 63.5 bits (153), Expect = 3e-09
Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 14/183 (7%)
Query: 8 LITGFLGSGKTSFLSEYLNQTDHQG--VALIINEIGQAALDQRILSVQYCGEKMLYLNAG 65
+I GFLGSGKT+ + + + QG A+I+NEIG+ +D +S + G + + +G
Sbjct: 5 IIGGFLGSGKTTTIRKLVEYLGAQGQRTAIIVNEIGEVGIDGETISGE--GVETREITSG 62
Query: 66 CVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHFEI 125
C+CC R+ + +L+ + +Y H + II+E TG+A P I I S + F
Sbjct: 63 CICCTLRISMEYTLRNLMASY--HPD---TIIVEPTGIAFPRQIKSNIESMGLPEISF-- 115
Query: 126 QSVVACVD--ALNAREHLTNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNPS 183
+V VD +L+ N + Q A+ + + K DL L ++ LNP
Sbjct: 116 TPIVNLVDPSSLSPNVEDLQNFVRNQKEDAEILGINKVDLIGQEKLLETCL-LLRKLNPR 174
Query: 184 AEI 186
A I
Sbjct: 175 ARI 177
>gb|AAD05171.1| (AF110185) unknown [Burkholderia pseudomallei]
Length = 447
Score = 62.4 bits (150), Expect = 7e-09
Identities = 52/209 (24%), Positives = 96/209 (45%), Gaps = 31/209 (14%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL----SVQYCGEKM 59
+P+T+++GFLG+GKT+ L+ L VA+I+N++ A +D + + + +
Sbjct: 5 LPVTVLSGFLGAGKTTLLNHILANRAGMKVAVIVNDLAAANVDATFVRGATELSHVEAHL 64
Query: 60 LYLNAGCVCCNKRLDLVESLK--ATLNNYEWHGEILRRIIIETTGLANPAPILWTILSD- 116
+ ++ GC+CC R DL+ ++ A N ++ I RI + A + D
Sbjct: 65 VEMSNGCICCTLRDDLLVEIRRLAAENRFD---AIRGRIDGHSPSRCRYAETFTFVDDDG 121
Query: 117 TFLGVHFEIQSVVACVDALNAREHLTNNEAK--------------------EQIVFADSV 156
+ + + ++V +DA N ++A EQI F D +
Sbjct: 122 STIADVARLDTMVTVIDAFNFLHDYARDDALAEHGLAATDEDDRTLVELLIEQIEFCDVL 181
Query: 157 LLTKTDLQNDSAALTKLKERIQALNPSAE 185
++ K DL D+ AL +L+ + LNP A+
Sbjct: 182 VINKADLV-DADALARLQRILANLNPRAQ 209
>ref|NP_619251.1| (NC_003552) cobalamin biosynthesis protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM07731.1| (AE011159) cobalamin biosynthesis protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 367
Score = 62.4 bits (150), Expect = 7e-09
Identities = 61/185 (32%), Positives = 87/185 (46%), Gaps = 18/185 (9%)
Query: 8 LITGFLGSGKTSF---LSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGE-KMLYLN 63
+I GFLGSGKT+ L EYL Q A+I+NEIG+ +D I+S GE + +
Sbjct: 5 IIGGFLGSGKTTTIRKLVEYLGARG-QRTAIIVNEIGEIGIDGDIISG---GEVETREIT 60
Query: 64 AGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHF 123
+GC+CC R+ + ++L+ + Y IIIE TG+A P I I S
Sbjct: 61 SGCICCTLRISMEQTLRNLMLTYS-----PDTIIIEPTGIAFPRQIKSNIESMDL--PEI 113
Query: 124 EIQSVVACVD--ALNAREHLTNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALN 181
I +V VD L+ N + QI A+ + + K DL L ++ LN
Sbjct: 114 SITPIVNLVDPSRLSPNVEDLQNFVRNQIEDAEILGINKVDLIGQEKLLETCL-LLRKLN 172
Query: 182 PSAEI 186
P A I
Sbjct: 173 PRARI 177
>ref|NP_416678.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P33030|YEIR_ECOLI Hypothetical protein yeiR
