BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644964|ref|NP_207134.1| hypothetical protein
[Helicobacter pylori 26695]
(138 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207134.1| (NC_000915) hypothetical protein [Helicoba... 287 1e-77
gb|AAM66156.1|AF326634_1 (AF326634) JHP1437-like protein [H... 121 1e-27
gb|AAM66151.1|AF326630_1 (AF326630) JHP1437-like protein [H... 120 3e-27
gb|AAM66148.1|AF326627_1 (AF326627) JHP1437-like protein [H... 119 7e-27
ref|NP_224155.1| (NC_000921) putative [Helicobacter pylori ... 118 1e-26
ref|NP_207889.1| (NC_000915) conserved hypothetical secrete... 117 2e-26
gb|AAM66150.1|AF326629_1 (AF326629) JHP1437-like protein [H... 117 3e-26
ref|NP_223741.1| (NC_000921) putative [Helicobacter pylori ... 116 4e-26
ref|NP_223037.1| (NC_000921) putative [Helicobacter pylori ... 115 8e-26
gb|AAB63298.1| (AF008565) Orf2 [Helicobacter pylori] 115 1e-25
gb|AAC24210.1| (AF053708) cysteine-rich protein; HcpA [Heli... 115 1e-25
ref|NP_222918.1| (NC_000921) putative [Helicobacter pylori ... 114 1e-25
gb|AAL47062.1|AF326614_1 (AF326614) JHP318-like protein [He... 114 1e-25
ref|NP_207009.1| (NC_000915) conserved hypothetical secrete... 113 3e-25
gb|AAM66149.1|AF326628_1 (AF326628) JHP1437-like protein [H... 112 9e-25
gb|AAM66155.1|AF326633_1 (AF326633) JHP1437-like protein [H... 111 1e-24
gb|AAL47059.1|AF326610_1 (AF326610) JHP318-like protein [He... 107 2e-23
gb|AAL47060.1|AF326611_1 (AF326611) JHP318-like protein [He... 103 4e-22
gb|AAL47058.1|AF326608_1 (AF326608) JHP318-like protein [He... 102 9e-22
ref|NP_222941.1| (NC_000921) putative [Helicobacter pylori ... 96 7e-20
ref|NP_207033.1| (NC_000915) conserved hypothetical secrete... 92 1e-18
ref|NP_222869.1| (NC_000921) putative [Helicobacter pylori ... 91 3e-18
ref|NP_206959.1| (NC_000915) conserved hypothetical secrete... 86 7e-17
ref|NP_281603.1| (NC_002163) putative periplasmic protein [... 71 2e-12
gb|AAL47063.1|AF326616_1 (AF326616) JHP1024-like protein [H... 65 1e-10
gb|EAA06387.1| (AAAB01008846) agCP13101 [Anopheles gambiae ... 65 1e-10
ref|NP_207422.1| (NC_000915) hypothetical protein [Helicoba... 64 4e-10
ref|NP_223289.1| (NC_000921) putative [Helicobacter pylori ... 62 8e-10
ref|NP_651179.1| (NM_142922) BcDNA:LD23587 gene product [Dr... 60 4e-09
gb|AAF45339.1| (AE003066) CG13865 gene product [Drosophila ... 59 7e-09
emb|CAB65792.2| (AL109657) dJ842G6.2 (novel protein imilar ... 57 5e-08
ref|XP_046437.2| (XM_046437) similar to dJ842G6.2 (novel pr... 57 5e-08
ref|NP_455035.1| (NC_003198) conserved hypothetical protein... 56 8e-08
ref|NP_207316.1| (NC_000915) conserved hypothetical protein... 54 4e-07
gb|AAB47276.1| (U86608) 29 kDa protein [Helicobacter pylori] 52 1e-06
ref|NP_223762.1| (NC_000921) putative [Helicobacter pylori ... 52 1e-06
ref|NP_207908.1| (NC_000915) conserved hypothetical secrete... 51 2e-06
gb|AAL83953.1|AF354056_1 (AF354056) temperature-induced pro... 51 2e-06
ref|NP_506144.1| (NM_073743) Yeast hypothetical gene L8167.... 50 4e-06
