BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644665|ref|NP_206834.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(91 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206834.1| (NC_000915) conserved hypothetical protein... 184 1e-46
ref|NP_222750.1| (NC_000921) putative [Helicobacter pylori ... 131 2e-30
ref|NP_282255.1| (NC_002163) hypothetical protein Cj1107 [C... 72 2e-12
ref|NP_421270.1| (NC_002696) conserved hypothetical protein... 69 1e-11
ref|NP_520586.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN... 65 1e-10
ref|NP_348448.1| (NC_003030) Uncharacterized conserved prot... 65 1e-10
ref|NP_283819.1| (NC_003116) hypothetical protein NMA1046 [... 64 3e-10
ref|NP_539732.1| (NC_003317) PROTEIN YLJA [Brucella meliten... 64 3e-10
sp|Q8YHI3|Y815_BRUME Hypothetical protein BMEI0815 64 3e-10
ref|NP_273878.1| (NC_003112) conserved hypothetical protein... 64 5e-10
ref|NP_385592.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 64 5e-10
ref|NP_286653.1| (NC_002655) orf, hypothetical protein [Esc... 62 2e-09
ref|NP_455434.1| (NC_003198) conserved hypothetical protein... 62 2e-09
gb|AAG17283.1|AF254897_2 (AF254897) YljA [Bradyrhizobium ja... 61 2e-09
ref|NP_642326.1| (NC_003919) conserved hypothetical protein... 61 3e-09
ref|NP_354370.1| (NC_003062) AGR_C_2522p [Agrobacterium tum... 61 3e-09
ref|NP_102424.1| (NC_002678) hypothetical protein [Mesorhiz... 60 4e-09
ref|NP_637331.1| (NC_003902) conserved hypothetical protein... 60 7e-09
ref|NP_404960.1| (NC_003143) conserved hypothetical protein... 59 9e-09
ref|NP_294309.1| (NC_001263) conserved hypothetical protein... 58 3e-08
sp|Q9RWS9|Y586_DEIRA Hypothetical protein DR0586 58 3e-08
sp|Q9I0L7|YQ21_PSEAE Hypothetical protein PA2621 54 4e-07
ref|NP_230788.1| (NC_002505) conserved hypothetical protein... 52 1e-06
ref|NP_298731.1| (NC_002488) conserved hypothetical protein... 52 1e-06
ref|NP_251311.1| (NC_002516) conserved hypothetical protein... 50 5e-06
ref|NP_104008.1| (NC_002678) hypothetical protein [Mesorhiz... 50 7e-06
ref|NP_386462.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 42 0.001
ref|NP_355189.1| (NC_003062) AGR_C_4060p [Agrobacterium tum... 42 0.002
>ref|NP_206834.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|P56066|Y032_HELPY Hypothetical protein HP0032
pir||H64523 conserved hypothetical protein HP0032 - Helicobacter pylori
(strain 26695)
gb|AAD07101.1| (AE000525) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 91
Score = 184 bits (468), Expect = 1e-46
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MKMYNIPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVY 60
MKMYNIPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVY
Sbjct: 1 MKMYNIPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVY 60
Query: 61 PYDIARHRAAWVRDKAKALEFPLKLLVEEIK 91
PYDIARHRAAWVRDKAKALEFPLKLLVEEIK
Sbjct: 61 PYDIARHRAAWVRDKAKALEFPLKLLVEEIK 91
>ref|NP_222750.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZN32|Y032_HELPJ Hypothetical protein JHP0028
pir||B71983 hypothetical protein jhp0028 - Helicobacter pylori (strain J99)
gb|AAD05612.1| (AE001442) putative [Helicobacter pylori J99]
Length = 90
Score = 131 bits (329), Expect = 2e-30
Identities = 63/91 (69%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Query: 1 MKMYNIPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVY 60