pir||D64986 yeiR protein - Escherichia coli (strain K-12)
gb|AAC75234.1| (AE000307) orf, hypothetical protein [Escherichia coli K12]
Length = 328
Score = 62.0 bits (149), Expect = 9e-09
Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 11/158 (6%)
Query: 8 LITGFLGSGKTSFLSEYLNQTD-HQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGC 66
LITGFLGSGKT+ + L D ++ A+++NE G+ +D +L+ G + + GC
Sbjct: 6 LITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGIDGALLADS--GALLKEIPGGC 63
Query: 67 VCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHFEIQ 126
+CC L + L L + R++IE TGL +P IL +L+ +++
Sbjct: 64 MCCVNGLPMQVGLNTLLRQGK-----PDRLLIEPTGLGHPKQIL-DLLTAPVYEPWIDLR 117
Query: 127 SVVACVD--ALNAREHLTNNEAKEQIVFADSVLLTKTD 162
+ + +D L + +N ++Q+ AD ++ K+D
Sbjct: 118 ATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSD 155
>ref|NP_288756.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_311092.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG57311.1|AE005450_1 (AE005450) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB36488.1| (AP002560) hypothetical protein [Escherichia coli O157:H7]
Length = 328
Score = 62.0 bits (149), Expect = 9e-09
Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 11/158 (6%)
Query: 8 LITGFLGSGKTSFLSEYLNQTD-HQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGC 66
LITGFLGSGKT+ + L D ++ A+++NE G+ +D +L+ G + + GC
Sbjct: 6 LITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGIDGALLADS--GALLKEIPGGC 63
Query: 67 VCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHFEIQ 126
+CC L + L L + R++IE TGL +P IL +L+ +++
Sbjct: 64 MCCVNGLPMQVGLNTLLRQGK-----PDRLLIEPTGLGHPKQIL-DLLTAPVYEPWIDLR 117
Query: 127 SVVACVD--ALNAREHLTNNEAKEQIVFADSVLLTKTD 162
+ + +D L + +N ++Q+ AD ++ K+D
Sbjct: 118 ATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSD 155
>dbj|BAA15982.1| (D90849) ORF_ID:o369#5; similar to [SwissProt Accession Number
P33030] [Escherichia coli]
Length = 303
Score = 62.0 bits (149), Expect = 9e-09
Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 11/158 (6%)
Query: 8 LITGFLGSGKTSFLSEYLNQTD-HQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGC 66
LITGFLGSGKT+ + L D ++ A+++NE G+ +D +L+ G + + GC
Sbjct: 6 LITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGIDGALLADS--GALLKEIPGGC 63
Query: 67 VCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHFEIQ 126
+CC L + L L + R++IE TGL +P IL +L+ +++
Sbjct: 64 MCCVNGLPMQVGLNTLLRQGK-----PDRLLIEPTGLGHPKQIL-DLLTAPVYEPWIDLR 117
Query: 127 SVVACVD--ALNAREHLTNNEAKEQIVFADSVLLTKTD 162
+ + +D L + +N ++Q+ AD ++ K+D
Sbjct: 118 ATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSD 155
>ref|NP_274284.1| (NC_003112) CobW-related protein [Neisseria meningitidis MC58]