gb|AAC47112.1| (U50828) sel-1 gene product [Caenorhabditis ... 50 4e-06
ref|NP_223186.1| (NC_000921) putative [Helicobacter pylori ... 50 6e-06
gb|AAD05210.1| (AF063095) SELlL [Mus musculus] >gi|20073079... 48 2e-05
ref|XP_127076.1| (XM_127076) similar to Sel-1 homolog precu... 48 2e-05
ref|NP_005056.3| (NM_005065) sel-1 suppressor of lin-12-lik... 48 2e-05
ref|NP_460954.1| (NC_003197) putative TPR repeat protein [S... 48 2e-05
gb|AAF29413.1|AF052059_1 (AF052059) SEL1L [Homo sapiens] >g... 48 2e-05
dbj|BAB12403.1| (AB048195) SEL1L [Mesocricetus auratus] 48 2e-05
gb|EAA00460.1| (AAAB01008986) agCP9334 [Anopheles gambiae s... 47 4e-05
gb|AAD41587.1|AF057704_3 (AF057704) enhanced entry protein ... 47 4e-05
ref|NP_459646.1| (NC_003197) putative TPR repeat protein [S... 47 4e-05
ref|NP_246550.1| (NC_002663) unknown [Pasteurella multocida... 46 6e-05
ref|NP_586349.1| (NC_003237) similarity to SKT5 PROTEIN [En... 46 6e-05
ref|NP_496487.1| (NM_064086) ZK20.4.p [Caenorhabditis elega... 45 1e-04
ref|NP_662672.1| (NC_002932) conserved hypothetical protein... 44 4e-04
gb|AAC37164.1| (L05770) putative regulatory protein PobS [A... 44 4e-04
gb|AAH15313.1|AAH15313 (BC015313) hypothetical protein FLJ1... 43 7e-04
ref|NP_075565.1| (NM_023077) hypothetical protein FLJ12439 ... 43 7e-04
ref|NP_455743.1| (NC_003198) putative secreted protein [Sal... 42 9e-04
ref|NP_460716.1| (NC_003197) putative TPR repeat protein [S... 42 9e-04
ref|NP_564049.1| (NM_101684) expressed protein [Arabidopsis... 42 0.001
gb|AAK64159.1| (AY039982) unknown protein [Arabidopsis thal... 42 0.001
ref|NP_459433.1| (NC_003197) putative periplasmic protein [... 42 0.002
ref|NP_455031.1| (NC_003198) probable secreted protein [Sal... 41 0.002
ref|XP_131544.1| (XM_131544) RIKEN cDNA 2010305A19 [Mus mus... 41 0.002
ref|NP_245305.1| (NC_002663) unknown [Pasteurella multocida... 41 0.002
ref|NP_103302.1| (NC_002678) unknown protein [Mesorhizobium... 41 0.002
dbj|BAB25716.1| (AK008518) data source:SPTR, source key:Q9H... 41 0.002
ref|NP_415177.1| (NC_000913) orf, hypothetical protein [Esc... 41 0.003
ref|NP_286370.1| (NC_002655) ybeQ gene product [Escherichia... 41 0.003
sp|P77234|YBEQ_ECOLI Hypothetical protein ybeQ 41 0.003
ref|NP_405544.1| (NC_003143) putative exported protein [Yer... 40 0.004
ref|NP_439767.1| (NC_000907) H. influenzae predicted coding... 40 0.004
gb|AAK54860.1| (AF304855) SEL1L [Rattus norvegicus] 40 0.006
ref|NP_197519.1| (NM_122026) putative protein [Arabidopsis ... 39 0.010
ref|NP_252667.1| (NC_002516) hypothetical protein [Pseudomo... 39 0.010
ref|NP_473246.1| (NC_000521) predicted using hexExon; MAL3P... 39 0.010
pir||T46587 hypothetical protein [imported] - Vogesella ind... 39 0.010
>ref|NP_207134.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||H64561 invalid gene - Helicobacter pylori (strain 26695)
gb|AAD07408.1| (AE000551) H. pylori predicted coding region HP0336 [Helicobacter
pylori 26695]
Length = 138
Score = 287 bits (735), Expect = 1e-77
