BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644944|ref|NP_207114.1| hypothetical protein
[Helicobacter pylori 26695]
(130 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207114.1| (NC_000915) hypothetical protein [Helicoba... 264 1e-70
ref|NP_207688.1| (NC_000915) hypothetical protein [Helicoba... 199 3e-51
ref|NP_223548.1| (NC_000921) putative [Helicobacter pylori ... 102 1e-21
gb|AAM22666.1|AF469113_6 (AF469113) unknown [Helicobacter p... 51 2e-06
gb|AAM22652.1|AF469112_7 (AF469112) unknown [Helicobacter p... 50 3e-06
ref|NP_223550.1| (NC_000921) putative [Helicobacter pylori ... 45 1e-04
ref|NP_207686.1| (NC_000915) hypothetical protein [Helicoba... 44 3e-04
gb|AAM69078.1|U64862_3 (U64862) Hypothetical protein ZC8.4a... 39 0.008
ref|NP_508847.1| (NM_076446) ZC8.4b.p [Caenorhabditis elega... 39 0.008
ref|NP_508848.1| (NM_076447) probable myofibrillar protein ... 39 0.008
>ref|NP_207114.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64559 hypothetical protein HP0316 - Helicobacter pylori (strain 26695)
gb|AAD07385.1| (AE000549) H. pylori predicted coding region HP0316 [Helicobacter
pylori 26695]
Length = 130
Score = 264 bits (674), Expect = 1e-70
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MPNTTAKKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
MPNTTAKKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA
Sbjct: 1 MPNTTAKKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
Query: 61 LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDALNGINLTQIDSLDDFTNELKRENS 120
LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDALNGINLTQIDSLDDFTNELKRENS
Sbjct: 61 LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDALNGINLTQIDSLDDFTNELKRENS 120
Query: 121 KGFENVCFSV 130
KGFENVCFSV
Sbjct: 121 KGFENVCFSV 130
>ref|NP_207688.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64631 hypothetical protein HP0895 - Helicobacter pylori (strain 26695)
gb|AAD07949.1| (AE000599) H. pylori predicted coding region HP0895 [Helicobacter
pylori 26695]
Length = 125
Score = 199 bits (507), Expect = 3e-51
Identities = 99/117 (84%), Positives = 104/117 (88%)
Query: 1 MPNTTAKKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
MPNTTAKKDYTKYS+KQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA
Sbjct: 1 MPNTTAKKDYTKYSKKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
Query: 61 LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDALNGINLTQIDSLDDFTNELKR 117
LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRD N ++ ++NE KR
Sbjct: 61 LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDVGNKETDLIVEDFSSYSNERKR 117
>ref|NP_223548.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71883 hypothetical protein jhp0830 - Helicobacter pylori (strain J99)
gb|AAD06407.1| (AE001512) putative [Helicobacter pylori J99]
Length = 83
Score = 102 bits (253), Expect = 1e-21
Identities = 59/118 (50%), Positives = 67/118 (56%), Gaps = 40/118 (33%)
Query: 1 MPNTTAKKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
MPNTT KDYTKYS+KQLFNLI+QLE
Sbjct: 1 MPNTT-NKDYTKYSQKQLFNLINQLE---------------------------------- 25
Query: 61 LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDALNGINLTQIDSLDDFTNELKRE 118
QKISQAFDDKR CCLGHEIPN+ETQQA+R ALNG NL I+ + NE+K+E
Sbjct: 26 -----QKISQAFDDKRGCCLGHEIPNLETQQAIRGALNGENLEVIEDFSAWANEIKKE 78
>gb|AAM22666.1|AF469113_6 (AF469113) unknown [Helicobacter pylori]
Length = 92
Score = 51.2 bits (121), Expect = 2e-06
Identities = 32/97 (32%), Positives = 54/97 (54%), Gaps = 8/97 (8%)
Query: 29 IKKMQNDRISFKE--KMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEIPN 86
+K ++ +KE K+ K+L + + + E+ ++ SQA D++ + N
Sbjct: 2 LKNVEMGANFYKELGKLEKQLARYQSKVLEIKTQMKEIKKQYSQAKKDEK------KTKN 55
Query: 87 IETQQAMRDALNGINLTQIDSLDDFTNELKRENSKGF 123
+ET QA++D + N T+IDSLD+ TNELKRE G+
Sbjct: 56 LETLQAIKDIESRANFTKIDSLDELTNELKREIHAGY 92
>gb|AAM22652.1|AF469112_7 (AF469112) unknown [Helicobacter pylori]
Length = 92
Score = 50.4 bits (119), Expect = 3e-06
Identities = 29/82 (35%), Positives = 47/82 (56%), Gaps = 6/82 (7%)
