BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644664|ref|NP_206833.1| hypothetical protein
[Helicobacter pylori 26695]
         (137 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_222749.1|  (NC_000921) putative [Helicobacter pylori ...   265  5e-71
emb|CAA04212.1|  (AJ000662) hypothetical protein [Wolinella ...   105  7e-23
ref|NP_344098.1|  (NC_002754) Conserved hypothetical protein...    56  6e-08
gb|EAA01981.1|  (AAAB01001711) ebiP159 [Anopheles gambiae st...    51  2e-06

>ref|NP_222749.1| (NC_000921) putative [Helicobacter pylori J99]
 ref|NP_206833.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 sp|O24874|Y031_HELPY Hypothetical protein HP0031/JHP0027
 pir||G64523 hypothetical protein HP0031 - Helicobacter pylori
 gb|AAD07108.1| (AE000525) H. pylori predicted coding region HP0031 [Helicobacter
           pylori 26695]
 gb|AAD05611.1| (AE001442) putative [Helicobacter pylori J99]
          Length = 137

 Score =  265 bits (678), Expect = 5e-71
 Identities = 137/137 (100%), Positives = 137/137 (100%)

Query: 1   MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEE 60
           MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEE
Sbjct: 1   MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEE 60

Query: 61  EKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFIS 120
           EKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFIS
Sbjct: 61  EKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFIS 120

Query: 121 HQNSLVEQSSIPVVIAK 137
           HQNSLVEQSSIPVVIAK
Sbjct: 121 HQNSLVEQSSIPVVIAK 137



>emb|CAA04212.1| (AJ000662) hypothetical protein [Wolinella succinogenes]
          Length = 138

 Score =  105 bits (263), Expect = 7e-23
 Identities = 51/135 (37%), Positives = 86/135 (62%)

Query: 3   ILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEEEK 62
           +LF I DT+ C  A ++ + +     +   TL+HV  E  +Y E+ +  Y + E  EEEK
Sbjct: 4   LLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEK 63

Query: 63  AKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFISHQ 122
           AK L ++F   F ++ I    V+K G+ +++VL+ AKDY+LL+IG+SE++ L ++F SHQ
Sbjct: 64  AKLLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAKDYNLLIIGSSENSFLNKIFASHQ 123

Query: 123 NSLVEQSSIPVVIAK 137
           +  ++++ IPV+I K
Sbjct: 124 DDFIQKAPIPVLIVK 138



>ref|NP_344098.1| (NC_002754) Conserved hypothetical protein [Sulfolobus
           solfataricus]
 gb|AAK42888.1| (AE006871) Conserved hypothetical protein [Sulfolobus solfataricus]
          Length = 139

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 38/138 (27%), Positives = 73/138 (52%), Gaps = 5/138 (3%)

Query: 3   ILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEEEK 62
           IL G   ++    A+ FA++LA       F +  + + +F Y+   +     T++LEE +
Sbjct: 4   ILVGYDGSENAERALDFAIELASKFSARLFVVEVIDLTLF-YNTGILPPLEATKSLEE-R 61

Query: 63  AKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKD--YDLLLIGASESNLLYRLFI- 119
           AK  +K+  +  K + +  E +   GD  + +L  A D   D+++IG+   + + R+F+ 
Sbjct: 62  AKKDVKRAIEKAKSKGVNAEGITVEGDPANSILQFATDNQIDVIVIGSRGLSKVQRIFLG 121

Query: 120 SHQNSLVEQSSIPVVIAK 137
           S  N +V++S +PVV+ K
Sbjct: 122 SVSNKIVQESKVPVVVVK 139



>gb|EAA01981.1| (AAAB01001711) ebiP159 [Anopheles gambiae str. PEST]
          Length = 142

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 34/125 (27%), Positives = 71/125 (56%), Gaps = 10/125 (8%)

Query: 16  AIKFAVKLAHSLKEVRFTLLHVS-MEV-FIYSESGMMDYGQTEALEEEKAKALLKQFEDA 73
           A+KFA ++       + +L+HV+ +++ F   + G   + + E  E ++    L + E  
Sbjct: 22  AVKFAKEV-----NAKISLIHVAPLDIGFAIGDMGFQYFPEIEKSEIKEELLQLNRLEQR 76

Query: 74  FKKENIECESVLKSGDLIDVVLDMA--KDYDLLLIGASESNLLYRLFI-SHQNSLVEQSS 130
              ++I+C+ +LK G+   ++L+ A  K+ D ++IG+   + +Y +FI S   S+ ++SS
Sbjct: 77  IIAQDIDCDHLLKQGEASSIILEFAEEKNADYIVIGSHGRSGMYDVFIGSLTKSITKKSS 136

Query: 131 IPVVI 135
           IPV++
Sbjct: 137 IPVLV 141



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.135    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,217,769
Number of Sequences: 1026957
Number of extensions: 2536115
Number of successful extensions: 8302
Number of sequences better than 1.0e-02: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8300
Number of HSP's gapped (non-prelim): 4
length of query: 137
length of database: 324,149,939
effective HSP length: 113
effective length of query: 24
effective length of database: 208,103,798
effective search space: 4994491152
effective search space used: 4994491152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 89 (38.9 bits)