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGC 60
MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGC
Sbjct: 1 MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGC 60
Query: 61 RFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTF 120
RFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTF
Sbjct: 61 RFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTF 120
Query: 121 EKACRLGSEDACGILNNY 138
EKACRLGSEDACGILNNY
Sbjct: 121 EKACRLGSEDACGILNNY 138
>gb|AAM66156.1|AF326634_1 (AF326634) JHP1437-like protein [Helicobacter pylori]
Length = 327
Score = 121 bits (303), Expect = 1e-27
Identities = 63/138 (45%), Positives = 82/138 (58%), Gaps = 6/138 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSG 57
G V ++ KKA +YY KACELN GC L + + +K F Y SKACELN
Sbjct: 185 GEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFFGESVTQDLKKAFGYYSKACELNEA 244
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
C +G+FY +G+ V KDL+KA +Y +KAC LND GC L GKGV + EKQ
Sbjct: 245 LTCTLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYALAAFYNEGKGVARGEKQMT 304
Query: 118 KTFEKACRLGSEDACGIL 135
+ FEK+C+LG ++AC L
Sbjct: 305 ENFEKSCKLGLKEACDFL 322
Score = 111 bits (278), Expect = 1e-24
Identities = 55/136 (40%), Positives = 84/136 (61%), Gaps = 8/136 (5%)
Query: 10 DLKKAIQYYVKACELNEMFGCL-------SLVSNSQINKQKLFQYLSKACELNSGNGCRF 62
DLK A++YY K+C+LN + GC+ ++ + +K+ L +Y SKACELN G+GC
Sbjct: 119 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDL-EYYSKACELNYGDGCAI 177
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LGD Y NG+ V ++ +KA +YYSKAC LN+ +GC LG + G+ V ++ K+A + K
Sbjct: 178 LGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFFGESVTQDLKKAFGYYSK 237
Query: 123 ACRLGSEDACGILNNY 138
AC L C ++ +
Sbjct: 238 ACELNEALTCTLVGEF 253
Score = 83.6 bits (205), Expect = 3e-16
Identities = 56/171 (32%), Positives = 79/171 (45%), Gaps = 45/171 (26%)
Query: 9 KDLKKAIQYYVKACELNEMFGCLSL-----------VSNSQINK---------------- 41
KD +A +Y+ KACEL++ GC+ L + I K
Sbjct: 45 KDFTRAKEYFEKACELHDADGCIILRETYSKVILKGSAKESIEKAIEHIATAKACKSNDA 104
Query: 42 ----------------QKLFQYLSKACELNSGNGCRFLGDFYENG-KYVKKDLRKAAQYY 84
+ +Y SK+C+LN+ GC FY + K +KKD +K +YY
Sbjct: 105 EKCKDLAEFYFNANDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD-KKDLEYY 163
Query: 85 SKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 135
SKAC LN DGC ILG + G+GV +N K+A K + KAC L + + C L
Sbjct: 164 SKACELNYGDGCAILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKL 214
Score = 43.1 bits (100), Expect = 5e-04
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 72 YVKKDLRKAAQYYSKACGLNDQDGCLIL--GYKQYAGKGVVKNE-KQAVK--TFEKACRL 126
Y KD +A +Y+ KAC L+D DGC+IL Y + KG K ++A++ KAC+
Sbjct: 42 YTDKDFTRAKEYFEKACELHDADGCIILRETYSKVILKGSAKESIEKAIEHIATAKACKS 101
Query: 127 GSEDAC 132
+ C
Sbjct: 102 NDAEKC 107
>gb|AAM66151.1|AF326630_1 (AF326630) JHP1437-like protein [Helicobacter pylori]
Length = 255
Score = 120 bits (300), Expect = 3e-27
Identities = 60/133 (45%), Positives = 84/133 (63%), Gaps = 8/133 (6%)
