BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644956|ref|NP_207126.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(312 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207126.1| (NC_000915) conserved hypothetical protein... 615 e-175
ref|NP_223030.1| (NC_000921) putative tetraacyldisaccharide... 580 e-165
ref|NP_281972.1| (NC_002163) putative tetraacyldisaccharide... 201 9e-51
ref|NP_214138.1| (NC_000918) hypothetical protein [Aquifex ... 117 1e-25
ref|NP_662559.1| (NC_002932) tetraacyldisaccharide 4'-kinas... 92 6e-18
ref|NP_604027.1| (NC_003454) Tetraacyldisaccharide 4'-kinas... 88 1e-16
ref|NP_438232.1| (NC_000907) conserved hypothetical protein... 75 1e-12
ref|NP_384918.1| (NC_003047) PUTATIVE TETRAACYLDISACCHARIDE... 72 8e-12
ref|NP_353722.1| (NC_003062) AGR_C_1257p [Agrobacterium tum... 72 8e-12
sp|Q47909|LPXK_FRANO Tetraacyldisaccharide 4'-kinase (Lipid... 68 2e-10
ref|NP_231511.1| (NC_002505) tetraacyldisaccharide 4`-kinas... 67 3e-10
ref|NP_219912.1| (NC_000117) probable tetraacyldisaccharide... 66 4e-10
sp|O84407|LPXK_CHLTR Tetraacyldisaccharide 4'-kinase (Lipid... 66 4e-10
ref|NP_297056.1| (NC_002620) tetraacyldisaccharide 4`-kinas... 66 6e-10
ref|NP_273714.1| (NC_003112) tetraacyldisaccharide 4`-kinas... 65 7e-10
ref|NP_283663.1| (NC_003116) putative tetraacyldisaccharide... 65 1e-09
sp|P58186|LPXK_RICMO Tetraacyldisaccharide 4'-kinase (Lipid... 63 4e-09
ref|NP_360729.1| (NC_003103) tetraacyldisaccharide 4'-kinas... 62 8e-09
ref|NP_404989.1| (NC_003143) tetraacyldisaccharide 4'-kinas... 62 8e-09
sp|P58187|LPXK_RICRI Tetraacyldisaccharide 4'-kinase (Lipid... 62 8e-09
ref|NP_224725.1| (NC_000922) ATPase [Chlamydophila pneumoni... 61 1e-08
ref|NP_642409.1| (NC_003919) lipid A 4'-kinase [Xanthomonas... 61 1e-08
ref|NP_637480.1| (NC_003902) lipid A 4'-kinase [Xanthomonas... 58 1e-07
ref|NP_245797.1| (NC_002663) LpxK [Pasteurella multocida] >... 57 2e-07
ref|NP_298372.1| (NC_002488) lipid A 4'-kinase [Xylella fas... 56 5e-07
ref|NP_542006.1| (NC_003318) TETRAACYLDISACCHARIDE 4'-KINAS... 56 6e-07
ref|NP_108402.1| (NC_002678) tetraacyldisaccharide 4'-kinas... 56 6e-07
ref|NP_520651.1| (NC_003295) PROBABLE TETRAACYLDISACCHARIDE... 55 8e-07
sp|P58188|LPXK_RICTY Tetraacyldisaccharide 4'-kinase (Lipid... 53 5e-06
ref|NP_221074.1| (NC_000963) unknown [Rickettsia prowazekii... 53 5e-06
emb|CAD20229.1| (AJ426459) tetraacyldisaccharide 4'-kinase ... 52 1e-05
ref|NP_455472.1| (NC_003198) tetraacyldisaccharide 4'-kinas... 50 3e-05
ref|NP_459960.1| (NC_003197) tetraacyldisaccharide 4' kinas... 50 4e-05
ref|NP_286790.1| (NC_002655) putative EC 1.2 enzyme [Escher... 49 9e-05
ref|NP_415435.1| (NC_000913) putative EC 1.2 enzyme [Escher... 49 9e-05
dbj|BAA35659.1| (D90729) Hypothetical protein E (msbA 3' re... 49 9e-05
pir||S27999 hypothetical protein E (msbA 3' region) - Esche... 49 9e-05
ref|NP_419120.1| (NC_002696) tetraacyldisaccharide 4'-kinas... 48 1e-04
ref|NP_251671.1| (NC_002516) tetraacyldisaccharide 4*-kinas... 42 0.009
>ref|NP_207126.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O25095|LPXK_HELPY Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
pir||H64560 conserved hypothetical protein HP0328 - Helicobacter pylori
(strain 26695)
gb|AAD07395.1| (AE000550) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 312
Score = 615 bits (1585), Expect = e-175
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLI 60
MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLI
Sbjct: 1 MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLI 60
Query: 61 AGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALN 120
AGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALN
Sbjct: 61 AGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALN 120
Query: 121 LKQASVIVSEKRELGVLKALELGAKIVFLDDGFRFNFNQFNLLLKPKVPPYYPFCLPSGL 180
LKQASVIVSEKRELGVLKALELGAKIVFLDDGFRFNFNQFNLLLKPKVPPYYPFCLPSGL
Sbjct: 121 LKQASVIVSEKRELGVLKALELGAKIVFLDDGFRFNFNQFNLLLKPKVPPYYPFCLPSGL 180
Query: 181 YRESIKSYEEAHLVVTEDKDYQRITSISRPTKRMLLVTAIANPSRLDAFLPKEVVKKLYF 240
YRESIKSYEEAHLVVTEDKDYQRITSISRPTKRMLLVTAIANPSRLDAFLPKEVVKKLYF
Sbjct: 181 YRESIKSYEEAHLVVTEDKDYQRITSISRPTKRMLLVTAIANPSRLDAFLPKEVVKKLYF 240
Query: 241 KDHAPFNLELLEKEFYQNNATSLLVTSKDLVKLQDCNLPLSVLNLKLEICPKVLEEIDHY 300
KDHAPFNLELLEKEFYQNNATSLLVTSKDLVKLQDCNLPLSVLNLKLEICPKVLEEIDHY
Sbjct: 241 KDHAPFNLELLEKEFYQNNATSLLVTSKDLVKLQDCNLPLSVLNLKLEICPKVLEEIDHY 300
Query: 301 ILSYPYNTKERL 312
ILSYPYNTKERL
Sbjct: 301 ILSYPYNTKERL 312
>ref|NP_223030.1| (NC_000921) putative tetraacyldisaccharide-1-P 4'-kinase
[Helicobacter pylori J99]
sp|Q9ZMB1|LPXK_HELPJ Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
pir||H71948 probable tetraacyldisaccharide-1-p 4'-kinase - Helicobacter pylori
(strain J99)
gb|AAD05884.1| (AE001467) putative tetraacyldisaccharide-1-P 4'-kinase
[Helicobacter pylori J99]
Length = 312
Score = 580 bits (1494), Expect = e-165
Identities = 293/312 (93%), Positives = 303/312 (96%)
Query: 1 MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLI 60
MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQ IAT+KRKTAKKHDFKIPIISIGNLI
Sbjct: 1 MKSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQCIATIKRKTAKKHDFKIPIISIGNLI 60
Query: 61 AGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALN 120
AGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSVKGNILV QKTAGDEAYLLALN
Sbjct: 61 AGGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSVKGNILVPQKTAGDEAYLLALN 120
Query: 121 LKQASVIVSEKRELGVLKALELGAKIVFLDDGFRFNFNQFNLLLKPKVPPYYPFCLPSGL 180
LKQASVIVSEKRELGVLKALELG+KIVFLDDGFRFNFNQFN LLKPKVPPYYPFCLPSGL
Sbjct: 121 LKQASVIVSEKRELGVLKALELGSKIVFLDDGFRFNFNQFNALLKPKVPPYYPFCLPSGL 180
Query: 181 YRESIKSYEEAHLVVTEDKDYQRITSISRPTKRMLLVTAIANPSRLDAFLPKEVVKKLYF 240
YRE+IKSY+EAHLV+TEDKDYQRITSI+ PTKRMLLVTAIANPSRLDAFLPKEVVKKLYF
Sbjct: 181 YRENIKSYKEAHLVITEDKDYQRITSITNPTKRMLLVTAIANPSRLDAFLPKEVVKKLYF 240
Query: 241 KDHAPFNLELLEKEFYQNNATSLLVTSKDLVKLQDCNLPLSVLNLKLEICPKVLEEIDHY 300
+DHAPF+L+LLEKEFYQNNATSLLVTSKDLVKLQDC LPLSVL+LKLEICPKVLEEID Y
Sbjct: 241 RDHAPFDLKLLEKEFYQNNATSLLVTSKDLVKLQDCKLPLSVLDLKLEICPKVLEEIDRY 300