pir||A81104 CobW-related protein NMB1263 [imported] - Neisseria meningitidis
(group B strain MD58)
gb|AAF41640.1| (AE002474) CobW-related protein [Neisseria meningitidis MC58]
Length = 305
Score = 61.2 bits (147), Expect = 1e-08
Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTD-HQGVALIINEIGQAALDQRILSVQYCGEKM 59
M K + LI+GFLG+GKT+ L + Q D ++ +I+NE G+ +D +LS G +
Sbjct: 1 MKKTKVHLISGFLGTGKTTALKSLMAQKDPNEKWVIIVNEFGEIGIDGAVLSDN--GIPV 58
Query: 60 LYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFL 119
+ GC+CC + +++ L + + R++IE +GLA+ A ++ L L
Sbjct: 59 AEIAGGCLCCTAGPQMGVTVQKMLRDAK-----PDRLMIEASGLAHAASVI-DELKTKPL 112
Query: 120 GVHFEIQSVVACVDALNAREHLTNNEA-----KEQIVFADSVLLTKTDL 163
EI +V VD R+ + + A K+QI D ++ +KTDL
Sbjct: 113 DSLLEIGAVFTVVD---PRQFINPDYAQQALYKDQIGICDVLVASKTDL 158
>gb|AAG44700.1|AF265442_1 (AF265442) DC36 [Homo sapiens]
Length = 105
Score = 61.2 bits (147), Expect = 1e-08
Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCG---EKM 59
KIP+T+ITG+LG+GKT+ L+ L + + VA+I+NE G+ + ++ L+V G E+
Sbjct: 33 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGELYEEW 92
Query: 60 LYLNAGCVCCN 70
L L GC+CC+
Sbjct: 93 LELRNGCLCCS 103
>ref|NP_647319.1| (NC_003923) ORFID:MW2502~hypothetical protein, similar to cobalamin
synthesis related protein CobW [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB96367.1| (AP004830) ORFID:MW2502~hypothetical protein, similar to cobalamin
synthesis related protein CobW [Staphylococcus aureus
subsp. aureus MW2]
Length = 296
Score = 60.8 bits (146), Expect = 2e-08
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 27/193 (13%)
Query: 6 ITLITGFLGSGKTSFLSEYLNQTDHQGV--ALIINEIGQAALDQRILSVQYCGEKMLYLN 63
I +I GFLG GKT+ L+ L ++ + + A+I+NE G+ ++D ++S + L
Sbjct: 3 IVIIGGFLGGGKTTVLNHLLAESLKESLKPAVIMNEFGKMSVDGALVSEDI---PLSELT 59
Query: 64 AGCVCCNKRLDLVESLKATLNNYEWHGEILRR----IIIETTGLANPAPILWTILSDTFL 119
GC+CC + D+ E L H L+ + IE +G+A P +L L+ L
Sbjct: 60 EGCICCAMKADVSEQL---------HQLYLKEQPDIVFIECSGIAEPVSVLDACLT-PIL 109
Query: 120 GVHFEIQSVVACVDALNAREHLTNNEAK------EQIVFADSVLLTKTDLQNDSAALTKL 173
I ++ +DA + +H+ + EQ+ + + + K D D +KL
Sbjct: 110 APFTTITHMIGVIDA-SMYKHIKSFPKDIQGLFYEQLAYCSVLFVNKID-SADVETTSKL 167
Query: 174 KERIQALNPSAEI 186
+ ++ +NP A+I
Sbjct: 168 LKDLEVINPEADI 180
>ref|NP_373106.1| (NC_002758) hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
ref|NP_375694.1| (NC_002745) hypothetical protein, similar to cobalamin synthesis
related protein CobW [Staphylococcus aureus subsp.
aureus N315]
dbj|BAB43673.1| (AP003137) ORFID:SA2368~hypothetical protein, similar to cobalamin
synthesis related protein CobW [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB58744.1| (AP003365) hypothetical protein [Staphylococcus aureus subsp.