MKM+ IPTPTM+QVIM++D ITT EF++SALRDFFDK LEEA+ L SIHRDG+GVCGVY
Sbjct: 1 MKMHQIPTPTMSQVIMLNDSITTAEFMVSALRDFFDKPLEEAQKLMLSIHRDGDGVCGVY 60
Query: 61 PYDIARHRAAWVRDKAKALEFPLKLLVEEIK 91
PY+IA ++A VRDKA+A FPL+L+V+E+K
Sbjct: 61 PYEIAIYKAVCVRDKARA-RFPLRLMVQEVK 90
>ref|NP_282255.1| (NC_002163) hypothetical protein Cj1107 [Campylobacter jejuni]
sp|Q9PNI7|YB07_CAMJE Hypothetical protein Cj1107
pir||F81314 hypothetical protein Cj1107 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73362.1| (AL139077) hypothetical protein Cj1107 [Campylobacter jejuni]
Length = 96
Score = 71.6 bits (174), Expect = 2e-12
Identities = 34/89 (38%), Positives = 53/89 (59%)
Query: 1 MKMYNIPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVY 60
++ + P M +VI+++D +TT +FVI L + F ++LE+A IH +G G+CG+Y
Sbjct: 7 LEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQNLEKASQTMLEIHHNGSGICGIY 66
Query: 61 PYDIARHRAAWVRDKAKALEFPLKLLVEE 89
+IA + V D AK FPL+ VEE
Sbjct: 67 TQEIALSKQKKVMDAAKLANFPLQAKVEE 95
>ref|NP_421270.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
sp|Q9A5I0|YO67_CAUCR Hypothetical protein CC2467
gb|AAK24438.1| (AE005915) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 119
Score = 68.9 bits (167), Expect = 1e-11
Identities = 31/81 (38%), Positives = 53/81 (65%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P++ +V++++D T EFV+ L FF+KS E+A + +H++G GVCGVY Y++A +
Sbjct: 38 PSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETK 97
Query: 69 AAWVRDKAKALEFPLKLLVEE 89
A V D A+ + PL+ +E+
Sbjct: 98 VAQVIDSARRHQHPLQCTMEK 118
>ref|NP_520586.1| (NC_003295) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
sp|Q8XWK9|YO65_RALSO Hypothetical protein RSc2465
emb|CAD16172.1| (AL646070) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
Length = 108
Score = 65.5 bits (158), Expect = 1e-10
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P M +V++++D T EFV+ L+ +F K E A + ++HR+G GVCG+Y DIA +
Sbjct: 27 PAMYKVLLLNDDYTPMEFVVMILQQYFSKDRETATQIMLTVHREGRGVCGIYTRDIAATK 86
Query: 69 AAWVRDKAKALEFPLKLLVEE 89
V A+ PL+ ++EE
Sbjct: 87 VELVSTHARQAGHPLQCVMEE 107
>ref|NP_348448.1| (NC_003030) Uncharacterized conserved protein [Clostridium
acetobutylicum]
sp|Q97I31|YI23_CLOAB Hypothetical protein CAC1823
gb|AAK79788.1|AE007691_6 (AE007691) Uncharacterized conserved protein [Clostridium
acetobutylicum]
Length = 101
Score = 65.5 bits (158), Expect = 1e-10
Identities = 35/87 (40%), Positives = 51/87 (58%)
Query: 4 YNIPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYD 63
+ I P M +VI+ +D TT EFVI L + F+K A +T +H++G G+ GVYPYD
Sbjct: 15 HKIEKPKMYKVILHNDDYTTMEFVIEILINVFNKVPANAVKITFDVHKNGIGIAGVYPYD 74
Query: 64 IARHRAAWVRDKAKALEFPLKLLVEEI 90
IA + V+ A +PLKL + E+
Sbjct: 75 IAATKINEVKKLAYKNGYPLKLTMGEV 101
>ref|NP_283819.1| (NC_003116) hypothetical protein NMA1046 [Neisseria meningitidis
Z2491]
sp|Q9JV14|YA46_NEIMA Hypothetical protein NMA1046
pir||F81869 hypothetical protein NMA1046 [imported] - Neisseria meningitidis
(group A strain Z2491)
emb|CAB84312.1| (AL162755) hypothetical protein NMA1046 [Neisseria meningitidis
Z2491]
Length = 103
Score = 64.3 bits (155), Expect = 3e-10
Identities = 32/86 (37%), Positives = 50/86 (57%)
Query: 5 NIPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDI 64
N P V +++D TT EFV+ L + F + E+A A+ +H +G+G+CG Y DI