Query: 301 ILSYPYNTKERL 312
ILSYP N KE L
Sbjct: 301 ILSYPCNIKEHL 312
>ref|NP_281972.1| (NC_002163) putative tetraacyldisaccharide 4'-kinase [Campylobacter
jejuni]
sp|Q9PPA9|LPXK_CAMJE Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
pir||C81353 probable tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) Cj0811
[imported] - Campylobacter jejuni (strain NCTC 11168)
emb|CAB73076.1| (AL139076) putative tetraacyldisaccharide 4'-kinase [Campylobacter
jejuni]
Length = 308
Score = 201 bits (511), Expect = 9e-51
Identities = 126/306 (41%), Positives = 175/306 (57%), Gaps = 7/306 (2%)
Query: 2 KSDKPFLERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLIA 61
K+ + +L+ YF+ P QK L F L P S++Y A L KK FK P+IS+GNL
Sbjct: 5 KNYELWLDNYFFKPNFWQKCLAFILLPLSVLYAFFAILNTFFRKKIVFKKPVISVGNLSF 64
Query: 62 GGSGKTPFILEIAPRYQEVAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNL 121
GG+GKTP IA + V +V RGY+R SKGL VV + IL + +GDEA A
Sbjct: 65 GGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKNQNEILCTLTQSGDEAMEYAFEE 124
Query: 122 KQASVIVSEKRELGVLKALELGAKIVFLDDGF-RFNFNQFNLLLKPKVPPYYPFCLPSGL 180
VIVSE R G+ KA ELGAKIV LDD F +F+ +F++LL+ K+ PY+ F LPSG
Sbjct: 125 NIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFHIKKFDILLESKIKPYFNFTLPSGA 184
Query: 181 YRESIKSYEE-AHLVVTEDKDYQRITSISRPTKRMLLVTAIANPSRL-DAFLPKEVVKKL 238
YR K YE+ A + E +D+ R S + + +LVTAIA P RL + F+
Sbjct: 185 YRLP-KFYEKRADFIALEGRDFVRY-SFVKENPKAVLVTAIAKPFRLYEHFIKARAC--Y 240
Query: 239 YFKDHAPFNLELLEKEFYQNNATSLLVTSKDLVKLQDCNLPLSVLNLKLEICPKVLEEID 298
+FKDH F E LE ++N +L++T KD VK++D ++ L +E+ + E+I
Sbjct: 241 FFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVKDFGFKCQIIELNIELKDSLREKIK 300
Query: 299 HYILSY 304
YI +
Sbjct: 301 TYIKEF 306
>ref|NP_214138.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O67572|LPXK_AQUAE Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
pir||C70443 conserved hypothetical protein aq_1656 - Aquifex aeolicus
gb|AAC07542.1| (AE000749) hypothetical protein [Aquifex aeolicus]
Length = 315
Score = 117 bits (294), Expect = 1e-25
Identities = 99/298 (33%), Positives = 143/298 (47%), Gaps = 35/298 (11%)
Query: 25 ALYPFSLIYQGIATLKRKTAKKHDFKI-----PIISIGNLIAGGSGKTPFILEIAPRYQE 79
+L PFS +Y+ I + K KI P+IS+GNL GGSGKT F++ +A ++
Sbjct: 5 SLLPFSYLYEKIINFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKD 64
Query: 80 --VAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGVL 137
V ++SRGY+R SKG ++VS GN+ VS + AGDE YL+A L SV+ SE R G L
Sbjct: 65 KRVCILSRGYKRKSKGTLIVSEYGNLKVSWEEAGDEPYLMAKLLPHVSVVASEDRYKGGL 124
Query: 138 KALE-LGAKIVFLDDGFRFN--FNQFNLLLKPKVPPYYPFCLPSGLYRESIKSYEEAHLV 194
ALE L ++ LDDGF+ N+LL K LP+G RE +K A +
Sbjct: 125 LALEKLSPEVFILDDGFQHRKLHRDLNILLLKK-KDLKDRLLPAGNLREPLKEIRRADAL 183
Query: 195 VTEDKDYQRITSIS-RPTKRML-----LVTAIANPSRLDAFLPKEVVKKLYFKDHAPF-- 246
V ++ + + +PT +M L+ + D +EV+ D+ F
Sbjct: 184 VLTYQEVEPFEFFTGKPTFKMFREFCCLLNSDFEEVPFDILKEREVIAFSGLGDNGQFRK 243
Query: 247 ---NLELLEKEFYQ------------NNATSLLVTSKDLVKLQDCNLPLSVLNLKLEI 289
NL + KEF L T KDL+KLQ + LN K+++
Sbjct: 244 VLKNLGIKVKEFMSFPDHYDYSDFTPEEGEIYLTTPKDLIKLQGYE-NVFALNFKVKL 300
>ref|NP_662559.1| (NC_002932) tetraacyldisaccharide 4'-kinase [Chlorobium tepidum
TLS]
gb|AAM72901.1| (AE012922) tetraacyldisaccharide 4'-kinase [Chlorobium tepidum TLS]
Length = 358
Score = 92.4 bits (228), Expect = 6e-18
Identities = 69/233 (29%), Positives = 115/233 (48%), Gaps = 21/233 (9%)
Query: 14 DPTLLQKGLIFALYPFSLIYQGIATLKRKTAKKHDFK-----IPIISIGNLIAGGSGKTP 68
D T+ + L P + +Y + +L+ + FK IP++S+GN+ GG+GKTP
Sbjct: 6 DLTMHNRSAAILLRPAAALYGMVMSLRNCLYDQGIFKSWHSPIPVVSVGNITTGGTGKTP 65
Query: 69 FILEIAPRYQE----VAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQA 124
+ I Y+ A+VSRGY R +KG+ +VS G +L+ + AGDE +LA +
Sbjct: 66 LVDWIVKFYEASGIATAIVSRGYGRRTKGVQLVSDGGRLLLGSRDAGDETAMLAARNPRT 125
Query: 125 SVIVSEKRELGVLKALELGAK----IVFLDDGFRFNFNQFNL---LLKPKVPPYYPFCLP 177
V+V+EKR GV + A ++ LDD F+ +L ++ P LP
Sbjct: 126 IVVVAEKRVEGVQFLMHQFADRLPGVIVLDDAFQHRKIARDLDIVVVNAGAPEEIDAMLP 185
Query: 178 SGLYRESIKSYEEAHLV----VTEDKDYQRITSISRPTKRMLLVTAIANPSRL 226
+G RE ++ AHL+ +T+D + + R T + ++ + I P +L
Sbjct: 186 AGRLREPLRGLRRAHLIILGKITDDANSATLLQTLRETGKPVIRSKI-KPGKL 237
>ref|NP_604027.1| (NC_003454) Tetraacyldisaccharide 4'-kinase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL95326.1| (AE010618) Tetraacyldisaccharide 4'-kinase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 325
Score = 88.2 bits (217), Expect = 1e-16
Identities = 79/290 (27%), Positives = 141/290 (48%), Gaps = 53/290 (18%)
Query: 51 IPIISIGNLIAGGSGKTP----FILEIAPRYQEVAVVSRGYQ-RDSKGLVVVSVKGNILV 105
+ +I IGN+ GG+GKTP F+ ++ R ++VAVVSRGY+ + + ++VS I
Sbjct: 23 VEVICIGNVSVGGTGKTPAVHFFVKKLLARGRKVAVVSRGYRGKRKRDPLLVSDGMVIFA 82
Query: 106 SQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGAKIVFLDDGFRFN--FNQFNLL 163
+ + +GDE+YL A+NLK ++ +++ + + + LDDGF+ + +++
Sbjct: 83 TPQESGDESYLHAINLKVPVIVGADRYKACMFVKKHFDIDTIVLDDGFQHRKLYRDRDVV 142
Query: 164 LKPKVPPY-YPFCLPSGLYRESIKS--YEEAHLVVTED----------------KDYQRI 204
L P+ + LP GL RE K + ++T+ K + +
Sbjct: 143 LIDATNPFGGGYVLPRGLLREDFKRAVKRASEFIITKSDLVNERELKRIKNYFIKKFHKE 202
Query: 205 TSISR-------------------PTKRMLLVTAIANPSRLD---AFLPKEVVKKLYFKD 242
S+++ K++++ + +ANP + L +++L FKD
Sbjct: 203 VSVAKHGISKLCDLKGNMKPLFWVKAKKLMIFSGLANPLNFEKTVISLAPAYIERLDFKD 262
Query: 243 HAPF---NLELLEKEFYQNNATSLLVTSKDLVKLQDCNLPLSVLN-LKLE 288
H F ++ L+ K+ + +A +L T KDLVKL D NL +S L LK+E
Sbjct: 263 HHNFKTKDIALIRKKAEKMDADYILTTEKDLVKLPD-NLNISNLYVLKIE 311
>ref|NP_438232.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44491|LPXK_HAEIN Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
pir||G64141 hypothetical protein HI0059 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC21737.1| (U32691) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 332
Score = 74.7 bits (182), Expect = 1e-12
Identities = 83/287 (28%), Positives = 123/287 (41%), Gaps = 41/287 (14%)
Query: 22 LIFALYPFSLIYQGIATLKR---KTAKKHDFKIP--IISIGNLIAGGSGKTPFIL----E 72
LI+ L PFSL++ I+ L+R K ++ P +I +GNL GG+GKTP ++ E