aureus Mu50]
Length = 296
Score = 60.8 bits (146), Expect = 2e-08
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 27/193 (13%)
Query: 6 ITLITGFLGSGKTSFLSEYLNQTDHQGV--ALIINEIGQAALDQRILSVQYCGEKMLYLN 63
I +I GFLG GKT+ L+ L ++ + + A+I+NE G+ ++D ++S + L
Sbjct: 3 IVIIGGFLGGGKTTVLNHLLAESLKESLKPAVIMNEFGKMSVDGALVSEDI---PLSELT 59
Query: 64 AGCVCCNKRLDLVESLKATLNNYEWHGEILRR----IIIETTGLANPAPILWTILSDTFL 119
GC+CC + D+ E L H L+ + IE +G+A P +L L+ L
Sbjct: 60 EGCICCAMKADVSEQL---------HQLYLKEQPDIVFIECSGIAEPVSVLDACLT-PIL 109
Query: 120 GVHFEIQSVVACVDALNAREHLTNNEAK------EQIVFADSVLLTKTDLQNDSAALTKL 173
I ++ +DA + +H+ + EQ+ + + + K D D +KL
Sbjct: 110 APFTTITHMIGVIDA-SMYKHIKSFPKDIQGLFYEQLAYCSVLFVNKID-SADVETTSKL 167
Query: 174 KERIQALNPSAEI 186
+ ++ +NP A+I
Sbjct: 168 LKDLEVINPEADI 180
>gb|AAG31652.1| (AF315736) PRLI-interacting factor L [Arabidopsis thaliana]
Length = 245
Score = 60.1 bits (144), Expect = 3e-08
Identities = 62/232 (26%), Positives = 99/232 (41%), Gaps = 55/232 (23%)
Query: 124 EIQSVVACVDALNAREHLTN-------NEAKEQIVFADSVLLTKTDLQNDSAALTKLKER 176
++ VV VDA +AR HL NEA EQI +AD +++ KTDL + L + +R
Sbjct: 7 KLDGVVTLVDAKHARLHLDEVKPEGYVNEAVEQIAYADRIIVNKTDLVGE-PELASVMQR 65
Query: 177 IQALNPSAEI----FDKRAIDY---------ESLFSRKNRARNFMPRMPKDSHSQGFE-- 221
I+ +N A + + K +DY E + S N R D H G +
Sbjct: 66 IKTINSMAHMKRTKYGKVDLDYVLGIGGFDLERIESSVNEEEK-EDREGHDDHHHGHDCH 124
Query: 222 ---------------------------TLSINFEGTMEWSAFGIWLSLLLHQYGTQILRI 254
++SI EG ++ +WL LL+Q I R+
Sbjct: 125 DHHNEHEHEHEHEHHHSHDHTHDPGVGSVSIVCEGDLDLEKANMWLGALLYQRNEDIYRM 184
Query: 255 KGIIDIGSGFLVSINGVMHVIY---PPKHILKDQNGSN-LVFIMRHLEREKI 302
KGI+ + + +H I+ P + KD+ +N +VFI ++L RE++
Sbjct: 185 KGILSVQDMDERFVFQGVHEIFEGSPDRLWRKDETRTNKIVFIGKNLNREEL 236
>ref|NP_284193.1| (NC_003116) hypothetical protein NMA1470 [Neisseria meningitidis
Z2491]
pir||A81838 hypothetical protein NMA1470 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84704.1| (AL162756) hypothetical protein NMA1470 [Neisseria meningitidis
Z2491]
Length = 308
Score = 59.7 bits (143), Expect = 4e-08
Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 17/167 (10%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTD-HQGVALIINEIGQAALDQRILSVQYCGEKMLY 61
K + LI+GFLG+GKT+ L + Q D ++ +I+NE G+ +D +LS G +
Sbjct: 6 KTKVHLISGFLGTGKTTALKSLMAQKDPNEKWVIIVNEFGEIGIDGAVLSDN--GIPVAE 63
Query: 62 LNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGV 121
+ GC+CC + +++ L + + R++IE +GLA+ A ++ + + L
Sbjct: 64 IAGGCLCCTAGPQMGVTVQKMLRDAK-----PDRLMIEASGLAHAASVIDELKAKP-LDS 117
Query: 122 HFEIQSVVACVDALNAREHLTNNEA-----KEQIVFADSVLLTKTDL 163
EI +V V N R+ + + A K+QI D ++ +KTDL
Sbjct: 118 LLEIGAVFTVV---NPRQFINPDYAQQALYKDQIGICDVLVASKTDL 161
