BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644962|ref|NP_207132.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(134 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207132.1| (NC_000915) conserved hypothetical protein... 265 7e-71
ref|NP_223036.1| (NC_000921) putative [Helicobacter pylori ... 245 7e-65
ref|NP_281818.1| (NC_002163) hypothetical protein Cj0635 [C... 91 2e-18
ref|NP_110106.1| (NC_000912) conserved hypothetical protein... 49 1e-05
ref|NP_442968.1| (NC_000911) hypothetical protein [Synechoc... 45 2e-04
ref|NP_660988.1| (NC_002932) conserved hypothetical protein... 44 4e-04
ref|NP_289521.1| (NC_002655) orf, hypothetical protein [Esc... 41 0.003
gb|AAA69116.1| (U28377) ORF_o180; was also ORF_o62p before ... 41 0.003
ref|NP_417424.1| (NC_000913) orf, hypothetical protein [Esc... 41 0.003
ref|NP_660860.1| (NC_004061) hypothetical 15.2 kD protein i... 40 0.004
ref|NP_457489.1| (NC_003198) conserved hypothetical protein... 39 0.008
ref|NP_462013.1| (NC_003197) putative endonuclease involved... 39 0.008
>ref|NP_207132.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||F64561 conserved hypothetical protein HP0334 - Helicobacter pylori
(strain 26695)
gb|AAD07403.1| (AE000551) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 134
Score = 265 bits (677), Expect = 7e-71
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHES 60
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHES
Sbjct: 1 MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHES 60
Query: 61 YADTNARIEHFIKLVDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSAC 120
YADTNARIEHFIKLVDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSAC
Sbjct: 61 YADTNARIEHFIKLVDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSAC 120
Query: 121 RILERYCQKVLKNH 134
RILERYCQKVLKNH
Sbjct: 121 RILERYCQKVLKNH 134
>ref|NP_223036.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71945 hypothetical protein jhp0317 - Helicobacter pylori (strain J99)
gb|AAD05908.1| (AE001468) putative [Helicobacter pylori J99]
Length = 134
Score = 245 bits (625), Expect = 7e-65
Identities = 123/132 (93%), Positives = 130/132 (98%)
Query: 1 MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHES 60
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLR+K+IQVLVVGKP+ES
Sbjct: 1 MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLRKKDIQVLVVGKPNES 60
Query: 61 YADTNARIEHFIKLVDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSAC 120
YADT+ARIEHFIKLVDFKGEIVFINED SS+EAYENLEHLGKKNKR+A KDGRLDSLSAC
Sbjct: 61 YADTHARIEHFIKLVDFKGEIVFINEDNSSVEAYENLEHLGKKNKRIATKDGRLDSLSAC 120
Query: 121 RILERYCQKVLK 132
RILERYCQ+VLK
Sbjct: 121 RILERYCQQVLK 132
>ref|NP_281818.1| (NC_002163) hypothetical protein Cj0635 [Campylobacter jejuni]
sp|Q9PHN2|Y635_CAMJE Hypothetical protein Cj0635
pir||B81412 hypothetical protein Cj0635 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB75271.1| (AL139075) hypothetical protein Cj0635 [Campylobacter jejuni]
Length = 127
Score = 90.9 bits (224), Expect = 2e-18
Identities = 56/127 (44%), Positives = 80/127 (62%), Gaps = 9/127 (7%)
Query: 3 LACDVGLKRIGIAALLNGVI-LPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPH--E 59
LA DVGLKRIG+A ++ I LPL+A+LR NRNQA+ ++ +LL+ I +L+VG P
Sbjct: 4 LALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGS 63
Query: 60 SYADTNARIEHFIKLVDFKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSA 119
S + RI+HF+ L++F EI F++E +S EA LG KDG+LDSLSA
Sbjct: 64 SEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEA------LGYGVANTRKKDGKLDSLSA 117
Query: 120 CRILERY 126
+++ Y
Sbjct: 118 FIMIKDY 124
>ref|NP_110106.1| (NC_000912) conserved hypothetical protein [Mycoplasma pneumoniae]
sp|P57114|Y29A_MYCPN Hypothetical protein MG291.1 homolog