Sbjct: 10 LIWLLSPFSLLFWLISQLRRALFSLGLKSSYRAPKPVIIVGNLSVGGNGKTPVVVWLMEE 69
Query: 73 IAPRYQEVAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKR 132
+ R V V+SRGY SK + K + GDE L+A A V++S R
Sbjct: 70 LKKRGLRVGVISRGYGSKSKTYPLFVTKNTNPIE---GGDEPVLIA-KRTNAPVVISPNR 125
Query: 133 ELGV-LKALELGAKIVFLDDGFRFNFNQFNL---LLKPKVPPYYPFCLPSGLYRESIKSY 188
+ + L + I+ DDG + Q +L ++ + F LP+G RE
Sbjct: 126 QQAIELLLSQAECDIIISDDGLQHYQLQRDLEIVVMDAERALGNGFVLPAGPLRELPSRL 185
Query: 189 EEAHLVVTEDKDYQRITSISR-----------PTKRML-------LVTAIANPSRLDAFL 230
+ V+T Q ++ R KR L + I NP R L
Sbjct: 186 KSVDFVITNGGKNQYSDAVMRLVPHFAINLKTNEKRQLNEFQSGVAIAGIGNPQRFFTML 245
Query: 231 PK---EVVKKLYFKDHAPFNLELLEKEFYQNNATSLLVTSKDLVKLQ 274
K ++ + F+DH F LEK +N L +T KD VK Q
Sbjct: 246 EKLGIQLKQTQAFQDHQHFEASQLEK-LAENQ--PLFMTEKDAVKCQ 289
>ref|NP_384918.1| (NC_003047) PUTATIVE TETRAACYLDISACCHARIDE 4'-KINASE PROTEIN
[Sinorhizobium meliloti]
sp|Q92RP7|LPXK_RHIME Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
emb|CAC45384.1| (AL591785) PUTATIVE TETRAACYLDISACCHARIDE 4'-KINASE PROTEIN
[Sinorhizobium meliloti]
Length = 346
Score = 72.0 bits (175), Expect = 8e-12
Identities = 47/135 (34%), Positives = 71/135 (51%), Gaps = 10/135 (7%)
Query: 24 FALYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTPFILEIA----PRYQE 79
+AL+PFS +Y IA ++ A++ +P+I IGN GG+GKTP + IA R +
Sbjct: 18 YALWPFSWVYGRIAGMRMDRARRATSAVPLICIGNFTVGGAGKTPTAIAIARAARARGLK 77
Query: 80 VAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGVLKA 139
A +SRGY VV + + + GDE LLA ++A ++ +R G K
Sbjct: 78 PAFLSRGYGGSLDVTTVVDPEHH---RARDVGDEPLLLA---REALTVICRRRVDGARKL 131
Query: 140 LELGAKIVFLDDGFR 154
GA I+ +DDGF+
Sbjct: 132 AAEGADIIIMDDGFQ 146
>ref|NP_353722.1| (NC_003062) AGR_C_1257p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_531397.1| (NC_003304) tetraacyldisaccharide 4'-kinase [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK86507.1| (AE008004) AGR_C_1257p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL41713.1| (AE009038) tetraacyldisaccharide 4'-kinase [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 348
Score = 72.0 bits (175), Expect = 8e-12
Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 10/133 (7%)
Query: 26 LYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTPFILEIA----PRYQEVA 81
L PFSL+Y +A + +TAK+ + +P+I IGN GG+GKTP + IA R +
Sbjct: 20 LSPFSLLYGKVAGRRMRTAKRANVPVPVICIGNFTVGGAGKTPTAIAIARAAVARGMKPG 79
Query: 82 VVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALE 141
+SRGY +V + + GDE LLA ++A ++S +R G + ++
Sbjct: 80 FLSRGYGGTLDVTTLVDAQHH---RAAAVGDEPLLLA---REAVTVISRRRVEGAHRLVK 133
Query: 142 LGAKIVFLDDGFR 154
G ++ +DDGF+
Sbjct: 134 EGVNLIIMDDGFQ 146
>sp|Q47909|LPXK_FRANO Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
gb|AAD15238.1| (L17003) valB gene product [Francisella tularensis subsp. novicida]
Length = 322
Score = 67.8 bits (164), Expect = 2e-10
Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 54/309 (17%)
Query: 11 YFYDPTLLQKGLIFALYPFSLIYQGIATLKR--KTAKKHDFKIPIISIGNLIAGGSGKTP 68
Y P LL + L P SL++ IA ++ + K++ KIPII +GN+ GG+GKTP
Sbjct: 7 YRSKPNLLSR----VLQPISLVFIDIANKRKIKQQLKQYKSKIPIIVVGNISVGGTGKTP 62
Query: 69 FILEIAPRY----QEVAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQA 124
+ +A +Y ++ A++SRGY + G + GDE +L L+
Sbjct: 63 VVRMLAQQYLAQGKKPAIISRGYGAKADNYPFEVTSGTLATQ---CGDEPAMLFDALQAQ 119
Query: 125 SVIVSEKRELGVLKALELG---AKIVFLDDGFRFN--FNQFNLLLKPKVPPY-YPFCLPS 178
IV + +K +E I+ DDG + +++ + + CLP+
Sbjct: 120 VPIVIAPERVQAVKYIEKNFPDTDIIISDDGLQHYKLARDKEIVVVDAIRMFGNKLCLPA 179
Query: 179 GLYRESIKSYEEAHLVVT----EDKDYQRITSISRPT----------------------- 211
G RE I+ +E ++ DKD + + + T
Sbjct: 180 GPLREPIERLKEVDQIIVIGNCSDKDKELLKNYKNVTYAKVVATEFVNILTAKKVAKTEF 239
Query: 212 --KRMLLVTAIANPSRLDAFLPKEVVK---KLYFKDHAPFNLELLEKEFYQNNATSLLVT 266
+ ++ + I NP++ L + + K FKDH F E ++ ++++T
Sbjct: 240 NHQNVIAIAGIGNPTKFFKTLEESAINITAKKVFKDHHKFTQSDFEG---IDSDITVVMT 296
Query: 267 SKDLVKLQD 275
KD +K ++
Sbjct: 297 YKDAIKCKN 305
>ref|NP_231511.1| (NC_002505) tetraacyldisaccharide 4`-kinase [Vibrio cholerae]
sp|Q9KQX0|LPXK_VIBCH Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
pir||C82146 probable tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) homolog
VC1877 [similarity] - Vibrio cholerae (group O1 strain
N16961)
gb|AAF95025.1| (AE004263) tetraacyldisaccharide 4`-kinase [Vibrio cholerae]
Length = 336
Score = 67.0 bits (162), Expect = 3e-10
Identities = 79/290 (27%), Positives = 123/290 (42%), Gaps = 45/290 (15%)
Query: 26 LYPFSLIYQGIATLKRK---TAKKHDFK--IPIISIGNLIAGGSGKTPFILEIAPRYQEV 80
L+PFS+++ I+ +RK T K ++ +P++ +GN+ AGG+GKTP ++ + Q +
Sbjct: 21 LWPFSVLFGVISRSRRKAYQTGDKPSYRAPLPVVVVGNITAGGNGKTPVVVWLVETLQNL 80
Query: 81 ----AVVSRGY--QRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKREL 134
VVSRGY + S LVV N + GDE L+ K A V V R
Sbjct: 81 GYRPGVVSRGYGAKAPSYPLVV-----NEQTPAQHCGDEPKLIFQRTK-APVAVDPVRSQ 134
Query: 135 GVLKALELGAKIVFLDDGFRFNFNQFNLLLKPKVPPYYPF----CLPSGLYRESIKSYEE 190
V LE G ++ DDG + Q ++ + V F +P G RE + +E
Sbjct: 135 AVKALLEHGVNVIVTDDGLQHYALQRDIEI-AVVDGVRRFGNQELIPLGPLREPVSRLDE 193
Query: 191 AHLVVTED--KDYQRITSISRPT----------------KRMLLVTAIANPSRLDAFLPK 232
++T I +PT R+ + I +PSR L +
Sbjct: 194 VDFIITNGGVAKANEIAMRLQPTDAVNLKTGERCAVSKLTRLCAMAGIGHPSRFFNTLRE 253
Query: 233 ---EVVKKLYFKDHAPFNLELLEKEFYQNNATSLLVTSKDLVKLQDCNLP 279
++V F DH F+ L + Q L++T KD VK + P
Sbjct: 254 LNADLVHCQGFADHQAFDAAQLNQLAQQ--GAHLIMTEKDAVKCAEFAQP 301
>ref|NP_219912.1| (NC_000117) probable tetraacyldisaccharide 4' kinase [Chlamydia
trachomatis]
pir||E71519 probable ATPase - Chlamydia trachomatis (serotype D, strain UW3/Cx)
gb|AAC67999.1| (AE001313) probable tetraacyldisaccharide 4' kinase [Chlamydia
trachomatis]
Length = 419
Score = 66.2 bits (160), Expect = 4e-10
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 32 IYQGIATLKRKTAKK-HDFKIPIISIGNLIAGGSGKTPFILEIAPRYQE----VAVVSRG 86
++ G L+ K AK H + ++S+GN++ GG+GKTP +L +A E AV+SRG
Sbjct: 89 VFSGSVWLRHKIAKSPHQVQATVVSVGNIVVGGTGKTPLVLWLAQALHERGLSCAVLSRG 148
Query: 87 YQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGAKI 146
Y+ ++ L + GDE LLA L +V + + R+ K+ +