>ref|NP_254219.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||F82955 hypothetical protein PA5532 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG08917.1|AE004965_9 (AE004965) hypothetical protein [Pseudomonas aeruginosa]
Length = 252
Score = 59.7 bits (143), Expect = 4e-08
Identities = 51/184 (27%), Positives = 83/184 (44%), Gaps = 17/184 (9%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDH-QGVALIINEIGQAALDQRILSVQYCGEKMLY 61
+IP LI G LG+GKTS + L Q + A+++NE G+ LD +L+ G +
Sbjct: 4 EIPTHLIGGPLGAGKTSLIRSLLAQKPAGERWAVLVNEFGEIGLDAALLATDVDGVAIGE 63
Query: 62 LNAGCVCCNKRLDLVESLKATLNNYEWHGEILR-----RIIIETTGLANPAPILWTILSD 116
+ GC+CC + L G +LR R+ IE +GL +P + + +
Sbjct: 64 VAGGCLCCVNGVPFQVGL----------GRLLRRARPDRLFIEPSGLGHPQALWKQLQAP 113
Query: 117 TFLGVHFEIQSVVACVDALNAREHLTNNEAKEQIVFADSVLLTKTDLQNDSAALTKLKER 176
+ GV +Q +V +DA EA+EQ + A +LL D+ ++ R
Sbjct: 114 PWSGV-LALQPLVVVLDAAALASGQPLPEAQEQALEAAGMLLLNKSETLDATQRCAVRAR 172
Query: 177 IQAL 180
+ L
Sbjct: 173 LPVL 176
>ref|NP_603676.1| (NC_003454) Putative GTPases (G3E family) [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gb|AAL94975.1| (AE010587) Putative GTPases (G3E family) [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 294
Score = 59.3 bits (142), Expect = 6e-08
Identities = 77/308 (25%), Positives = 132/308 (42%), Gaps = 35/308 (11%)
Query: 6 ITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAG 65
I L++GFLG+GKT+F+ E + + V L NE +D+ L + + ++ G
Sbjct: 3 ILLVSGFLGAGKTTFIKELAKNINLEFVVL-ENEYADIGIDRDFLDEK--NLNVWEMSEG 59
Query: 66 CVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGVHFEI 125
C+CC+ + D S+K + E + E L IIE TG+ + I+ I EI
Sbjct: 60 CICCSMKGDFKSSIKRIYS--EINPEYL---IIEPTGVGMLSSIIENIRE--INNNDIEI 112
Query: 126 QSVVACVDALNAREHLT--NNEAKEQIVFADSVLLTKTDLQNDSAALTKLKERIQALNPS 183
S + +D + E+L N+ + + V+LTK + N S + +K I N +
Sbjct: 113 LSPLTLIDITSFNEYLKTFNDFFYDNLKNTGKVILTKLESFN-SFDVESIKSEILKTNSN 171
Query: 184 AEIFDKRAIDYESLFSRKNRARNFMPRMPKDSHSQGFETLSINFEGTMEWSAFGIWLSLL 243
EI DY PK+ E L+ N + + +F + +
Sbjct: 172 LEII---TTDYR--------------YFPKEWFG---EILNKNIDNKIIDKSFSLKTHIN 211
Query: 244 LHQYGTQILRIKGIIDIGSGFLVSINGVMHVIYPPKHILK-DQNGSNLVFIMRHLEREKI 302
L + + + +K + ++G +NG IY K I+K D + ++ E E I
Sbjct: 212 LRTFSKENVNLKTMDELGLLLNRLVNGDFGKIYRAKGIVKIDGYWGKFNLVYKNFEMEPI 271
Query: 303 LNSLKGFK 310
++ KG K
Sbjct: 272 TDA-KGTK 278
>ref|NP_615400.1| (NC_003552) CobW protein [Methanosarcina acetivorans str. C2A]
[Methanosarcina acetivorans C2A]
gb|AAM03880.1| (AE010703) CobW protein [Methanosarcina acetivorans str. C2A]
[Methanosarcina acetivorans C2A]
Length = 354
Score = 58.5 bits (140), Expect = 1e-07
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 26/191 (13%)
Query: 6 ITLITGFLGSGKTSFLSEYLNQTDHQG--VALIINEIGQAALDQRILSVQYCGEKMLYLN 63
+ +I GFLGSGKT+ + + Q G +A+I+NEIG+ LD L K L
Sbjct: 3 VMIIGGFLGSGKTTAIQKISRQLSDAGKRIAIIVNEIGEIGLDGDTLKSP--DIKTEELT 60