gb|AAG34748.1|AE000041_6 (AE000041) conserved hypothetical protein [Mycoplasma pneumoniae]
Length = 140
Score = 48.9 bits (115), Expect = 1e-05
Identities = 43/140 (30%), Positives = 70/140 (49%), Gaps = 11/140 (7%)
Query: 2 ILACDVGLKRIGIAAL--LNGVILPLEAI-LRHNRNQASRDLSDLLREKNIQV--LVVGK 56
IL D GLKRIG A + ++ P +++N QA L L++ ++ +V+G
Sbjct: 4 ILGIDFGLKRIGTALVNTIDRFPSPFRVFAVQNNLQQAVNTLFKDLKQAGYELVQIVIGF 63
Query: 57 PHESYADT-NARIEHFIKLVD--FKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
PH Y + I F++L+ F + I+E ++ E NL+ LG KN+ K +
Sbjct: 64 PHFHYQSSIQVSIHKFVELIKTRFNVPVTLIDESGTTSEVKANLQELGLKNR--TFKKAK 121
Query: 114 LDSLSACRILERYCQKVLKN 133
D+L+A ILER+ + N
Sbjct: 122 -DTLAATLILERFLNQQKPN 140
>ref|NP_442968.1| (NC_000911) hypothetical protein [Synechocystis sp. PCC 6803]
sp|P74662|YF47_SYNY3 Hypothetical protein sll1547
pir||S76868 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA18780.1| (D90917) ORF_ID:sll1547~hypothetical protein [Synechocystis sp. PCC
6803]
Length = 152
Score = 44.7 bits (104), Expect = 2e-04
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
Query: 3 LACDVGLKRIGIAALLNGVILP--LEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHES 60
L DVG KRIG+A ++ + I+R + +Q + L+ E+N+ +LVVG P+
Sbjct: 8 LGLDVGRKRIGVAGCDGTGLIATGITTIVRSSYDQDIAQIKQLVEERNVNLLVVGLPYTM 67
Query: 61 YADTNARIEHFIKLVDFKGE-----IVFINEDRSSIEAYENLEHLGKKNKRLAIKD-GRL 114
+ ++ + K E + +++E SS+EA L K KR + D G +
Sbjct: 68 AGEIGSQAKQVQKFARRVAEQLHLPLEYMDERLSSVEAENQL----KARKRFSSYDKGLI 123
Query: 115 DSLSACRILERY 126
D +A IL+++
Sbjct: 124 DQQAAEIILQQW 135
>ref|NP_660988.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum TLS]
gb|AAM71330.1| (AE012788) conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 142
Score = 43.5 bits (101), Expect = 4e-04
Identities = 40/131 (30%), Positives = 66/131 (49%), Gaps = 8/131 (6%)
Query: 2 ILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHESY 61
I+ D G KRIG+A L + + + + + + R LS + ++ I+++VVG P
Sbjct: 9 IIGIDFGTKRIGVA-LSDPLRMFAQPLGTFDMEGLVRVLSRVRDDEGIELVVVGYPMSDK 67
Query: 62 ADTNAR---IEHFIKLV--DFKGEIV-FINEDRSSIEAYENLEHLGKKNKRLAIKDGRLD 115
+ N I+ F+ + F G ++ +E RSS A + L G K+ K GRLD
Sbjct: 68 GEENRMTGVIDRFVAELRESFPGTLIETFDEHRSSRTAMKILAASGSSRKKRNEK-GRLD 126
Query: 116 SLSACRILERY 126
+ +AC IL+ Y
Sbjct: 127 TAAACLILQGY 137
>ref|NP_289521.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_311852.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG58080.1|AE005525_6 (AE005525) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB37248.1| (AP002563) hypothetical protein [Escherichia coli O157:H7]
Length = 138
Score = 40.8 bits (94), Expect = 0.003
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHE 59
+LA D G K IG+A + G PL AI + + LL+E ++VG P
Sbjct: 5 LLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLN 64
Query: 60 ---SYADTNARIEHFIKLVD--FKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRL 114
+ AR F + F E+ +E S++EA L G A+ G++
Sbjct: 65 MDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYR---ALNKGKI 121
Query: 115 DSLSACRILERYCQK 129
DS SA ILE Y ++
Sbjct: 122 DSASAVIILESYFEQ 136
>gb|AAA69116.1| (U28377) ORF_o180; was also ORF_o62p before splice [Escherichia
coli]
Length = 180
Score = 40.8 bits (94), Expect = 0.003
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHE 59
+LA D G K IG+A + G PL AI + + LL+E ++VG P
Sbjct: 47 LLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLN 106
Query: 60 ---SYADTNARIEHFIKLVD--FKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRL 114
+ AR F + F E+ +E S++EA L G A+ G++
Sbjct: 107 MDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYR---ALNKGKV 163
Query: 115 DSLSACRILERYCQK 129
DS SA ILE Y ++
Sbjct: 164 DSASAVIILESYFEQ 178