Sbjct: 18 NTQPPKRYGVFLLNDDYTTMEFVVEILTEVFMLAQEQAVAVMLLVHHEGKGLCGTYTRDI 77
Query: 65 ARHRAAWVRDKAKALEFPLKLLVEEI 90
A+ + V ++AK PLK +VEE+
Sbjct: 78 AQTKQHQVMERAKTEGHPLKCIVEEV 103
>ref|NP_539732.1| (NC_003317) PROTEIN YLJA [Brucella melitensis]
gb|AAL51996.1| (AE009523) PROTEIN YLJA [Brucella melitensis]
Length = 136
Score = 63.9 bits (154), Expect = 3e-10
Identities = 27/81 (33%), Positives = 52/81 (63%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P++ +V++++D T EFV+ L+ FF K+L++A + +H G G CGV+ Y++A +
Sbjct: 55 PSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATRIMLHVHNHGVGECGVFTYEVAETK 114
Query: 69 AAWVRDKAKALEFPLKLLVEE 89
+ V D A+ + PL+ ++E+
Sbjct: 115 VSQVMDFARQNQHPLQCVMEK 135
>sp|Q8YHI3|Y815_BRUME Hypothetical protein BMEI0815
Length = 116
Score = 63.9 bits (154), Expect = 3e-10
Identities = 27/81 (33%), Positives = 52/81 (63%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P++ +V++++D T EFV+ L+ FF K+L++A + +H G G CGV+ Y++A +
Sbjct: 35 PSLYRVLLLNDDYTPMEFVVHVLQRFFQKNLDDATRIMLHVHNHGVGECGVFTYEVAETK 94
Query: 69 AAWVRDKAKALEFPLKLLVEE 89
+ V D A+ + PL+ ++E+
Sbjct: 95 VSQVMDFARQNQHPLQCVMEK 115
>ref|NP_273878.1| (NC_003112) conserved hypothetical protein [Neisseria meningitidis
MC58]
sp|Q9JZZ5|Y837_NEIMB Hypothetical protein NMB0837
pir||E81153 conserved hypothetical protein NMB0837 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41248.1| (AE002436) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 100
Score = 63.5 bits (153), Expect = 5e-10
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 5 NIPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDI 64
N P V +++D TT EFV+ L + F E+A A+ +H +G+G+CG Y DI
Sbjct: 15 NTLPPKRYGVFLLNDDYTTMEFVVEILTEIFMLGQEQAVAVMLLVHHEGKGLCGTYTRDI 74
Query: 65 ARHRAAWVRDKAKALEFPLKLLVEEI 90
A+ + V +AKA PL+ +VEEI
Sbjct: 75 AQTKQQQVMQRAKAEGHPLQCIVEEI 100
>ref|NP_385592.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
sp|Q92Q63|YE86_RHIME Hypothetical protein R01486
emb|CAC46065.1| (AL591787) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 117
Score = 63.5 bits (153), Expect = 5e-10
Identities = 29/81 (35%), Positives = 49/81 (59%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P++ +V++++D T EFVI L FF K+ EEA + +H G G CGV+ Y++A +
Sbjct: 36 PSLYRVLLLNDDYTPMEFVIHILERFFQKNREEATVIMLHVHNHGVGECGVFTYEVAETK 95
Query: 69 AAWVRDKAKALEFPLKLLVEE 89
V D A+ + PL+ ++E+
Sbjct: 96 VTQVMDFARQHQHPLQCVMEK 116
>ref|NP_286653.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_308994.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_415402.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P75832|YLJA_ECOLI Protein yljA
pir||A64827 yljA protein - Escherichia coli
gb|AAC73968.1| (AE000190) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35600.1| (D90725) ORF_ID:o213#6 [Escherichia coli]
gb|AAG55263.1|AE005269_7 (AE005269) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB34390.1| (AP002553) hypothetical protein [Escherichia coli O157:H7]
Length = 106
Score = 61.6 bits (148), Expect = 2e-09
Identities = 30/81 (37%), Positives = 47/81 (57%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P+M +VI+V+D T EFVI L+ FF +E A L ++H G+ +CGV+ ++A +
Sbjct: 25 PSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETK 84
Query: 69 AAWVRDKAKALEFPLKLLVEE 89
A V A+ E PL +E+
Sbjct: 85 VAMVNKYARENEHPLLCTLEK 105