Query: 10 DLKKAIQYYVKACELNEMFGCL-------SLVSNSQINKQKLFQYLSKACELNSGNGCRF 62
DLK A++YY K+C+LN + GC+ ++ + +K+ L +Y SKACELN C
Sbjct: 119 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDL-EYYSKACELNEALTCTL 177
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
+G+FY +G+ V KDL+KA +Y +KAC LND GC L GKGV K EKQ + EK
Sbjct: 178 VGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYALAAFYNEGKGVAKGEKQTTENLEK 237
Query: 123 ACRLGSEDACGIL 135
+C+LG ++AC IL
Sbjct: 238 SCKLGLKEACDIL 250
Score = 45.8 bits (107), Expect = 8e-05
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 30/96 (31%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFL 63
G V KDLKKA +Y KACELN+ GC +L +
Sbjct: 185 GEGVTKDLKKAFEYSAKACELNDAKGCYALAA---------------------------- 216
Query: 64 GDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
FY GK V K ++ + K+C L ++ C IL
Sbjct: 217 --FYNEGKGVAKGEKQTTENLEKSCKLGLKEACDIL 250
Score = 43.5 bits (101), Expect = 4e-04
Identities = 26/66 (39%), Positives = 33/66 (49%), Gaps = 5/66 (7%)
Query: 72 YVKKDLRKAAQYYSKACGLNDQDGCLIL--GYKQYAGKGVVKN--EKQAVKT-FEKACRL 126
Y KD +A +Y+ KAC LND DGC IL Y + KG + EK T KAC+
Sbjct: 42 YTDKDFTRAKEYFEKACKLNDADGCTILREAYSKVILKGSARESIEKALEHTATAKACKS 101
Query: 127 GSEDAC 132
+ C
Sbjct: 102 NDAEKC 107
>gb|AAM66148.1|AF326627_1 (AF326627) JHP1437-like protein [Helicobacter pylori]
Length = 253
Score = 119 bits (297), Expect = 7e-27
Identities = 59/132 (44%), Positives = 84/132 (62%), Gaps = 8/132 (6%)
Query: 10 DLKKAIQYYVKACELNEMFGCL-------SLVSNSQINKQKLFQYLSKACELNSGNGCRF 62
DLK A++YY K+C+LN + GC+ ++ + +K+ L +Y SKACELN C
Sbjct: 117 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDL-EYYSKACELNEALTCTL 175
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
+G+FY +G+ V KDL+KA +Y +KAC LND GC L GKGV K+EKQ + EK
Sbjct: 176 VGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYALAAFYNEGKGVAKDEKQTTENLEK 235
Query: 123 ACRLGSEDACGI 134
+C+LG ++AC I
Sbjct: 236 SCKLGLKEACDI 247
Score = 47.0 bits (110), Expect = 4e-05
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 30/93 (32%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFL 63
G V KDLKKA +Y KACELN+ GC +L +
Sbjct: 183 GEGVTKDLKKAFEYSAKACELNDAKGCYALAA---------------------------- 214
Query: 64 GDFYENGKYVKKDLRKAAQYYSKACGLNDQDGC 96
FY GK V KD ++ + K+C L ++ C
Sbjct: 215 --FYNEGKGVAKDEKQTTENLEKSCKLGLKEAC 245
Score = 41.6 bits (96), Expect = 0.002
Identities = 25/66 (37%), Positives = 33/66 (49%), Gaps = 5/66 (7%)
Query: 72 YVKKDLRKAAQYYSKACGLNDQDGCLIL--GYKQYAGKGVVKN--EKQAVKT-FEKACRL 126
Y KD +A +Y+ KAC L+D DGC IL Y + KG + EK T KAC+
Sbjct: 40 YTDKDFTRAKEYFEKACELHDADGCAILREAYSKVILKGSARESIEKALEHTATAKACKS 99
Query: 127 GSEDAC 132
+ C
Sbjct: 100 NDAEKC 105
>ref|NP_224155.1| (NC_000921) putative [Helicobacter pylori J99]
pir||E71807 hypothetical protein jhp1437 - Helicobacter pylori (strain J99)
gb|AAD07008.1| (AE001566) putative [Helicobacter pylori J99]
Length = 256
Score = 118 bits (296), Expect = 1e-26
Identities = 61/133 (45%), Positives = 84/133 (62%), Gaps = 8/133 (6%)