>ref|NP_417424.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
sp|P52050|YQGF_ECOLI Hypothetical protein yqgF
pir||D65080 hypothetical protein b2949 - Escherichia coli (strain K-12)
gb|AAC75986.1| (AE000377) orf, hypothetical protein [Escherichia coli K12]
Length = 138
Score = 40.8 bits (94), Expect = 0.003
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 10/135 (7%)
Query: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHE 59
+LA D G K IG+A + G PL AI + + LL+E ++VG P
Sbjct: 5 LLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLN 64
Query: 60 ---SYADTNARIEHFIKLVD--FKGEIVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRL 114
+ AR F + F E+ +E S++EA L G A+ G++
Sbjct: 65 MDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVEARSGLFEQGGYR---ALNKGKV 121
Query: 115 DSLSACRILERYCQK 129
DS SA ILE Y ++
Sbjct: 122 DSASAVIILESYFEQ 136
>ref|NP_660860.1| (NC_004061) hypothetical 15.2 kD protein in gshB-ansB [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gb|AAM68071.1| (AE014127) hypothetical 15.2 kD protein in gshB-ansB [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 137
Score = 40.0 bits (92), Expect = 0.004
Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 10/133 (7%)
Query: 1 MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRD---LSDLLREKNIQVLVVGKP 57
+++A D GLK IG+A N ++ A+ + + S D + +LL+ + LVVG P
Sbjct: 2 IVIAFDFGLKNIGVAVGEN-ILKKGRALNKLSAKNGSPDWNNIKNLLKIWQPKFLVVGLP 60
Query: 58 ---HESYADTNARIEHFIKLVDFKGEI-VFINEDRSSIEAYENLEHLGKKNKRLAIKDGR 113
+ D + E F L+ +K I V+++++R S + ++L + KKN +K +
Sbjct: 61 LNIDGTRQDITKKAEKFAFLLKYKFNIFVYLHDERLSTKEAKSL--IFKKNGFKVLKKEK 118
Query: 114 LDSLSACRILERY 126
+ S++A ILE +
Sbjct: 119 IHSVAAVIILESW 131
>ref|NP_457489.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD02921.1| (AL627277) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 138
Score = 39.3 bits (90), Expect = 0.008
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHE 59
+LA D G K IG+A + G PL AI + + LL+E ++VG P
Sbjct: 5 LLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLN 64
Query: 60 ---SYADTNARIEHFIKLVDFK-GEIVFINEDR-SSIEAYENLEHLGKKNKRLAIKDGRL 114
+ AR F + + G V ++++R S++EA L G A+ G++
Sbjct: 65 MDGTEQPLTARARKFANRIHGRFGVTVTLHDERLSTVEARSGLFERGGYR---ALNKGKV 121
Query: 115 DSLSACRILERYCQK 129
DS SA ILE Y ++
Sbjct: 122 DSASAVIILESYFEQ 136
>ref|NP_462013.1| (NC_003197) putative endonuclease involved in recombination
[Salmonella typhimurium LT2]
gb|AAL21972.1| (AE008842) putative endonuclease involved in recombination
[Salmonella typhimurium LT2]
Length = 138
Score = 39.3 bits (90), Expect = 0.008
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 2 ILACDVGLKRIGIAA--LLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHE 59
+LA D G K IG+A + G PL AI + + LL+E ++VG P
Sbjct: 5 LLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLN 64
Query: 60 ---SYADTNARIEHFIKLVDFK-GEIVFINEDR-SSIEAYENLEHLGKKNKRLAIKDGRL 114
+ AR F + + G V ++++R S++EA L G A+ G++
Sbjct: 65 MDGTEQPLTARARKFANRIHGRFGVTVTLHDERLSTVEARSGLFERGGYR---ALNKGKV 121
Query: 115 DSLSACRILERYCQK 129
DS SA ILE Y ++
Sbjct: 122 DSASAVIILESYFEQ 136
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.140 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,994,599
Number of Sequences: 1026957
Number of extensions: 2876084
Number of successful extensions: 7910
Number of sequences better than 1.0e-02: 12
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 7902
Number of HSP's gapped (non-prelim): 12
length of query: 134
length of database: 324,149,939
effective HSP length: 110
effective length of query: 24
effective length of database: 211,184,669
effective search space: 5068432056
effective search space used: 5068432056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 89 (38.9 bits)