Sbjct: 149 YKGKYSKKKAFTIVNPALHTASCVGDEPLLLAKYLPSGTVRIQKDRKTLAEKSAG-DFDV 207
Query: 147 VFLDDGFRFN 156
+ LDDGF++N
Sbjct: 208 LLLDDGFQYN 217
>sp|O84407|LPXK_CHLTR Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
Length = 369
Score = 66.2 bits (160), Expect = 4e-10
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 6/130 (4%)
Query: 32 IYQGIATLKRKTAKK-HDFKIPIISIGNLIAGGSGKTPFILEIAPRYQE----VAVVSRG 86
++ G L+ K AK H + ++S+GN++ GG+GKTP +L +A E AV+SRG
Sbjct: 39 VFSGSVWLRHKIAKSPHQVQATVVSVGNIVVGGTGKTPLVLWLAQALHERGLSCAVLSRG 98
Query: 87 YQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGAKI 146
Y+ ++ L + GDE LLA L +V + + R+ K+ +
Sbjct: 99 YKGKYSKKKAFTIVNPALHTASCVGDEPLLLAKYLPSGTVRIQKDRKTLAEKSAG-DFDV 157
Query: 147 VFLDDGFRFN 156
+ LDDGF++N
Sbjct: 158 LLLDDGFQYN 167
>ref|NP_297056.1| (NC_002620) tetraacyldisaccharide 4`-kinase [Chlamydia muridarum]
sp|Q9PJZ4|LPXK_CHLMU Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
pir||E81675 tetraacyldisaccharide 4'-kinase TC0682 [imported] - Chlamydia
muridarum (strain Nigg)
gb|AAF39500.1| (AE002337) tetraacyldisaccharide 4`-kinase [Chlamydia muridarum]
Length = 369
Score = 65.9 bits (159), Expect = 6e-10
Identities = 74/305 (24%), Positives = 128/305 (41%), Gaps = 52/305 (17%)
Query: 32 IYQGIATLKRKTAKK-HDFKIPIISIGNLIAGGSGKTPFILEIAPRYQE----VAVVSRG 86
++ G L+ K AK H + ++S+GN++ GG+GKTP +L +A E AV+SRG
Sbjct: 39 VFSGSVWLRYKIAKPPHQVQATVVSVGNIVVGGTGKTPLVLWLAQALNERGISCAVLSRG 98
Query: 87 YQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGA-K 145
Y+ ++ L + GDE LLA +L +V + + R+ L GA
Sbjct: 99 YKGKCSQRKSFTIVDPALHTAACVGDEPLLLAKHLPAGTVRIQKDRK--ALAEKSAGAFD 156
Query: 146 IVFLDDGFRFN--FNQFNLLLKPKVPPYYPFC-LPSGLYRESIKSYEEAHLVVTEDK--- 199
++ LDDGF+ N ++L P+ P G R+ + +A+ V+ K
Sbjct: 157 VLLLDDGFQCNRLHKDVEIVLVNGSDPFGGRAFFPKGRLRDFPERLAKANYVIVNGKCSP 216
Query: 200 DYQRITSISRPTKRMLLVTAIANPSRLD--AFLPKE------------------------ 233
QR + P ++L+ I+ L+ A +P++
Sbjct: 217 SDQRELDLLNPAAKILVEPQISEIVWLNKSANMPRDHWEGLGVGVFCGLGFPKGFLTMLR 276
Query: 234 -----VVKKLYFKDHAPF---NLELLEKEFYQNNATSLLVTSKDLVKL----QDCNLPLS 281
V+ DH+ LEL K+ +L T KD VK+ ++ +LP+
Sbjct: 277 NAGIHVLGTHLLPDHSGITKQELELFCKKIILRQGVGILCTEKDSVKIEAFAEEMSLPIG 336
Query: 282 VLNLK 286
+ ++
Sbjct: 337 EVRMR 341
>ref|NP_273714.1| (NC_003112) tetraacyldisaccharide 4`-kinase [Neisseria meningitidis
MC58]
sp|Q9K0D7|LPXK_NEIMB Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
pir||F81170 tetraacyldisaccharide 4'-kinase NMB0672 [imported] - Neisseria
meningitidis (group B strain MD58)
gb|AAF41090.1| (AE002422) tetraacyldisaccharide 4`-kinase [Neisseria meningitidis
MC58]
Length = 344
Score = 65.5 bits (158), Expect = 7e-10
Identities = 80/317 (25%), Positives = 133/317 (41%), Gaps = 67/317 (21%)
Query: 8 LERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRK---TAKKHDFK--IPIISIGNLIAG 62
+ER++ P + L F L P S ++ IA +R + K+ K +P++ +GN+ AG
Sbjct: 11 IERHWQKPYPV---LSFLLKPLSGLFAKIAAKRRTDFLSGKRQSEKLPVPVVVVGNIHAG 67
Query: 63 GSGKTPFILEIAPRYQE----VAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLA 118
G+GKTP + + QE V ++SRGY R SK + V++ + + AGDE LL
Sbjct: 68 GTGKTPIVAALVSGLQEKGVKVGIISRGYGRKSKAVHVLNAESR----AEDAGDEPLLLF 123
Query: 119 LNLKQASVIVSEKRELG-VLKALELGAKIVFLDDGFRFNFNQFNLLLKPKVPPYYPFC-- 175
+ + S + E G L A ++ DDG Q L + +P
Sbjct: 124 RKTGAPTAVGSSRAEAGRALLAAHPDIGLIVADDGL-----QHYALRRDVEIAVFPAADT 178
Query: 176 -------LPSGLYRESIKSYEEAHLVV------------TEDKDYQRITS-----ISRPT 211
LP+G RE + + VV +E+ + RI + ++ P+
Sbjct: 179 GRTDLDLLPNGSLREPLLRLDSVDAVVVSGGKADALFRPSENMFHSRIEAGRIYRLNNPS 238
Query: 212 ----------KRMLLVTAIANPSRLDAFLPK---EVVKKLYFKDHAPFNLELLEKEFYQN 258
+ ++ V IA P+R L V + + DHA + L
Sbjct: 239 EILDTGRLKNQTVVAVAGIAKPARFFDSLRNMGITVKRTVALPDHADISAADLP------ 292
Query: 259 NATSLLVTSKDLVKLQD 275
+A ++++T KD VK D
Sbjct: 293 DADAVIITEKDAVKFSD 309
>ref|NP_283663.1| (NC_003116) putative tetraacyldisaccharide kinase [Neisseria
meningitidis Z2491]
sp|Q9JVE4|LPXK_NEIMA Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
pir||C81933 probable tetraacyldisaccharide kinase NMA0872 [imported] -
Neisseria meningitidis (group A strain Z2491)
emb|CAB84152.1| (AL162754) putative tetraacyldisaccharide kinase [Neisseria
meningitidis Z2491]
Length = 344
Score = 65.1 bits (157), Expect = 1e-09
Identities = 80/317 (25%), Positives = 133/317 (41%), Gaps = 67/317 (21%)
Query: 8 LERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRK---TAKKHDFK--IPIISIGNLIAG 62
+ER++ P + L F L P S ++ IA +R + K+ K +P++ +GN+ AG
Sbjct: 11 IERHWQKPYPV---LSFLLKPLSGLFAKIAAKRRTDFLSGKRQSEKLPVPVVVVGNIHAG 67
Query: 63 GSGKTPFILEIAPRYQE----VAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLA 118
G+GKTP + + QE V ++SRGY R SK + V++ + + AGDE LL
Sbjct: 68 GTGKTPIVAALVSGLQEKGVKVGIISRGYGRKSKAVHVLNAESR----AEDAGDEPLLLF 123
Query: 119 LNLKQASVIVSEKRELG-VLKALELGAKIVFLDDGFRFNFNQFNLLLKPKVPPYYPFC-- 175
+ + S + E G L A ++ DDG Q L + +P
Sbjct: 124 RKTGAPTAVGSSRAEAGRALLAAHPDIGLIVADDGL-----QHYALRRDVEIAVFPAADT 178
Query: 176 -------LPSGLYRESIKSYEEAHLVV------------TEDKDYQRITS-----ISRPT 211
LP+G RE + + VV +E+ + RI + ++ P+
Sbjct: 179 GRTDLDLLPNGNLREPLLRLDSVDAVVVSGGKADALFRPSENMFHSRIEAGRIYRLNNPS 238
Query: 212 ----------KRMLLVTAIANPSRLDAFLPK---EVVKKLYFKDHAPFNLELLEKEFYQN 258
+ ++ V IA P+R L V + + DHA + L
Sbjct: 239 EILDTGRLKNQTVVAVAGIAKPARFFDSLRNMGITVKRTVALPDHADISAADLP------ 292
Query: 259 NATSLLVTSKDLVKLQD 275
+A ++++T KD VK D
Sbjct: 293 DADAVIITEKDAVKFSD 309
>sp|P58186|LPXK_RICMO Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
emb|CAC33651.1| (AJ293330) Tetraacyldisaccharide 4'-kinase [Rickettsia montanensis]
Length = 325
Score = 63.2 bits (152), Expect = 4e-09
Identities = 84/317 (26%), Positives = 129/317 (40%), Gaps = 43/317 (13%)
Query: 15 PTLLQKGLIFA--LYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTPFILE 72
P QK I A L P SLIYQ + L+ A+ +I +GN GG+GKT ++
Sbjct: 7 PEFWQKRNIIAYLLLPISLIYQFLGYLRASLARPIMLPAKVICVGNCSVGGTGKTQIVMY 66
Query: 73 IA----PRYQEVAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIV 128
+A R +V++ Y + K + L AGDE +LA K +VI
Sbjct: 67 LAKLLKARNVSFVIVTKAYGSNLKSATTIHQGHTAL----EAGDEGVILA---KYGAVIA 119