Query: 10 DLKKAIQYYVKACELNEMFGCL-------SLVSNSQINKQKLFQYLSKACELNSGNGCRF 62
DLK A++YY K+C+LN + GC+ ++ + +K+ L +Y SKACELN+G GC
Sbjct: 120 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDL-EYYSKACELNNGGGCSK 178
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LG Y G+ V KD +KA +Y +KAC LND GC L GKGV K+EKQ + EK
Sbjct: 179 LGGDYFFGEGVTKDFKKAFEYSAKACELNDAKGCYALAAFYNEGKGVAKDEKQTTENLEK 238
Query: 123 ACRLGSEDACGIL 135
+C+LG ++AC IL
Sbjct: 239 SCKLGLKEACDIL 251
Score = 68.6 bits (166), Expect = 1e-11
Identities = 49/170 (28%), Positives = 74/170 (42%), Gaps = 47/170 (27%)
Query: 9 KDLKKAIQYYVKACELNEMFGC-------------------------LSLVSNSQINK-- 41
K+ +A +Y+ KAC+ N+ GC L + +++ K
Sbjct: 44 KNFTRAKKYFEKACKSNDADGCAILREVYSSGKAIARENARESIEKALEHTATAKVCKLN 103
Query: 42 ------------------QKLFQYLSKACELNSGNGCRFLGDFYENG-KYVKKDLRKAAQ 82
+ +Y SK+C+LN+ GC FY + K +KKD +K +
Sbjct: 104 DAEKCKDLAEFYFNVNDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD-KKDLE 162
Query: 83 YYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDAC 132
YYSKAC LN+ GC LG + G+GV K+ K+A + KAC L C
Sbjct: 163 YYSKACELNNGGGCSKLGGDYFFGEGVTKDFKKAFEYSAKACELNDAKGC 212
Score = 52.4 bits (124), Expect = 9e-07
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 43/149 (28%)
Query: 27 MFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK----------- 75
+F +++ ++ + K +Y KAC+ N +GC L + Y +GK + +
Sbjct: 34 IFSGITIYTDKNFTRAK--KYFEKACKSNDADGCAILREVYSSGKAIARENARESIEKAL 91
Query: 76 ----------------------------DLRKAAQYYSKACGLNDQDGCLILG-YKQYAG 106
DL+ A +YYSK+C LN+ +GC++ +
Sbjct: 92 EHTATAKVCKLNDAEKCKDLAEFYFNVNDLKNALEYYSKSCKLNNVEGCMLSATFYNDMI 151
Query: 107 KGVVKNEKQAVKTFEKACRLGSEDACGIL 135
KG +K +K+ ++ + KAC L + C L
Sbjct: 152 KG-LKKDKKDLEYYSKACELNNGGGCSKL 179
Score = 47.0 bits (110), Expect = 4e-05
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 30/96 (31%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFL 63
G V KD KKA +Y KACELN+ GC +L +
Sbjct: 186 GEGVTKDFKKAFEYSAKACELNDAKGCYALAA---------------------------- 217
Query: 64 GDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
FY GK V KD ++ + K+C L ++ C IL
Sbjct: 218 --FYNEGKGVAKDEKQTTENLEKSCKLGLKEACDIL 251
>ref|NP_207889.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||B64657 conserved hypothetical secreted protein HP1098 - Helicobacter
pylori (strain 26695)
gb|AAD08141.1| (AE000616) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 290
Score = 117 bits (293), Expect = 2e-26
Identities = 61/136 (44%), Positives = 80/136 (57%), Gaps = 8/136 (5%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQI-------NKQKLFQYLSKACELNS 56
G V+K+LKKA +Y KAC+LN GC L+ N N K QY SKAC+L
Sbjct: 74 GQGVEKNLKKAASFYAKACDLNYSNGC-HLLGNLYYSGQGVSQNTNKALQYYSKACDLKY 132
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116
GC LG Y +GK V +D +KA +Y++KAC LND DGC ILG AG+G K+ K+A
Sbjct: 133 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKA 192
Query: 117 VKTFEKACRLGSEDAC 132
+ +++KAC L C
Sbjct: 193 LASYDKACDLKDSPGC 208