Query: 64 AGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGV-H 122
+GC+CC ++ + +L+ TL E+ EI +IIE TG+A P I I +G+
Sbjct: 61 SGCICCTLKISMQYTLQ-TLEE-EFRPEI---VIIEPTGIAFPGQIREEI---EIMGLSE 112
Query: 123 FEIQSVVACVDALNAREHLTNNEAKE-------QIVFADSVLLTKTDLQNDSAALTKLKE 175
+V VD EAKE Q+ A+ + + K D+ + + ++
Sbjct: 113 LSFAPIVTIVD-----PGRFGTEAKEIPRFIETQVKEAEILGINKVDIA-PAEIVMATEQ 166
Query: 176 RIQALNPSAEI 186
+ LNP A+I
Sbjct: 167 MLTELNPEAKI 177
>ref|NP_633645.1| (NC_003901) divalent cation transport protein [Methanosarcina mazei
Goe1]
gb|AAM31317.1| (AE013396) divalent cation transport protein [Methanosarcina mazei
Goe1]
Length = 373
Score = 57.4 bits (137), Expect = 2e-07
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 28/192 (14%)
Query: 6 ITLITGFLGSGKTSFLSEYLNQTDHQG--VALIINEIGQAALDQRILSVQYCGEKMLYLN 63
+ +I GFLGSGKT+ + Q G A+I+NEIG+ LD L+ G L
Sbjct: 21 VMIIGGFLGSGKTTAIQRISRQLSDAGKRTAIIVNEIGEIGLDGDTLNSP--GITTRELT 78
Query: 64 AGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLGV-H 122
+GC+CC ++ + +L+ TL E+ +I +IIE TG+A P I I +G+
Sbjct: 79 SGCICCTLKISMQYTLQ-TLEE-EFRPDI---VIIEPTGIAFPGQIREEI---EVMGLSE 130
Query: 123 FEIQSVVACVDALNAREHLTNNEAKE-------QIVFADSVLLTKTDLQNDSAALTKLKE 175
VV VD EAKE Q+ A+ + + K D+ A + + E
Sbjct: 131 LSFSPVVTLVD-----PGRFGTEAKEIPKFIETQVKEAEILGINKMDIA--PAEIVRATE 183
Query: 176 RIQA-LNPSAEI 186
++ A LNP A +
Sbjct: 184 KMLAELNPEARV 195
>gb|AAA60521.2| (U00007) yeiR [Escherichia coli]
Length = 105
Score = 55.5 bits (132), Expect = 8e-07
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 8 LITGFLGSGKTSFLSEYLNQTD-HQGVALIINEIGQAALDQRILSVQYCGEKMLYLNAGC 66
LITGFLGSGKT+ + L D ++ A+++NE G+ +D +L+ G + + GC
Sbjct: 6 LITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGIDGALLADS--GALLKEIPGGC 63
Query: 67 VCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPIL 110
+CC L + L L + R++IE TGL +P IL
Sbjct: 64 MCCVNGLPMQVGLNTLLRQGK-----PDRLLIEPTGLGHPKQIL 102
>sp|P22042|YTR2_SPIAU Hypothetical protein in TRPE 3'region (ORF 2)
gb|AAA26589.1| (M55917) unknown [Spirochaeta aurantia]
Length = 60
Score = 47.8 bits (112), Expect = 2e-04
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 5 PITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRIL 50
P+T++TGFLGSGKT+ ++ L + L++NE G+AAL+ +++
Sbjct: 9 PVTVLTGFLGSGKTTLVNRLLKERPGTRFGLVVNEFGEAALESQLV 54
>gb|AAM75310.1|AF454824_107 (AF454824) EF0107 [Enterococcus faecalis]
Length = 54
Score = 45.8 bits (107), Expect = 6e-04
Identities = 17/48 (35%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 4 IPITLITGFLGSGKTSFLSEYLNQTDH--QGVALIINEIGQAALDQRI 49
IP+T+++GFLG+GKT+ +++ L + H + + +I+NE G+ +D ++
Sbjct: 3 IPVTIVSGFLGAGKTTLINQALQVSPHPREEIIIIVNEFGEVGIDHKL 50
>emb|CAA88687.1| (Z48769) 5' end of ORF P47K [Rhodococcus sp.]