Query: 129 SEKRELGVLKALELGAKIVFLDDGFR--FNFNQFNLLLKPKVPPY-YPFCLPSGLYRE-S 184
++ + V EL + +DD + + F ++ + F +P+G R+
Sbjct: 120 TKSIKEIVPLINELKPDTIIVDDFLQNPYFHKDFTIVSVDSQRLFGNGFLIPAGPLRQYP 179
Query: 185 IKSYEEAHLVVTEDKDYQRITSISRP------------------TKRMLLVTAIANPSRL 226
K + A L+ +I +I P TK + I NP R
Sbjct: 180 NKVLDAADLIFLVSSHQDKIPNILTPYVNKLINAQIVPANNIDKTKNYFAFSGIGNPERF 239
Query: 227 DAFLPK---EVVKKLYFKDHAPF---NLELLEKEFYQNNATSLLVTSKDLVKLQDCNLPL 280
A L + F DH + +LE L ++NAT L+ T KD VK D N +
Sbjct: 240 FATLKNYGLNITGYKIFPDHYNYLQADLENLYSLAKEHNAT-LVTTRKDHVKFNDLNNNI 298
Query: 281 SVLNLKLEI-CPKVLEE 296
L+++L I P +L E
Sbjct: 299 VCLDVELSINNPDLLNE 315
>ref|NP_360729.1| (NC_003103) tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
[Rickettsia conorii]
sp|Q92GN1|LPXK_RICCN Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
gb|AAL03630.1| (AE008660) tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
[Rickettsia conorii]
Length = 321
Score = 62.0 bits (149), Expect = 8e-09
Identities = 82/317 (25%), Positives = 130/317 (40%), Gaps = 43/317 (13%)
Query: 15 PTLLQKGLIFA--LYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTPFILE 72
P QK I A L P S+IY+ + L+ A+ +I +GN GG+GKT ++
Sbjct: 7 PEFWQKRNIIAYLLLPISVIYKFLGYLRASLARPIMLPAKVICVGNCSVGGTGKTQIVMY 66
Query: 73 IA----PRYQEVAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIV 128
+A R +V++ Y + K + L GDE +LA K +VI
Sbjct: 67 LAKLLKSRNVSFVIVTKAYGSNLKSATTIHQGHTAL----EVGDEGVILA---KYGAVIA 119
Query: 129 SEKRELGVLKALELGAKIVFLDDGFR--FNFNQFNLLLKPKVPPY-YPFCLPSGLYRE-S 184
++ + V EL I+ +DD + + F ++ + F +P+G R+
Sbjct: 120 TKNIKEIVPLLNELKPDIIIVDDFLQNPYFHKDFTIVSVDSQRLFGNGFLIPAGPLRQYP 179
Query: 185 IKSYEEAHLVVTEDKDYQRITSISRP------------------TKRMLLVTAIANPSRL 226
K+ + A L+ +I +I P TK + I NP R
Sbjct: 180 NKALDAADLIFLVSSHQDKIPNILTPYVNKLINAQIVPSNNIDKTKNYFAFSGIGNPERF 239
Query: 227 DAFLPK---EVVKKLYFKDHAPF---NLELLEKEFYQNNATSLLVTSKDLVKLQDCNLPL 280
A L + F DH + +LE L ++NAT L+ T KD VK D N +
Sbjct: 240 FATLKNYGLNITGYKIFPDHYNYLQADLENLYSLAKEHNAT-LVTTRKDHVKFNDLNNNI 298
Query: 281 SVLNLKLEI-CPKVLEE 296
L+++L I P +L E
Sbjct: 299 VCLDVELSINHPDLLNE 315
>ref|NP_404989.1| (NC_003143) tetraacyldisaccharide 4'-kinase [Yersinia pestis]
sp|Q8ZGA8|LPXK_YERPE Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
emb|CAC90225.1| (AJ414148) tetraacyldisaccharide 4'-kinase [Yersinia pestis]
Length = 328
Score = 62.0 bits (149), Expect = 8e-09
Identities = 81/295 (27%), Positives = 128/295 (42%), Gaps = 40/295 (13%)
Query: 19 QKGLIFALYPFSLIYQGIATLKRKTAK-----KHDFKIPIISIGNLIAGGSGKTPFILEI 73
Q L L P S +Y + L R + + +P+I +GNL AGG+GKTP ++ +
Sbjct: 9 QSRLYLLLLPLSWLYGAVTWLIRASYRLGLRSAWRSPVPVIIVGNLTAGGNGKTPVVIWL 68
Query: 74 APRYQE----VAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVS 129
+ Q+ V VVSRGY S + + + N +Q AGDE L+ A V VS
Sbjct: 69 VEQLQQRGYRVGVVSRGYGGKS-AVYPLLLSDNTTTAQ--AGDEPVLI-FQRTGAPVAVS 124
Query: 130 EKRELGVLKALELGA-KIVFLDDGFRFNFNQ--FNLLLKPKVPPY-YPFCLPSGLYRE-- 183
KR + L+ A + DDG + Q F L++ V + + LP+G RE
Sbjct: 125 PKRADAIKALLQSHAVDFIITDDGLQHYALQRDFELVVIDGVRRFGNGWWLPAGPMRERE 184
Query: 184 -------------SIKSYEEAHLVVTEDKDYQRITSISRPTKRMLLVTAIA---NPSRLD 227
+ + E + + + +T +P +++ V A+A +P R
Sbjct: 185 GRLRSVDAAITNGGLAAEGEIPMQLVAREAVNLVTGQRQPAEQLQHVVAMAGIGHPPRFF 244
Query: 228 AFLPKEVVK---KLYFKDHAPFNLELLEKEFYQNNATSLLVTSKDLVKLQDCNLP 279
A L +K + F DH ++L L + + LL+T KD VK + LP
Sbjct: 245 ATLNLLGIKPENEHAFADHQDYSLAQLSR--LTSGPQILLMTEKDAVKCRAFALP 297
>sp|P58187|LPXK_RICRI Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
emb|CAC33716.1| (AJ293329) Tetraacyldisaccharide 4'-kinase [Rickettsia rickettsii]
Length = 321
Score = 62.0 bits (149), Expect = 8e-09
Identities = 83/317 (26%), Positives = 128/317 (40%), Gaps = 43/317 (13%)
Query: 15 PTLLQKGLIFA--LYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTPFILE 72
P QK I A L P SLIYQ + L+ A+ +I +GN GG+GKT ++
Sbjct: 7 PEFWQKRNIIAYLLLPISLIYQFLGYLRASLARPIMLPAKVICVGNCSVGGTGKTQIVMY 66
Query: 73 IA----PRYQEVAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIV 128
+A R +V++ Y + K + L GDE +LA K +VI
Sbjct: 67 LAKLLKARNVSFVIVTKAYGSNLKSATTIHQGHTAL----EVGDEGVILA---KYGAVIA 119
Query: 129 SEKRELGVLKALELGAKIVFLDDGFR--FNFNQFNLLLKPKVPPY-YPFCLPSGLYRE-S 184
++ + V EL I+ +DD + + F ++ + F +P+G R+
Sbjct: 120 TKNIKEIVPLINELKPDIIIVDDFLQNPYFHKDFTIVSVDSQRLFGNGFLIPAGPLRQYP 179
Query: 185 IKSYEEAHLVVTEDKDYQRITSISRP------------------TKRMLLVTAIANPSRL 226
K+ + A L+ +I I P TK + I NP R
Sbjct: 180 NKALDAADLIFLVSSHQDKIPQILTPYVNKLINAQIVPSNNIDKTKNYFAFSGIGNPERF 239
Query: 227 DAFLPK---EVVKKLYFKDHAPF---NLELLEKEFYQNNATSLLVTSKDLVKLQDCNLPL 280
A L + F DH + +LE L ++NA L+ T KD VK D N +
Sbjct: 240 FATLKNYGLNITGYKIFPDHYNYLQADLENLYSLAKEHNAI-LVTTRKDHVKFNDLNNNI 298
Query: 281 SVLNLKLEI-CPKVLEE 296
L+++L I P +L E
Sbjct: 299 VCLDVELSINHPDLLNE 315
>ref|NP_224725.1| (NC_000922) ATPase [Chlamydophila pneumoniae CWL029]
ref|NP_300584.1| (NC_002491) ATPase [Chlamydophila pneumoniae J138]
ref|NP_444774.1| (NC_002179) tetraacyldisaccharide 4`-kinase [Chlamydophila
pneumoniae AR39]
sp|Q9Z823|LPXK_CHLPN Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
pir||H72068 tetraacyldisaccharide 4'-kinase CP0223 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
gb|AAD18669.1| (AE001637) ATPase [Chlamydophila pneumoniae CWL029]
gb|AAF38091.1| (AE002183) tetraacyldisaccharide 4`-kinase [Chlamydophila
pneumoniae AR39]
dbj|BAA98735.1| (AP002547) ATPase [Chlamydophila pneumoniae J138]
Length = 365
Score = 61.2 bits (147), Expect = 1e-08
Identities = 38/107 (35%), Positives = 59/107 (54%), Gaps = 5/107 (4%)
Query: 53 IISIGNLIAGGSGKTPFILEIAP----RYQEVAVVSRGYQRDSKGLVVVSVKGNILVSQK 108
+IS+GN++ GG+GKTP +L +A R V+SRGY+ S ++V + + S
Sbjct: 61 VISVGNIVVGGAGKTPTVLWLAEALRLRGYSCGVLSRGYKSQSSRQKKLTVVDSKVHSAS 120
Query: 109 TAGDEAYLLALNLKQASVIVSEKRELGVLKALELGAKIVFLDDGFRF 155
GDE L+A L + SV V + R + +A E I+ LDDG ++
Sbjct: 121 YVGDEPLLMAEKLPEGSVWVHKDRRISAARAAEKFG-ILLLDDGLQY 166
>ref|NP_642409.1| (NC_003919) lipid A 4'-kinase [Xanthomonas axonopodis pv. citri
str. 306]
gb|AAM36945.1| (AE011844) lipid A 4'-kinase [Xanthomonas axonopodis pv. citri str.
