BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644946|ref|NP_207116.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(251 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207116.1| (NC_000915) conserved hypothetical protein... 515 e-145
ref|NP_223021.1| (NC_000921) putative [Helicobacter pylori ... 505 e-142
ref|NP_282741.1| (NC_002163) hypothetical protein Cj1613c [... 279 2e-74
ref|NP_439014.1| (NC_000907) conserved hypothetical protein... 207 7e-53
ref|NP_489067.1| (NC_003272) hypothetical protein [Nostoc s... 99 6e-20
ref|NP_233292.1| (NC_002506) conserved hypothetical protein... 96 4e-19
ref|NP_245236.1| (NC_002663) unknown [Pasteurella multocida... 86 5e-16
ref|NP_244979.1| (NC_002663) unknown [Pasteurella multocida... 80 2e-14
gb|AAG23392.1| (AY008342) HugZ [Plesiomonas shigelloides] 75 9e-13
>ref|NP_207116.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||F64559 conserved hypothetical protein HP0318 - Helicobacter pylori
(strain 26695)
gb|AAD07387.1| (AE000550) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 251
Score = 515 bits (1326), Expect = e-145
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MLNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYNHNQTLRIEFNHE 60
MLNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYNHNQTLRIEFNHE
Sbjct: 1 MLNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYNHNQTLRIEFNHE 60
Query: 61 VKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFKESFDSVCLATLHPNGHVVCSYAPLM 120
VKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFKESFDSVCLATLHPNGHVVCSYAPLM
Sbjct: 61 VKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFKESFDSVCLATLHPNGHVVCSYAPLM 120
Query: 121 SDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGA 180
SDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGA
Sbjct: 121 SDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGA 180
Query: 181 EFDKAFDSFIEKTGGAGGIKTIRAMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGD 240
EFDKAFDSFIEKTGGAGGIKTIRAMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGD
Sbjct: 181 EFDKAFDSFIEKTGGAGGIKTIRAMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGD 240
Query: 241 KGNPHNFAHKK 251
KGNPHNFAHKK
Sbjct: 241 KGNPHNFAHKK 251
>ref|NP_223021.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71947 hypothetical protein jhp0301 - Helicobacter pylori (strain J99)
gb|AAD05886.1| (AE001467) putative [Helicobacter pylori J99]
Length = 251
Score = 505 bits (1301), Expect = e-142
Identities = 245/251 (97%), Positives = 249/251 (98%)
Query: 1 MLNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYNHNQTLRIEFNHE 60
MLNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYN+NQTLRIEFNHE
Sbjct: 1 MLNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYNNNQTLRIEFNHE 60
Query: 61 VKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFKESFDSVCLATLHPNGHVVCSYAPLM 120
VKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAF++ FDSVCLATLHPNGHVVCSYAPLM
Sbjct: 61 VKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFRKDFDSVCLATLHPNGHVVCSYAPLM 120
Query: 121 SDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGA 180
+DGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGA
Sbjct: 121 TDGKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGA 180
Query: 181 EFDKAFDSFIEKTGGAGGIKTIRAMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGD 240
EFDKAFDSFIEKTGGAGGIKTIR MQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGD
Sbjct: 181 EFDKAFDSFIEKTGGAGGIKTIRTMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGD 240
Query: 241 KGNPHNFAHKK 251
KGNPHNFAHKK
Sbjct: 241 KGNPHNFAHKK 251