>ref|NP_455434.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_459921.1| (NC_003197) putative cytoplasmic protein [Salmonella typhimurium
LT2]
sp|Q8XG13|YLJA_SALTY Hypothetical protein yljA
gb|AAL19880.1| (AE008740) putative cytoplasmic protein [Salmonella typhimurium
LT2]
emb|CAD05346.1| (AL627268) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 106
Score = 61.6 bits (148), Expect = 2e-09
Identities = 30/81 (37%), Positives = 47/81 (57%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P+M +VI+V+D T EFVI L+ FF +E A L ++H G+ +CGV+ ++A +
Sbjct: 25 PSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETK 84
Query: 69 AAWVRDKAKALEFPLKLLVEE 89
A V A+ E PL +E+
Sbjct: 85 VAMVNKYARENEHPLLCTLEK 105
>gb|AAG17283.1|AF254897_2 (AF254897) YljA [Bradyrhizobium japonicum]
Length = 97
Score = 61.2 bits (147), Expect = 2e-09
Identities = 28/81 (34%), Positives = 47/81 (57%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P + +V++++D T EFV+ L FF K +E A + +H G G CGV+ Y+IA +
Sbjct: 16 PNLYRVLILNDDYTPMEFVVHVLEKFFQKDVEAATKIMLHVHHHGIGECGVFTYEIAETK 75
Query: 69 AAWVRDKAKALEFPLKLLVEE 89
V D A+ + PL+ ++E+
Sbjct: 76 VTQVMDFARKHQHPLQCVMEK 96
>ref|NP_642326.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM36862.1| (AE011835) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 106
Score = 60.8 bits (146), Expect = 3e-09
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 6 IPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIA 65
+ P QV++++D T +FV++ L FF+ +LE+A + +H G GVCGVY ++A
Sbjct: 22 VAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNLEQATQIMLHVHTRGRGVCGVYSREVA 81
Query: 66 RHRAAWVRDKAKALEFPLKLLVEE 89
+ A V + ++ + PL +E+
Sbjct: 82 ESKVAQVNEFSRMNQHPLLCTMEQ 105
>ref|NP_354370.1| (NC_003062) AGR_C_2522p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_532053.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK87155.1| (AE008063) AGR_C_2522p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL42369.1| (AE009098) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 117
Score = 60.8 bits (146), Expect = 3e-09
Identities = 28/81 (34%), Positives = 48/81 (58%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P + +V++++D T EFVI L FF K E A + +H+ G G CGV+ Y++A +
Sbjct: 36 PNLYRVLLLNDDYTPMEFVIHILERFFQKDREAATRIMLHVHQHGVGECGVFTYEVAETK 95
Query: 69 AAWVRDKAKALEFPLKLLVEE 89
+ V D A+ + PL+ ++E+
Sbjct: 96 VSQVMDFARQHQHPLQCVMEK 116
>ref|NP_102424.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
sp|Q98MA3|Y664_RHILO Hypothetical protein mll0664
dbj|BAB48210.1| (AP002995) hypothetical protein [Mesorhizobium loti]
Length = 109
Score = 60.5 bits (145), Expect = 4e-09
Identities = 27/81 (33%), Positives = 48/81 (58%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P++ +V++++D T EFV+ L FF K E A + +H G G CGVY +++A +
Sbjct: 28 PSLYRVLILNDDYTPMEFVVHVLERFFQKDREAATRIMLHVHNHGVGECGVYTFEVAETK 87
Query: 69 AAWVRDKAKALEFPLKLLVEE 89
+ V D A+ + PL+ ++E+
Sbjct: 88 VSQVMDFARQNQHPLQCVMEK 108
>ref|NP_637331.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM41255.1| (AE012301) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 106
Score = 59.7 bits (143), Expect = 7e-09
Identities = 27/84 (32%), Positives = 48/84 (57%)
Query: 6 IPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIA 65
+ P QV++++D T +FV++ L+ FF+ LE A + +H G GVCGVY ++A