306]
Length = 345
Score = 61.2 bits (147), Expect = 1e-08
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 11 YFYD--PTLLQKGLIFALYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTP 68
Y+YD P L ++ +Y ++ + A +R ++H +P+I +GN+ AGG+GKTP
Sbjct: 11 YWYDNTPIPLPARILAPVYGAAIALRR-ALYRRGWRRRHGVPVPVIVVGNVTAGGTGKTP 69
Query: 69 FILEIAPRYQEV----AVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQA 124
+ + + QE V SRGY RD G V+ + V+ GDE L+A A
Sbjct: 70 LTIALVAKLQEAGWTPGVASRGYGRDDAG-TARWVEADTPVA--LGGDEPVLIAWK-TGA 125
Query: 125 SVIVSEKRELGVLKALELGAKIVFLDDGFR 154
V V R +E G IV DDG +
Sbjct: 126 RVRVDSDRLAAARALVEAGCDIVICDDGLQ 155
>ref|NP_637480.1| (NC_003902) lipid A 4'-kinase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gb|AAM41404.1| (AE012319) lipid A 4'-kinase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
Length = 351
Score = 58.2 bits (139), Expect = 1e-07
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 40 KRKTAKKHDFKIPIISIGNLIAGGSGKTPFILEIAPRYQEV----AVVSRGYQRDSKGLV 95
+R K+H +P++ IGN+ AGG+GKTP + + R Q+ V SRGY RD G
Sbjct: 41 RRGWLKRHGVPVPVVVIGNVTAGGTGKTPLTITLVSRLQQAGWTPGVASRGYGRDDAG-T 99
Query: 96 VVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGAKIVFLDDGFR 154
V + V+ GDE L+A A V V R +E G I+ DDG +
Sbjct: 100 ARWVDADTPVA--LGGDEPVLIAWK-TGARVRVDTDRLAAARALVEAGCDIIVCDDGLQ 155
>ref|NP_245797.1| (NC_002663) LpxK [Pasteurella multocida]
sp|Q9CMG8|LPXK_PASMU Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
gb|AAK02944.1| (AE006124) LpxK [Pasteurella multocida]
Length = 325
Score = 57.4 bits (137), Expect = 2e-07
Identities = 68/287 (23%), Positives = 120/287 (41%), Gaps = 44/287 (15%)
Query: 22 LIFALYPFSLIYQGIATLKRKTAKKHDFK-----IPIISIGNLIAGGSGKTPFILEIAPR 76
+ + + P S ++ I+T ++ +K F +P+I +GNL GG+GKTP ++ + +
Sbjct: 10 ITWLMLPLSFLFWLISTCRQFLFRKGIFASYRAPVPVIVVGNLSVGGNGKTPVVIWLVKQ 69
Query: 77 YQE----VAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKR 132
Q+ V V+SRGY S ++ + GDE L+A Q V +S R
Sbjct: 70 LQQKGLKVGVISRGYGSQSSVYPLLVTPDTDPIQ---GGDEPVLIA-KRTQVPVCISANR 125
Query: 133 E--LGVLKALELGAKIVFLDDG---FRFNFNQFNLLLKPKVPPYYPFCLPSGLYRE---- 183
+ + +L + ++ DDG +R + ++L + F LP+G RE
Sbjct: 126 QHAIELLLQHQPDCDLIISDDGLQHYRLQRDFEIVVLDVQRGFGNGFLLPAGPLRELPSR 185
Query: 184 -----------SIKSYEEAHLVVTEDKDYQRITSISR---PTKRMLLVTAIANPSRLDAF 229
Y + + + +T SR R+ + I +P R +
Sbjct: 186 LNTVDLIICHGQASKYSDVEMTLVPHHAINLVTGESRLLSDFHRVSAIAGIGHPQRFFSM 245
Query: 230 LPK---EVVKKLYFKDHAPFNLELLEKEFYQNNATS-LLVTSKDLVK 272
L ++++ F+DH F +F + T LL+T KD VK
Sbjct: 246 LENLSMQLIQTKAFQDHQTFE----AAQFVDFDQTQPLLMTEKDAVK 288
>ref|NP_298372.1| (NC_002488) lipid A 4'-kinase [Xylella fastidiosa 9a5c]
sp|Q9PEE6|LPXK_XYLFA Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
pir||G82726 lipid A 4'-kinase XF1082 [imported] - Xylella fastidiosa (strain
9a5c)
gb|AAF83892.1|AE003944_9 (AE003944) lipid A 4'-kinase [Xylella fastidiosa 9a5c]
Length = 339
Score = 56.2 bits (134), Expect = 5e-07
Identities = 47/159 (29%), Positives = 72/159 (44%), Gaps = 19/159 (11%)
Query: 6 PFLERYFYDPTLLQKGLIFALYPFSLIYQGIATLKRKT-----AKKHDFKIPIISIGNLI 60
P + Y+Y + + F +IY G +L+R +++ +P++ IGNL+
Sbjct: 7 PRIPEYWYGQVPVPPFMRF----MEVIYAGAVSLRRLAYRRGWRRRYGVAVPVVVIGNLV 62
Query: 61 AGGSGKTPFILEIAPRYQEV----AVVSRGY-QRDSKGLVVVSVKGNILVSQKTAGDEAY 115
AGG+GKTP +EI R +E + SRGY +RD K + I + AGDE
Sbjct: 63 AGGTGKTPLTIEIVARLREAGWTPGIASRGYGRRDPKTPRWIQPDTPI----ELAGDEPA 118
Query: 116 LLALNLKQASVIVSEKRELGVLKALELGAKIVFLDDGFR 154
++A V V R + G IV DDG +
Sbjct: 119 MIAWKTGM-RVRVDVDRSAAARALVAEGCDIVVCDDGLQ 156
>ref|NP_542006.1| (NC_003318) TETRAACYLDISACCHARIDE 4'-KINASE [Brucella melitensis]
sp|Q8YB72|LPXK_BRUME Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
gb|AAL54270.1| (AE009735) TETRAACYLDISACCHARIDE 4'-KINASE [Brucella melitensis]
Length = 341
Score = 55.8 bits (133), Expect = 6e-07
Identities = 41/134 (30%), Positives = 63/134 (46%), Gaps = 10/134 (7%)
Query: 25 ALYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTPFILEIA----PRYQEV 80
AL P + IY ++ + A +P++ +GN GG+GKTP + A R +
Sbjct: 19 ALAPAAWIYGRVSGRRLIRAVPPRVSLPVLCVGNFTVGGAGKTPTAIAFARGAIARGMKP 78
Query: 81 AVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGVLKAL 140
+VSRGY + GL +V + + GDE LLA + A+V +S R
Sbjct: 79 GIVSRGYGGNYSGLHLVDPGHD---GARHVGDEPLLLA---RHAAVALSPDRVKAAEYLK 132
Query: 141 ELGAKIVFLDDGFR 154
LG + +DDGF+
Sbjct: 133 SLGCDFIIMDDGFQ 146
>ref|NP_108402.1| (NC_002678) tetraacyldisaccharide 4'-kinase [Mesorhizobium loti]
sp|P58185|LPXK_RHILO Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
dbj|BAB53863.1| (AP003013) tetraacyldisaccharide 4'-kinase [Mesorhizobium loti]
Length = 341
Score = 55.8 bits (133), Expect = 6e-07
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 23 IFALYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTPFILEIAPRYQEVAV 82
+ AL P S +Y +A + A++ + P++ +GN GG+GKTP + +A + + + +
Sbjct: 17 VLALSPLSAVYALVAGRVMRRARREKIEAPVLCVGNFTVGGTGKTPVAIALAQQAKRMQL 76
Query: 83 ----VSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGV-L 137
+SRG+ VV + + K GDE LLA + A V V+ R G L
Sbjct: 77 KPGFLSRGHGGSFAEPHVVDAHHD---AAKHVGDEPLLLA---EHAPVAVTPNRAAGARL 130
Query: 138 KALELGAKIVFLDDGFR 154
+ G + +DDGF+
Sbjct: 131 LMAKHGCDFLIMDDGFQ 147
>ref|NP_520651.1| (NC_003295) PROBABLE TETRAACYLDISACCHARIDE 4'-KINASE PROTEIN
[Ralstonia solanacearum]
sp|Q8XWE4|LPXK_RALSO Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
emb|CAD16237.1| (AL646070) PROBABLE TETRAACYLDISACCHARIDE 4'-KINASE PROTEIN
[Ralstonia solanacearum]
Length = 349
Score = 55.5 bits (132), Expect = 8e-07
Identities = 72/293 (24%), Positives = 115/293 (38%), Gaps = 59/293 (20%)
Query: 26 LYPFSLIYQGIATLKRKT-----AKKHDFKIPIISIGNLIAGGSGKTPFILEIAPRYQEV 80
L+P SL++ ++ L+R+ + +P++ +GN+ GG+GKTP ++ +A +
Sbjct: 26 LWPLSLLFGAVSGLRRRLFRWGWLRSVRLPVPVVVVGNVTVGGAGKTPAVIALASALADA 85
Query: 81 ----AVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKREL-- 134