Length = 56
Score = 45.4 bits (106), Expect = 8e-04
Identities = 17/44 (38%), Positives = 34/44 (76%)
Query: 3 KIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALD 46
++P+T+++GFLG+GKT+ L+E L + + VA+I+N++ + +D
Sbjct: 5 RLPVTVLSGFLGAGKTTLLNEILRNREGRRVAVIVNDMSEINID 48
>gb|AAC17121.1| (AF065414) COBW-like placental protein [Homo sapiens]
Length = 106
Score = 43.5 bits (101), Expect = 0.003
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 57 EKMLYLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSD 116
E+ L L GC+CC+ + + L+A N + G+ I++ETTGLA+P + D
Sbjct: 18 EEWLELRNGCLCCSVKDN---GLRAIENLMQKKGKF-DDILLETTGLADPGAVTSMFWVD 73
Query: 117 TFLGVHFEIQSVVACVDALNAREHLTNNE 145
LG + ++ VD+ +HLT +
Sbjct: 74 AELGSDIYLDGIITIVDSKYGLKHLTEEK 102
>ref|NP_560954.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB79744.1| (AP003185) conserved hypothetical protein [Clostridium perfringens]
Length = 194
Score = 43.1 bits (100), Expect = 0.004
Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 20/210 (9%)
Query: 1 MPKIPITLITGFLGSGKTSFLSEYLNQTDHQGVALIINEIGQAALDQRILSVQYCGEKML 60
M K + LITGFL SGKTSF++ L+ + V +I E GQ L C + +
Sbjct: 1 MKKCSVDLITGFLSSGKTSFINHILDDFSKEEVLVIQCECGQEELIN-------CRKNVN 53
Query: 61 YLNAGCVCCNKRLDLVESLKATLNNYEWHGEILRRIIIETTGLANPAPILWTILSDTFLG 120
+ K DL+ SLK +R+ IE G++ + + +++ L
Sbjct: 54 IKKFYSMDELKEEDLIRSLKFYAP---------KRVFIECNGVSETKKFIDKV-TNSKLK 103
Query: 121 VHFEIQSVVACVDALNAREHLTNNEAK--EQIVFADSVLLTKTDLQNDSAALTKLKERIQ 178
+ ++ +V +D L N + I ++ ++L K + + AL + K+ I+
Sbjct: 104 EYLKLGIIVNLIDMTTFNMFLKNIPSMIIPNISLSNLIVLNKCN-EISGNALKEYKDMIE 162
Query: 179 ALNPSAEIFDKRAIDYESLFSRKNRARNFM 208
N +A I + + ++ K R N M
Sbjct: 163 KFNHNAHIVNCIGKEGTNMNFNKERIINRM 192
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.139 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,447,259
Number of Sequences: 1026957
Number of extensions: 8071739
Number of successful extensions: 22959
Number of sequences better than 1.0e-02: 113
Number of HSP's better than 0.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 22619
Number of HSP's gapped (non-prelim): 131
length of query: 321
length of database: 324,149,939
effective HSP length: 121
effective length of query: 200
effective length of database: 199,888,142
effective search space: 39977628400
effective search space used: 39977628400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 97 (42.0 bits)