Sbjct: 22 VAPPPRYQVLLLNDDYTPMDFVVTVLQQFFNLELERATQVMLHVHTRGRGVCGVYSREVA 81
Query: 66 RHRAAWVRDKAKALEFPLKLLVEE 89
+ A V + ++ + PL +E+
Sbjct: 82 ESKVAQVNEFSRMNQHPLLCTMEQ 105
>ref|NP_404960.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
sp|Q8ZGD5|YD67_YERPE Hypothetical protein YPO1367
emb|CAC90196.1| (AJ414148) conserved hypothetical protein [Yersinia pestis]
Length = 106
Score = 59.3 bits (142), Expect = 9e-09
Identities = 29/81 (35%), Positives = 46/81 (55%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P+M +VI+ +D T EFVI L+ FF +E A L ++H G+ +CGV+ ++A +
Sbjct: 25 PSMYKVILNNDDYTPMEFVIDVLQKFFSYDIERATQLMLNVHYQGKAICGVFTAEVAETK 84
Query: 69 AAWVRDKAKALEFPLKLLVEE 89
A V A+ E PL +E+
Sbjct: 85 VAHVNQYARENEHPLLCTLEK 105
>ref|NP_294309.1| (NC_001263) conserved hypothetical protein [Deinococcus
radiodurans]
pir||B75500 conserved hypothetical protein - Deinococcus radiodurans (strain
R1)
gb|AAF10166.1|AE001917_3 (AE001917) conserved hypothetical protein [Deinococcus radiodurans]
Length = 139
Score = 57.8 bits (138), Expect = 3e-08
Identities = 26/80 (32%), Positives = 48/80 (59%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P + +V++++D T ++V+ L FF K+ +EA+ + ++H G+GV GVY D+A +
Sbjct: 54 PRLWRVLLLNDDYTPMDYVVQVLEQFFRKTEQEAELIMLAVHHKGQGVAGVYTRDVAETK 113
Query: 69 AAWVRDKAKALEFPLKLLVE 88
A V A+ PL+++ E
Sbjct: 114 VAQVTAHAQREGHPLRVVAE 133
>sp|Q9RWS9|Y586_DEIRA Hypothetical protein DR0586
Length = 113
Score = 57.8 bits (138), Expect = 3e-08
Identities = 26/80 (32%), Positives = 48/80 (59%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P + +V++++D T ++V+ L FF K+ +EA+ + ++H G+GV GVY D+A +
Sbjct: 28 PRLWRVLLLNDDYTPMDYVVQVLEQFFRKTEQEAELIMLAVHHKGQGVAGVYTRDVAETK 87
Query: 69 AAWVRDKAKALEFPLKLLVE 88
A V A+ PL+++ E
Sbjct: 88 VAQVTAHAQREGHPLRVVAE 107
>sp|Q9I0L7|YQ21_PSEAE Hypothetical protein PA2621
Length = 122
Score = 53.9 bits (128), Expect = 4e-07
Identities = 24/81 (29%), Positives = 45/81 (54%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P + +V++ +D T +FV+ L FF+ E+A + ++H G+ VCG++ D+A +
Sbjct: 40 PPLYKVVLFNDDYTPMDFVVEVLEVFFNMDREKATKIMLTVHTQGKAVCGLFTRDVAETK 99
Query: 69 AAWVRDKAKALEFPLKLLVEE 89
A V A+ + PL +E+
Sbjct: 100 AMQVNQYARESQHPLLCEIEK 120
>ref|NP_230788.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
sp|Q9KSW3|YB43_VIBCH Hypothetical protein VC1143
pir||D82236 conserved hypothetical protein VC1143 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94302.1| (AE004194) conserved hypothetical protein [Vibrio cholerae]
Length = 106
Score = 52.4 bits (124), Expect = 1e-06
Identities = 24/84 (28%), Positives = 44/84 (51%)
Query: 6 IPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIA 65
+ P+M V++ +D T +FVI L FF +E A + +H +G+ +CG + ++A
Sbjct: 22 VKPPSMYHVVLNNDDYTPMDFVIEILERFFSMDIERATQVMLKVHYEGKAICGTFTAEVA 81
Query: 66 RHRAAWVRDKAKALEFPLKLLVEE 89
+ A V ++ E PL +E+
Sbjct: 82 ETKVAQVTMYSRENEHPLLCTMEQ 105
>ref|NP_298731.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
sp|Q9PDD7|YE42_XYLFA Hypothetical protein Xf1442
pir||H82680 conserved hypothetical protein XF1442 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84251.1|AE003974_6 (AE003974) conserved hypothetical protein [Xylella fastidiosa
9a5c]
Length = 106
Score = 52.0 bits (123), Expect = 1e-06
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 6 IPTPTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIA 65