+VSRGY K V + GDE L+A V V R L
Sbjct: 86 GLRPGIVSRGYGAQLKHPRPVREHSR----AEDVGDEPLLIA-RATDLPVWVYPDRVLCA 140
Query: 135 GVLKALELGAKIVFLDDGFRFNFNQFNLLLKPKVPPY------YPFCLPSGLYRESIKSY 188
L A G ++ DDG + + L ++ + F LP+G RE +
Sbjct: 141 QTLLASHPGCNVIVCDDGLQ----HYRLRRDIEIVVFDLRMGGNGFLLPAGPLREPMTRR 196
Query: 189 EEAHLV------VTEDK--------DYQRITSISRPTKR-------------MLLVTAIA 221
+A L+ T D+ D Q +++ P R +L I
Sbjct: 197 RDATLINDPNYRATHDRPDIYGMRLDLQDAYNLADPALRRPLSQFARLSGDQLLAAAGIG 256
Query: 222 NPSRLDAFLPKEVVK--KLYFKDHAPFNLELLEKEFYQNNATSLLVTSKDLVK 272
NP R A L ++ L DH F + F A ++L+T KD VK
Sbjct: 257 NPERFFASLRAAGLQPATLPLPDHYDF----ADNPFADAGAETILITEKDAVK 305
>sp|P58188|LPXK_RICTY Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
emb|CAC33763.1| (AJ293328) Tetraacyldisaccharide 4'-kinase [Rickettsia typhi]
Length = 321
Score = 52.8 bits (125), Expect = 5e-06
Identities = 71/309 (22%), Positives = 125/309 (39%), Gaps = 43/309 (13%)
Query: 22 LIFALYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTPFILEIA----PRY 77
+ + L P SLIYQ ++ L+ A +I +GN GG+GKT ++ +A +
Sbjct: 16 IAYLLLPISLIYQFLSYLRTSLACPVILPAKVICVGNCSVGGTGKTQIVIYLAKLLKAKN 75
Query: 78 QEVAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGVL 137
++++ Y + K ++ L GDE +LA + ++ K +L
Sbjct: 76 VSFVIITKAYGSNIKSTTIIQKWHTAL----EVGDEGIMLA----KYGTAIAAKHIKDIL 127
Query: 138 KAL-ELGAKIVFLDDGFR--FNFNQFNLLLKPKVPPY-YPFCLPSGLYRESIKS-YEEAH 192
+ EL ++ +DD + + F ++ + F +P+G R++ K + A
Sbjct: 128 PLINELKPDVIIVDDFLQNPYLHKDFTIVSVDSQRLFGNRFLIPAGPLRQNPKQVLDAAD 187
Query: 193 LVVTEDKDYQRITSISRP------------------TKRMLLVTAIANPSRLDAFLPK-- 232
L+ + +I + P TK + I NP R L
Sbjct: 188 LIFLVSSNQDQIPNELTPYIDKVINAQIVPSNNIDKTKNYFAFSGIGNPQRFFLTLENYR 247
Query: 233 -EVVKKLYFKDHAPF---NLELLEKEFYQNNATSLLVTSKDLVKLQDCNLPLSVLNLKLE 288
+V F DH + +LE L ++NA L+ T KD VK N + L+++L
Sbjct: 248 LNIVGHKTFPDHYNYLQADLENLYSLAKEHNAI-LITTRKDYVKFNYLNNKIICLDVELS 306
Query: 289 I-CPKVLEE 296
I P +L E
Sbjct: 307 INNPDLLNE 315
>ref|NP_221074.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZCL0|LPXK_RICPR Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
pir||F71631 hypothetical protein RP719 - Rickettsia prowazekii
emb|CAA15150.1| (AJ235273) unknown [Rickettsia prowazekii]
Length = 325
Score = 52.8 bits (125), Expect = 5e-06
Identities = 71/309 (22%), Positives = 127/309 (40%), Gaps = 43/309 (13%)
Query: 22 LIFALYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTPFILEIA----PRY 77
+ + L P SLIYQ ++ L+ A +I +GN GG+GKT ++ +A +
Sbjct: 16 IAYLLLPISLIYQFLSYLRASLAYPVILPAQVICVGNCSVGGTGKTQIVIYLAKLLKAKN 75
Query: 78 QEVAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGVL 137
++++ Y K ++ KG+ + GDE +LA + +++ K +L
Sbjct: 76 VPFVIITKAYGSHIKSTTIIQ-KGHTALE---VGDEGIMLA----RYGTVIAAKYVKDIL 127
Query: 138 KAL-ELGAKIVFLDDGFR--FNFNQFNLLLKPKVPPY-YPFCLPSGLYRESIKS-YEEAH 192
+ EL ++ +DD + + F ++ + F +P+G R++ K + A
Sbjct: 128 PLINELKPDVIIVDDFLQNPYLHKDFTIVSVDSQRLFGNRFLIPAGPLRQNPKQVLDAAD 187
Query: 193 LVVTEDKDYQRITSISRP------------------TKRMLLVTAIANPSRLDAFLPK-- 232
L+ + +I + P K + I NP R L
Sbjct: 188 LIFLVSSNQDQIPNELTPYIDKLINAQIVPSNNIDKNKNYFAFSGIGNPQRFFLTLENYR 247
Query: 233 -EVVKKLYFKDHAPF---NLELLEKEFYQNNATSLLVTSKDLVKLQDCNLPLSVLNLKLE 288
+V F DH + +LE L ++NA L+ T KD VK N + L+++L
Sbjct: 248 LNIVGYKIFPDHYNYLQADLENLYSLAKEHNAI-LITTRKDYVKFNYLNDEIICLDVELS 306
Query: 289 I-CPKVLEE 296
I P +L E
Sbjct: 307 INNPDLLNE 315
>emb|CAD20229.1| (AJ426459) tetraacyldisaccharide 4'-kinase [Methylobacterium
chloromethanicum]
Length = 327
Score = 51.6 bits (122), Expect = 1e-05
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Query: 26 LYPFSLIYQGIATLKRKTAKKHDFKIPIISIGNLIAGGSGKTPFILEIAPRYQEV----A 81
L P +Y G+ T R + P++ +GN GG+GKTP L + +++ A
Sbjct: 19 LAPVGRVYGGL-TADRMDRPGAEPPYPVLCVGNFTLGGAGKTPTALALVRLLRDLGRTPA 77
Query: 82 VVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGVLKALE 141
++SRGY G +VV + + GDE LLA + A IV+ R G
Sbjct: 78 LLSRGYGGRLAGPLVVDPARH---AAAEVGDEPLLLA---QAAPTIVARDRPSGARLCAA 131
Query: 142 LGAKIVFLDDGFR 154
GA ++ +DDG +
Sbjct: 132 SGADVIVMDDGLQ 144
>ref|NP_455472.1| (NC_003198) tetraacyldisaccharide 4'-kinase [Salmonella enterica
subsp. enterica serovar Typhi]
sp|Q8Z801|LPXK_SALTI Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
emb|CAD05385.1| (AL627268) tetraacyldisaccharide 4'-kinase [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 325
Score = 50.1 bits (118), Expect = 3e-05
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Query: 26 LYPFSLIY---QGIATLKRKTAKKHDFK--IPIISIGNLIAGGSGKTPFILEIAPRYQE- 79
L P S +Y G L K K ++ +P++ +GNL AGG+GKTP ++ + + Q+
Sbjct: 16 LLPLSWLYGLVSGAIRLSYKLGLKRAWRAPVPVVVVGNLTAGGNGKTPVVIWLVEKLQQR 75
Query: 80 ---VAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGV 136
V VVSRGY + ++ + AGDE L+ A V V+ +R V
Sbjct: 76 GVRVGVVSRGYGGKAAAYPLLLTPE---TTTAEAGDEPVLI-YQRTGAPVAVAPERAAAV 131
Query: 137 LKALEL-GAKIVFLDDGFR 154
L +I+ DDG +
Sbjct: 132 KAILAAHNVQIIITDDGLQ 150
>ref|NP_459960.1| (NC_003197) tetraacyldisaccharide 4' kinase (lipid A 4'kinase)
[Salmonella typhimurium LT2]
sp|Q8ZQC2|LPXK_SALTY Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
gb|AAL19919.1| (AE008742) tetraacyldisaccharide 4' kinase (lipid A 4'kinase)
[Salmonella typhimurium LT2]
Length = 325
Score = 49.7 bits (117), Expect = 4e-05
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Query: 26 LYPFSLIY---QGIATLKRKTAKKHDFK--IPIISIGNLIAGGSGKTPFILEIAPRYQE- 79
L P S +Y G L K K ++ +P++ +GNL AGG+GKTP ++ + + Q+
Sbjct: 16 LLPLSWLYGLVSGAIRLSYKLGFKRAWRAPVPVVVVGNLTAGGNGKTPVVIWLVEKLQQR 75
Query: 80 ---VAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGV 136
V VVSRGY + ++ + AGDE L+ A V V+ +R V
Sbjct: 76 GVRVGVVSRGYGGKAAAYPLLLTPE---TTTAEAGDEPVLI-YQRTGAPVAVAPERAAAV 131
Query: 137 LKALEL-GAKIVFLDDGFR 154
L +I+ DDG +
Sbjct: 132 KAILAAHNVQIIITDDGLQ 150