>ref|NP_282741.1| (NC_002163) hypothetical protein Cj1613c [Campylobacter jejuni]
pir||C81257 hypothetical protein Cj1613c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73601.1| (AL139079) hypothetical protein Cj1613c [Campylobacter jejuni]
Length = 251
Score = 279 bits (713), Expect = 2e-74
Identities = 138/246 (56%), Positives = 173/246 (70%), Gaps = 1/246 (0%)
Query: 5 IIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYNHNQTLRIEFNHEVKDP 64
II HMN HH ++ L KKFG + ++V KSVD G+ + YN + LR+EF + D
Sbjct: 6 IISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGLDLVYNDKENLRVEFPKKA-DE 64
Query: 65 KDYKNAIIELCQSVEKTHDLKGVEEEVKAFKESFDSVCLATLHPNGHVVCSYAPLMSDGK 124
K+AII LC S + + GVE+E+ F SF+SV LATL+ NG VVCSYAP +S
Sbjct: 65 NTIKDAIISLCMSAKSEQNFSGVEKELNEFMLSFNSVALATLNANGEVVCSYAPFVSTQW 124
Query: 125 QYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGAEFDK 184
YIY+SEV+EHF +K NP+N+E+MFLEDESKA S ILRKRLRY+ NA F+ERG FD+
Sbjct: 125 GNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAVSVILRKRLRYRVNASFLERGERFDQ 184
Query: 185 AFDSFIEKTGGAGGIKTIRAMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGDKGNP 244
+D F ++TGG GGIKTIR M DFHL+ L+FK+GRFVKGFGQAYDI +A+VG GNP
Sbjct: 185 IYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKGRFVKGFGQAYDIENGNVAHVGASGNP 244
Query: 245 HNFAHK 250
H F HK
Sbjct: 245 HKFLHK 250
>ref|NP_439014.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44061|Y854_HAEIN Protein HI0854
pir||G64014 hypothetical protein HI0854 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22513.1| (U32767) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 253
Score = 207 bits (528), Expect = 7e-53
Identities = 114/245 (46%), Positives = 149/245 (60%), Gaps = 3/245 (1%)
Query: 3 NRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYNHNQTLRIEFNHEVK 62
NRII HMN HH +DM L KKFG +V +VD G+ YN +TLR+EF +
Sbjct: 4 NRIITHMNDHHQDDMAVLCKKFGGEKEITDVTLVNVDFAGLDFKYNGGKTLRVEFPQQA- 62
Query: 63 DPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFKESFDSVCLATLHPNGHVVCSYAPLMSD 122
D K II LC + + ++ ++ F++ F S L+TL +G + SYAP++
Sbjct: 63 DAGSIKQVIINLCVENKPVANYDRIKAKIDEFRQEFKSCVLSTLDKDGLPMASYAPIIFF 122
Query: 123 GKQYYIYVSEVAEHFAGLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGAEF 182
+YYIY+S +AEH+ LK NP+ VEVMFLEDE+KAKS I+R RLRYK +ARFI R
Sbjct: 123 DGKYYIYISAIAEHYENLKRNPNQVEVMFLEDENKAKSIIVRTRLRYKASARFIPREDPI 182
Query: 183 -DKAFDSFIEKTGGAGGIKTIRAMQDFHLIALDFKEGRFVKGFGQAYDI-LGDKIAYVGD 240
+K D E GGIKTIR DF L+ L F GRFV+GFGQAY I +I+++G
Sbjct: 183 VEKVLDKLAETMNDVGGIKTIREFTDFDLVELTFGTGRFVRGFGQAYLIDANGEISHIGV 242
Query: 241 KGNPH 245
KGNPH
Sbjct: 243 KGNPH 247
>ref|NP_489067.1| (NC_003272) hypothetical protein [Nostoc sp. PCC 7120]
dbj|BAB76726.1| (AP003598) ORF_ID:alr5027~hypothetical protein [Nostoc sp. PCC
7120]
Length = 165
Score = 98.6 bits (244), Expect = 6e-20
Identities = 62/165 (37%), Positives = 91/165 (54%), Gaps = 9/165 (5%)
Query: 84 LKGVEEEVKAFKESFDSVCLATLHPNGHVVCSYAP-LMSDGKQYYIYVSEVAEHFAGLKN 142
L+ + E F + F S ++T+ G SYAP ++ D K YIYVS +A H ++
Sbjct: 4 LEKAQAEYAGFIQEFQSAIISTISEQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEA 63
Query: 143 NPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGAE-FDKAFDSFIEKTGGAGGIKT 201
NP V V+F++DE+K R+RL + A IER ++ +++ D F E+ G I+
Sbjct: 64 NPL-VNVLFVDDEAKTNQIFARRRLSFDCTATLIERESQKWNQVVDQFQERFGQI--IEV 120
Query: 202 IRAMQDFHLIALDFKEGRFVKGFGQAYDILGDK----IAYVGDKG 242
+R + DF + L KEGRFV GFG AY I GD+ + GDKG
Sbjct: 121 LRGLADFRIFQLTPKEGRFVIGFGAAYHISGDRLDTLVPITGDKG 165
>ref|NP_233292.1| (NC_002506) conserved hypothetical protein [Vibrio cholerae]