+ P QV++++D T +FVI L+ FF L++A + +H G GVCG Y ++A
Sbjct: 22 VAPPPRYQVLLLNDDYTPMDFVIVVLQQFFAMDLKKATQVMLHVHTRGCGVCGFYTREVA 81
Query: 66 RHRAAWVRDKAKALEFPL 83
+ A V + ++ + PL
Sbjct: 82 ESKVAQVNEFSRIHQHPL 99
>ref|NP_251311.1| (NC_002516) conserved hypothetical protein [Pseudomonas
aeruginosa]
pir||C83319 conserved hypothetical protein PA2621 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06009.1|AE004690_9 (AE004690) conserved hypothetical protein [Pseudomonas
aeruginosa]
Length = 78
Score = 50.1 bits (118), Expect = 5e-06
Identities = 22/76 (28%), Positives = 42/76 (54%)
Query: 14 VIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHRAAWVR 73
+++ +D T +FV+ L FF+ E+A + ++H G+ VCG++ D+A +A V
Sbjct: 1 MVLFNDDYTPMDFVVEVLEVFFNMDREKATKIMLTVHTQGKAVCGLFTRDVAETKAMQVN 60
Query: 74 DKAKALEFPLKLLVEE 89
A+ + PL +E+
Sbjct: 61 QYARESQHPLLCEIEK 76
>ref|NP_104008.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
sp|Q98HS2|YR36_RHILO Hypothetical protein mll2736
dbj|BAB49794.1| (AP003000) hypothetical protein [Mesorhizobium loti]
Length = 101
Score = 49.7 bits (117), Expect = 7e-06
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P + +VI+++D T EFV++ L+ F S ++A + + HR G V V+ D+A +
Sbjct: 19 PKLYKVILINDDFTPREFVVTVLKGEFKLSEDQAHRIMITAHRRGVCVVAVFTKDVAETK 78
Query: 69 AAWVRDKAKALEFPLKLLVE 88
A D KA +PL E
Sbjct: 79 ATRATDAGKAKGYPLLFTTE 98
>ref|NP_386462.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium
meliloti]
sp|Q92N66|YN56_RHIME Hypothetical protein R02356
emb|CAC46935.1| (AL591790) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium
meliloti]
Length = 101
Score = 42.0 bits (97), Expect = 0.001
Identities = 25/80 (31%), Positives = 37/80 (46%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P + +V++V+D T EFV+ L+ F S E + + H+ G V V D+A +
Sbjct: 19 PKLYKVLLVNDDFTPREFVVMVLKAVFRMSEEAGYRVMMTAHKMGISVVVVCAKDVAETK 78
Query: 69 AAWVRDKAKALEFPLKLLVE 88
A D K FPL E
Sbjct: 79 AKEATDLGKEAGFPLLFTAE 98
>ref|NP_355189.1| (NC_003062) AGR_C_4060p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_532905.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK87974.1| (AE008138) AGR_C_4060p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL43221.1| (AE009173) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 103
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/80 (31%), Positives = 37/80 (46%)
Query: 9 PTMAQVIMVDDPITTTEFVISALRDFFDKSLEEAKALTSSIHRDGEGVCGVYPYDIARHR 68
P + +V++++D T EFV L+ F S + + + + HR G V V DIA +
Sbjct: 21 PKLYKVMLLNDDYTPREFVTVVLKAVFRMSEDTGRRVMMTAHRFGSAVVVVCERDIAETK 80
Query: 69 AAWVRDKAKALEFPLKLLVE 88
A D K FPL E
Sbjct: 81 AKEATDLGKEAGFPLMFTTE 100
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.136 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,126,842
Number of Sequences: 1026957
Number of extensions: 1687275
Number of successful extensions: 5031
Number of sequences better than 1.0e-02: 28
Number of HSP's better than 0.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5002
Number of HSP's gapped (non-prelim): 28
length of query: 91
length of database: 324,149,939
effective HSP length: 67
effective length of query: 24
effective length of database: 255,343,820
effective search space: 6128251680
effective search space used: 6128251680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 90 (39.3 bits)