>ref|NP_286790.1| (NC_002655) putative EC 1.2 enzyme [Escherichia coli O157:H7
EDL933]
ref|NP_309025.1| (NC_002695) putative enzyme [Escherichia coli O157:H7]
sp|Q8XDH0|LPXK_ECO57 Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
gb|AAG55400.1|AE005281_3 (AE005281) putative EC 1.2 enzyme [Escherichia coli O157:H7 EDL933]
dbj|BAB34421.1| (AP002553) putative enzyme [Escherichia coli O157:H7]
Length = 328
Score = 48.5 bits (114), Expect = 9e-05
Identities = 44/140 (31%), Positives = 69/140 (48%), Gaps = 15/140 (10%)
Query: 26 LYPFSLIY---QGIATLKRKTAKKHDFK--IPIISIGNLIAGGSGKTPFILEIAPRYQE- 79
L P S +Y G L K K ++ +P++ +GNL AGG+GKTP ++ + + Q+
Sbjct: 16 LLPLSWLYGLVSGAIRLCYKLKLKRAWRAPVPVVVVGNLTAGGNGKTPVVVWLVEQLQQR 75
Query: 80 ---VAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGV 136
V VVSRGY ++ ++ + + +Q AGDE L+ A V VS R V
Sbjct: 76 GIRVGVVSRGYGGKAESYPLL-LSADTTTAQ--AGDEPVLI-YQRTDAPVAVSPVRSDAV 131
Query: 137 --LKALELGAKIVFLDDGFR 154
+ A +I+ DDG +
Sbjct: 132 KAILAQHPDVQIIVTDDGLQ 151
>ref|NP_415435.1| (NC_000913) putative EC 1.2 enzyme [Escherichia coli K12]
sp|P27300|LPXK_ECOLI Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
pir||B64831 ycaH protein - Escherichia coli
gb|AAC74001.1| (AE000193) putative EC 1.2 enzyme [Escherichia coli K12]
dbj|BAA35661.1| (D90730) Hypothetical protein E (msbA 3' region) [Escherichia coli]
Length = 328
Score = 48.5 bits (114), Expect = 9e-05
Identities = 44/140 (31%), Positives = 69/140 (48%), Gaps = 15/140 (10%)
Query: 26 LYPFSLIY---QGIATLKRKTAKKHDFK--IPIISIGNLIAGGSGKTPFILEIAPRYQE- 79
L P S +Y G L K K ++ +P++ +GNL AGG+GKTP ++ + + Q+
Sbjct: 16 LLPLSWLYGLVSGAIRLCYKLKLKRAWRAPVPVVVVGNLTAGGNGKTPVVVWLVEQLQQR 75
Query: 80 ---VAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGV 136
V VVSRGY ++ ++ + + +Q AGDE L+ A V VS R V
Sbjct: 76 GIRVGVVSRGYGGKAESYPLL-LSADTTTAQ--AGDEPVLI-YQRTDAPVAVSPVRSDAV 131
Query: 137 --LKALELGAKIVFLDDGFR 154
+ A +I+ DDG +
Sbjct: 132 KAILAQHPDVQIIVTDDGLQ 151
>dbj|BAA35659.1| (D90729) Hypothetical protein E (msbA 3' region) [Escherichia coli]
Length = 263
Score = 48.5 bits (114), Expect = 9e-05
Identities = 44/140 (31%), Positives = 69/140 (48%), Gaps = 15/140 (10%)
Query: 26 LYPFSLIY---QGIATLKRKTAKKHDFK--IPIISIGNLIAGGSGKTPFILEIAPRYQE- 79
L P S +Y G L K K ++ +P++ +GNL AGG+GKTP ++ + + Q+
Sbjct: 16 LLPLSWLYGLVSGAIRLCYKLKLKRAWRAPVPVVVVGNLTAGGNGKTPVVVWLVEQLQQR 75
Query: 80 ---VAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGV 136
V VVSRGY ++ ++ + + +Q AGDE L+ A V VS R V
Sbjct: 76 GIRVGVVSRGYGGKAESYPLL-LSADTTTAQ--AGDEPVLI-YQRTDAPVAVSPVRSDAV 131
Query: 137 --LKALELGAKIVFLDDGFR 154
+ A +I+ DDG +
Sbjct: 132 KAILAQHPDVQIIVTDDGLQ 151
>pir||S27999 hypothetical protein E (msbA 3' region) - Escherichia coli
emb|CAA77840.1| (Z11796) essential gene product [Escherichia coli]
Length = 328
Score = 48.5 bits (114), Expect = 9e-05
Identities = 44/140 (31%), Positives = 69/140 (48%), Gaps = 15/140 (10%)
Query: 26 LYPFSLIY---QGIATLKRKTAKKHDFK--IPIISIGNLIAGGSGKTPFILEIAPRYQE- 79
L P S +Y G L K K ++ +P++ +GNL AGG+GKTP ++ + + Q+
Sbjct: 16 LLPLSWLYGLVSGAIRLCYKLKLKRAWRAPVPVVVVGNLTAGGNGKTPVVVWLVEQLQQR 75
Query: 80 ---VAVVSRGYQRDSKGLVVVSVKGNILVSQKTAGDEAYLLALNLKQASVIVSEKRELGV 136
V VVSRGY ++ ++ + + +Q AGDE L+ A V VS R V
Sbjct: 76 GIRVGVVSRGYGGKAESYPLL-LSADTTTAQ--AGDEPVLI-YQRTDAPVAVSPVRSDAV 131
Query: 137 --LKALELGAKIVFLDDGFR 154
+ A +I+ DDG +
Sbjct: 132 KAILAQHPDVQIIVTDDGLQ 151
>ref|NP_419120.1| (NC_002696) tetraacyldisaccharide 4'-kinase [Caulobacter crescentus
CB15]
sp|P58184|LPXK_CAUCR Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
gb|AAK22288.1| (AE005704) tetraacyldisaccharide 4'-kinase [Caulobacter crescentus
CB15]
Length = 335
Score = 48.1 bits (113), Expect = 1e-04
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 52 PIISIGNLIAGGSGKTPFILEIAPRYQEVAV----VSRGYQRDSKGLVVVSVKGNILVSQ 107
P+I +GN+ GG+GKTP + E+ + V +SRGY KG V V I +
Sbjct: 50 PVICVGNVTMGGAGKTPIVRELLLTLTQRGVAAHGLSRGYGGKLKGPVRVD---TIRHTA 106
Query: 108 KTAGDEAYLLALNLKQASVIVSEKRELGVLKALELGAKIVFLDDG 152
GDE +LA + + ++ R G A+ GA + +DDG
Sbjct: 107 ADVGDEPLMLA---QDFPMWIAADRVAGAKAAVRAGASAIVMDDG 148
>ref|NP_251671.1| (NC_002516) tetraacyldisaccharide 4*-kinase [Pseudomonas
aeruginosa]
sp|Q9HZM3|LPXK_PSEAE Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
pir||E83274 tetraacyldisaccharide 4*-kinase PA2981 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06369.1|AE004723_13 (AE004723) tetraacyldisaccharide 4*-kinase [Pseudomonas aeruginosa]
Length = 332
Score = 42.0 bits (97), Expect = 0.009
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 21/190 (11%)
Query: 26 LYPFSLIYQGIATLKRK---TAKKHDFK--IPIISIGNLIAGGSGKTPFIL----EIAPR 76
L P +Y+ +A +R + +K ++ +P++ +GN+ GG+GKTP IL R
Sbjct: 21 LRPLEALYRRVANGRRADFLSGRKPAYRAPLPVLVVGNITVGGTGKTPMILWMIEHCRAR 80
Query: 77 YQEVAVVSRGYQRDSKGLVVVSVKGNILVSQKT--AGDEAYLLALNLKQASVIVSEK-RE 133
V V+SRGY G + + Q AGDE ++ +I ++ R
Sbjct: 81 GLRVGVISRGY-----GARPPTTPWRVRAEQDAAEAGDEPLMIVRRSGVPLMIDPDRPRA 135
Query: 134 LGVLKALELGAKIVFLDDG---FRFNFNQFNLLLKPKVPPYYPFCLPSGLYRESIKSYEE 190
L L A E +V DDG +R + +L+ CLP+G RE + E
Sbjct: 136 LQALLA-EEQLDLVLCDDGLQHYRLARDLELVLIDAARGLGNGRCLPAGPLREPAERLES 194
Query: 191 AHLVVTEDKD 200
++ D
Sbjct: 195 VDALLYNGAD 204
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.140 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,251,454
Number of Sequences: 1026957
Number of extensions: 7828686
Number of successful extensions: 18611
Number of sequences better than 1.0e-02: 39
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 18574
Number of HSP's gapped (non-prelim): 43
length of query: 312
length of database: 324,149,939
effective HSP length: 121
effective length of query: 191
effective length of database: 199,888,142
effective search space: 38178635122
effective search space used: 38178635122
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 97 (42.0 bits)