pir||A82403 conserved hypothetical protein VCA0907 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF96804.1| (AE004418) conserved hypothetical protein [Vibrio cholerae]
Length = 176
Score = 95.9 bits (237), Expect = 4e-19
Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 80 KTHDLKG-VEEEVKAFKESFDSVCLATLHPNGHVVCSYAPLMSDGKQYYIYVSEVAEHFA 138
K L+G +E E+K F++ ++ LAT+ G SYAP + + + Y++ +S +A H
Sbjct: 6 KQERLQGRLEPEIKEFRQERKTLQLATVDAQGRPNVSYAPFVQNQEGYFVLISHIARHAR 65
Query: 139 GLKNNPHNVEVMFLEDESKAKSAILRKRLRYKTNARFIERGAEFDKAFDSFIEKTGGAGG 198
L+ NP V +M +EDE++AK RKRL + A +ER +E + I + G G
Sbjct: 66 NLEVNP-QVSIMMIEDETEAKQLFARKRLTFDAVASMVERDSEL---WCQVIAQMGERFG 121
Query: 199 --IKTIRAMQDFHLIALDFKEGRFVKGFGQAYDILGDKI 235
I + +QDF L L ++G FVKGFGQAY + GD +
Sbjct: 122 EIIDGLSQLQDFMLFRLQPEQGLFVKGFGQAYQVSGDDL 160
>ref|NP_245236.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02383.1| (AE006065) unknown [Pasteurella multocida]
Length = 171
Score = 85.5 bits (210), Expect = 5e-16
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 6/148 (4%)
Query: 90 EVKAFKESFDSVCLATLHPNGHVVCSYAPLMSDGKQYYIYVSEVAEHFAGLKNNPHNVEV 149
E++ K +V LAT+ +G+ SYAP + +Y +++S +A H L+ P V +
Sbjct: 16 EIQELKAQCKTVMLATVGEDGNPNVSYAPFAINNGEYQVFISTIARHARNLQEVP-KVSL 74
Query: 150 MFLEDESKAKSAILRKRLRYKTNARFIERGAEFDKAFDSFIEKTGGAGG--IKTIRAMQD 207
M +EDES+++ R+RL + AR +ER +E + S +E G + + M+D
Sbjct: 75 MLIEDESQSRQIFARRRLSFDAVARVVERESE---EWHSGVEALKARHGALMDELSRMKD 131
Query: 208 FHLIALDFKEGRFVKGFGQAYDILGDKI 235
FHL + +G FVKGFGQA+ + D +
Sbjct: 132 FHLFSFKPSQGLFVKGFGQAFQVSNDDL 159
>ref|NP_244979.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02126.1| (AE006038) unknown [Pasteurella multocida]
Length = 184
Score = 80.1 bits (196), Expect = 2e-14
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 87 VEEEVKAFKESFDSVCLATLHPNGHVVCSYAPLMSDGKQYYIYVSEVAEHFAGLKNNPHN 146
+ E+ F+ + ++ LAT++ G SYAP Y + +SE+A H L+ P
Sbjct: 13 ISTEIVDFRNACQTIQLATVNEKGEPNASYAPFAYHNDCYVVLISEMARHARNLQQVP-K 71
Query: 147 VEVMFLEDESKAKSAILRKRLRYKTNARFIERGAEFDKAFDSFIEKTGGAGGIKTIRAMQ 206
V +M +EDE A+ RKRL A IE+ +E K + + + G I + +
Sbjct: 72 VSLMLIEDEKTARELFARKRLTTNAEACLIEKESEEGKQLLAALRQRYGE-RIDGLARLS 130
Query: 207 DFHLIALDFKEGRFVKGFGQAYDILGD-KIAYV-GDKGNPHNFAH 249
DF L +L K+ +VKGFGQA+ + D KI ++ G G+ H H
Sbjct: 131 DFKLFSLSPKQSLYVKGFGQAFHVDKDGKILHLRGRHGHGHGHGH 175
>gb|AAG23392.1| (AY008342) HugZ [Plesiomonas shigelloides]
Length = 185
Score = 74.7 bits (182), Expect = 9e-13
Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 4/153 (2%)
Query: 87 VEEEVKAFKESFDSVCLATLHPNGHVVCSYAPLMSDGKQYYIYVSEVAEHFAGLKNNPHN 146
++ E+ F+ ++ LAT+ +G SYAP + YY+ +SE+A H L+ P
Sbjct: 19 LQPEIAEFRNECRTLVLATVDADGMPNVSYAPFVQLTDGYYVLISEIARHARNLQQVP-R 77
Query: 147 VEVMFLEDESKAKSAILRKRLRYKTNARFIERG-AEFDKAFDSFIEKTGGAGGIKTIRAM 205
+M +EDES+++ RKRL + + R A + +A + + G + + M
Sbjct: 78 TSLMMIEDESQSRQLFARKRLTFDARVEKVARDTASWQEAVAALEARHGDI--VANLSQM 135
Query: 206 QDFHLIALDFKEGRFVKGFGQAYDILGDKIAYV 238
DF L + ++G +VKGFGQA+ + D + V
Sbjct: 136 ADFILFRMVPEQGLYVKGFGQAFQVSSDDLVDV 168
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.320 0.138 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,389,409
Number of Sequences: 1026957
Number of extensions: 6827865
Number of successful extensions: 16042
Number of sequences better than 1.0e-02: 9
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16022
Number of HSP's gapped (non-prelim): 9
length of query: 251
length of database: 324,149,939
effective HSP length: 118
effective length of query: 133
effective length of database: 202,969,013
effective search space: 26994878729
effective search space used: 26994878729
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 96 (41.6 bits)