Score = 114 bits (284), Expect = 2e-25
Identities = 57/138 (41%), Positives = 81/138 (58%), Gaps = 6/138 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSG 57
G V +D KKA++Y+ KAC+LN+ GC L S + +K KAC+L
Sbjct: 146 GKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDS 205
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
GC G+ Y +G+ K+ ++A YSKAC L + GC LG QY G+GV +NEKQA+
Sbjct: 206 PGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAI 265
Query: 118 KTFEKACRLGSEDACGIL 135
+ F+K C+LG++ AC IL
Sbjct: 266 ENFKKGCKLGAKGACDIL 283
Score = 106 bits (264), Expect = 5e-23
Identities = 56/136 (41%), Positives = 79/136 (57%), Gaps = 6/136 (4%)
Query: 8 KKDLKKAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSGNGCR 61
+KD +A +Y+ KAC+L E GC +L + N +K + +KAC+LN NGC
Sbjct: 42 EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCH 101
Query: 62 FLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121
LG+ Y +G+ V ++ KA QYYSKAC L +GC LG + GK V ++ K+AV+ F
Sbjct: 102 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFT 161
Query: 122 KACRLGSEDACGILNN 137
KAC L D C IL +
Sbjct: 162 KACDLNDGDGCTILGS 177
Score = 62.0 bits (149), Expect = 1e-09
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 72 YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDA 131
Y +KD +A +Y+ KAC L + GC LG Y G+GV KN K+A + KAC L +
Sbjct: 40 YKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNG 99
Query: 132 CGILNN 137
C +L N
Sbjct: 100 CHLLGN 105
>gb|AAM66150.1|AF326629_1 (AF326629) JHP1437-like protein [Helicobacter pylori]
Length = 325
Score = 117 bits (292), Expect = 3e-26
Identities = 59/136 (43%), Positives = 86/136 (62%), Gaps = 8/136 (5%)
Query: 10 DLKKAIQYYVKACELNEMFGCL-------SLVSNSQINKQKLFQYLSKACELNSGNGCRF 62
DLK A++YY K+C+LN + GC+ ++ + +K+ L +Y SKACELN G+GC
Sbjct: 118 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDL-EYYSKACELNYGDGCAI 176
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LGD Y NG+ V KDL+KA QYYSKAC LN+ +G LG + G+GV ++ K+A + K
Sbjct: 177 LGDIYHNGEGVAKDLKKAFQYYSKACELNNGEGYSKLGGAYFFGEGVTQDLKKAFGYYSK 236
Query: 123 ACRLGSEDACGILNNY 138
AC+L C ++ +
Sbjct: 237 ACKLNEALTCTLVGEF 252
Score = 115 bits (287), Expect = 1e-25
Identities = 61/137 (44%), Positives = 79/137 (57%), Gaps = 6/137 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELN------EMFGCLSLVSNSQINKQKLFQYLSKACELNSG 57
G V KDLKKA QYY KACELN ++ G + +K F Y SKAC+LN
Sbjct: 184 GEGVAKDLKKAFQYYSKACELNNGEGYSKLGGAYFFGEGVTQDLKKAFGYYSKACKLNEA 243
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
C +G+FY +G+ V KDL+KA +Y +KAC LND GC L KGV + EKQ
Sbjct: 244 LTCTLVGEFYRDGEGVAKDLKKAFEYSAKACELNDAKGCYALAAFFNEAKGVARGEKQTT 303
Query: 118 KTFEKACRLGSEDACGI 134
+ EK+C+LG ++ C I
Sbjct: 304 ENLEKSCKLGLKETCDI 320
Score = 74.3 bits (181), Expect = 2e-13
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 17/141 (12%)
Query: 9 KDLKKAIQYYVKACELNEMFGCLSLVS---------NSQINKQKLFQYLS--KACELNSG 57
K+ +A +Y+ KAC+ N+ GC L N++ + +K ++ + KAC+ N
Sbjct: 44 KNFTRAKKYFEKACKSNDADGCAILREAYSKAIARENARESIEKALEHTATAKACKSNDA 103
