BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644963|ref|NP_207133.1| hypothetical protein
[Helicobacter pylori 26695]
(62 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207133.1| (NC_000915) hypothetical protein [Helicoba... 132 1e-30
gb|AAL47058.1|AF326608_1 (AF326608) JHP318-like protein [He... 50 4e-06
gb|AAL47063.1|AF326616_1 (AF326616) JHP1024-like protein [H... 48 2e-05
ref|NP_223741.1| (NC_000921) putative [Helicobacter pylori ... 40 0.008
>ref|NP_207133.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||G64561 hypothetical protein HP0335 - Helicobacter pylori (strain 26695)
gb|AAD07407.1| (AE000551) H. pylori predicted coding region HP0335 [Helicobacter
pylori 26695]
Length = 62
Score = 132 bits (331), Expect = 1e-30
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 1 MAEPTPEEPVDLGLKSMRLGNVSGKVEDFIRGRKYIEKACELNDGRGWNGKKRLEESHSI 60
MAEPTPEEPVDLGLKSMRLGNVSGKVEDFIRGRKYIEKACELNDGRGWNGKKRLEESHSI
Sbjct: 1 MAEPTPEEPVDLGLKSMRLGNVSGKVEDFIRGRKYIEKACELNDGRGWNGKKRLEESHSI 60
Query: 61 LC 62
LC
Sbjct: 61 LC 62
>gb|AAL47058.1|AF326608_1 (AF326608) JHP318-like protein [Helicobacter pylori]
Length = 215
Score = 50.4 bits (119), Expect = 4e-06
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 1 MAEPTPEEPVDLGLKSMRLGNVSGKVEDFIRGRKYIEKACELNDGRGWN 49
MAEP PEE VDLG+ +S +DF + RKY E+AC LN+GRG N
Sbjct: 25 MAEPNPEELVDLGM-------LSYDKQDFSKARKYFERACGLNNGRGCN 66
>gb|AAL47063.1|AF326616_1 (AF326616) JHP1024-like protein [Helicobacter pylori]
Length = 122
Score = 48.1 bits (113), Expect = 2e-05
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 7/47 (14%)
Query: 1 MAEPTPEEPVDLGLKSMRLGNVSGKVEDFIRGRKYIEKACELNDGRG 47
MAEP P+E DLG+++ K +D+I+ +KY EKACEL DG G
Sbjct: 25 MAEPNPKELFDLGVENY-------KAKDYIKAKKYFEKACELKDGGG 64
>ref|NP_223741.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71859 hypothetical protein jhp1024 - Helicobacter pylori (strain J99)
gb|AAD06595.1| (AE001530) putative [Helicobacter pylori J99]
Length = 290
Score = 39.7 bits (91), Expect = 0.008
Identities = 21/47 (44%), Positives = 27/47 (56%), Gaps = 7/47 (14%)
Query: 1 MAEPTPEEPVDLGLKSMRLGNVSGKVEDFIRGRKYIEKACELNDGRG 47
MAE P+E V LG KS K +DF + +KY EKAC+L + G
Sbjct: 24 MAEQDPKELVGLGAKSY-------KEQDFTQAKKYFEKACDLKENSG 63
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.314 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,232,868
Number of Sequences: 1026957
Number of extensions: 1475461
Number of successful extensions: 2097
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2088
Number of HSP's gapped (non-prelim): 9
length of query: 62
length of database: 324,149,939
effective HSP length: 38
effective length of query: 24
effective length of database: 285,125,573
effective search space: 6843013752
effective search space used: 6843013752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 91 (39.7 bits)