Query: 42 KMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDALNGIN 101
K+ K+L K + + E+ ++ SQA +++ + N+ET QA++D + N
Sbjct: 17 KLEKQLAKYQSKVLEIKTQMKEIKKQYSQAKKEEK------KTKNLETLQAIKDVESRAN 70
Query: 102 LTQIDSLDDFTNELKRENSKGF 123
T+IDSLD+ TNELKRE G+
Sbjct: 71 FTKIDSLDELTNELKREIYAGY 92
>ref|NP_223550.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71883 hypothetical protein jhp0832 - Helicobacter pylori (strain J99)
gb|AAD06412.1| (AE001512) putative [Helicobacter pylori J99]
Length = 95
Score = 45.4 bits (106), Expect = 1e-04
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 1 MPNTTAKKDYTKYSEKQLFNLIHQLE-------RKIKKMQNDRISFKEKMAKELEKRDQN 53
MPNTT KDYTKYS+KQLFN ++ ++ K+K++Q K+++ K L+ + +
Sbjct: 1 MPNTT-NKDYTKYSQKQLFNFLNSIKAKQKRALEKLKEIQTQ----KQRIKKALQFKALH 55
Query: 54 FKDKIDALNELLQKISQAFDDKRDCC 79
+ + E + +++A D K C
Sbjct: 56 LTENGYTIEEEREILARAKDTKNRLC 81
>ref|NP_207686.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||E64631 hypothetical protein HP0893 - Helicobacter pylori (strain 26695)
gb|AAD07948.1| (AE000599) H. pylori predicted coding region HP0893 [Helicobacter
pylori 26695]
Length = 95
Score = 43.9 bits (102), Expect = 3e-04
Identities = 26/82 (31%), Positives = 47/82 (56%), Gaps = 4/82 (4%)
Query: 1 MPNTTAKKDYTKYSEKQLFNLIHQLERKIKK---MQNDRISFKEKMAKELEKRDQNFKDK 57
MPNTT KDYTKYS++QLF+ ++ ++ K K+ + + K+++ K L+ + N +
Sbjct: 1 MPNTT-NKDYTKYSQRQLFSFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALNLTEN 59
Query: 58 IDALNELLQKISQAFDDKRDCC 79
+ E + +++A D K C
Sbjct: 60 GYTIEEEREILARAKDTKNRLC 81
>gb|AAM69078.1|U64862_3 (U64862) Hypothetical protein ZC8.4a [Caenorhabditis elegans]
Length = 2396
Score = 39.3 bits (90), Expect = 0.008
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 7 KKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQ 66
+KD + ++L + + Q+ R K +ND K K A E++K K I AL++ +
Sbjct: 1169 EKDDLERRIRELEDELSQIGRGNDKTENDITELKRKHAAEIDK----LKSDISALHD--K 1222
Query: 67 KISQAFDDKRDCCLGHEIPNIET-QQAMRDALNGINLTQIDSLDDFTNELKRE 118
+S D+K G + N+++ + +RD LN + DSL+ NEL+RE
Sbjct: 1223 HLSDLDDEKEQ--YGKAVENLKSVEDDLRDKLNNLEKQLADSLNR-ENELERE 1272
>ref|NP_508847.1| (NM_076446) ZC8.4b.p [Caenorhabditis elegans]
gb|AAK67253.1|U64862_4 (U64862) Hypothetical protein ZC8.4b [Caenorhabditis elegans]
Length = 2315
Score = 39.3 bits (90), Expect = 0.008
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 7 KKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQ 66
+KD + ++L + + Q+ R K +ND K K A E++K K I AL++ +
Sbjct: 1061 EKDDLERRIRELEDELSQIGRGNDKTENDITELKRKHAAEIDK----LKSDISALHD--K 1114
Query: 67 KISQAFDDKRDCCLGHEIPNIET-QQAMRDALNGINLTQIDSLDDFTNELKRE 118
+S D+K G + N+++ + +RD LN + DSL+ NEL+RE
Sbjct: 1115 HLSDLDDEKEQ--YGKAVENLKSVEDDLRDKLNNLEKQLADSLNR-ENELERE 1164
>ref|NP_508848.1| (NM_076447) probable myofibrillar protein [Caenorhabditis elegans]
pir||T29999 hypothetical protein ZC8.4 - Caenorhabditis elegans
Length = 2288
Score = 39.3 bits (90), Expect = 0.008
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 7 KKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQ 66
+KD + ++L + + Q+ R K +ND K K A E++K K I AL++ +
Sbjct: 1061 EKDDLERRIRELEDELSQIGRGNDKTENDITELKRKHAAEIDK----LKSDISALHD--K 1114
Query: 67 KISQAFDDKRDCCLGHEIPNIET-QQAMRDALNGINLTQIDSLDDFTNELKRE 118
+S D+K G + N+++ + +RD LN + DSL+ NEL+RE
Sbjct: 1115 HLSDLDDEKEQ--YGKAVENLKSVEDDLRDKLNNLEKQLADSLNR-ENELERE 1164
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.315 0.132 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,431,972
Number of Sequences: 1026957
Number of extensions: 2728092
Number of successful extensions: 19127
Number of sequences better than 1.0e-02: 10
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 19115
Number of HSP's gapped (non-prelim): 23
length of query: 130
length of database: 324,149,939
effective HSP length: 106
effective length of query: 24
effective length of database: 215,292,497
effective search space: 5167019928
effective search space used: 5167019928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 90 (39.3 bits)