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILG-YKQYAGKGVVKNEKQA 116
CR L +FY N DL+ A +YYSK+C LN+ +GC++ + KG +K +K+
Sbjct: 104 EKCRDLAEFYFN----VNDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKG-LKKDKKD 158
Query: 117 VKTFEKACRLGSEDACGILNN 137
++ + KAC L D C IL +
Sbjct: 159 LEYYSKACELNYGDGCAILGD 179
>ref|NP_223741.1| (NC_000921) putative [Helicobacter pylori J99]
pir||C71859 hypothetical protein jhp1024 - Helicobacter pylori (strain J99)
gb|AAD06595.1| (AE001530) putative [Helicobacter pylori J99]
Length = 290
Score = 116 bits (291), Expect = 4e-26
Identities = 61/136 (44%), Positives = 80/136 (57%), Gaps = 8/136 (5%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQI-------NKQKLFQYLSKACELNS 56
G V+K+LKKA +Y KAC+LN GC L+ N N K QY SKAC+L
Sbjct: 74 GHGVEKNLKKAASFYSKACDLNYSNGC-HLLGNLYYSGQGVSQNTNKALQYYSKACDLKY 132
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116
GC LG Y +GK V +D +KA +Y++KAC LND DGC ILG AG+G K+ K+A
Sbjct: 133 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKA 192
Query: 117 VKTFEKACRLGSEDAC 132
+ +++KAC L C
Sbjct: 193 LASYDKACDLKDSPGC 208
Score = 112 bits (280), Expect = 7e-25
Identities = 56/138 (40%), Positives = 80/138 (57%), Gaps = 6/138 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSG 57
G V +D KKA++Y+ KAC+LN+ GC L S + +K KAC+L
Sbjct: 146 GKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDS 205
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
GC G+ Y +G+ K+ ++A YSKAC L + GC LG QY G+G +NEKQA+
Sbjct: 206 PGCFNAGNMYHHGEGAAKNFKEALARYSKACELENGGGCFNLGAMQYNGEGATRNEKQAI 265
Query: 118 KTFEKACRLGSEDACGIL 135
+ F+K C+LG++ AC IL
Sbjct: 266 ENFKKGCKLGAKGACDIL 283
Score = 105 bits (262), Expect = 8e-23
Identities = 56/136 (41%), Positives = 79/136 (57%), Gaps = 6/136 (4%)
Query: 8 KKDLKKAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSGNGCR 61
++D +A +Y+ KAC+L E GC +L + N +K + SKAC+LN NGC
Sbjct: 42 EQDFTQAKKYFEKACDLKENSGCFNLGVLYYQGHGVEKNLKKAASFYSKACDLNYSNGCH 101
Query: 62 FLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121
LG+ Y +G+ V ++ KA QYYSKAC L +GC LG + GK V ++ K+AV+ F
Sbjct: 102 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFT 161
Query: 122 KACRLGSEDACGILNN 137
KAC L D C IL +
Sbjct: 162 KACDLNDGDGCTILGS 177
Score = 60.1 bits (144), Expect = 4e-09
Identities = 27/66 (40%), Positives = 37/66 (55%)
Query: 72 YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDA 131
Y ++D +A +Y+ KAC L + GC LG Y G GV KN K+A + KAC L +
Sbjct: 40 YKEQDFTQAKKYFEKACDLKENSGCFNLGVLYYQGHGVEKNLKKAASFYSKACDLNYSNG 99
Query: 132 CGILNN 137
C +L N
Sbjct: 100 CHLLGN 105
>ref|NP_223037.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71945 hypothetical protein jhp0318 - Helicobacter pylori (strain J99)
gb|AAD05894.1| (AE001468) putative [Helicobacter pylori J99]
Length = 251
Score = 115 bits (288), Expect = 8e-26
Identities = 67/135 (49%), Positives = 81/135 (59%), Gaps = 6/135 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSG 57
G V+K+L KA Q Y KACEL E GC L S + N K QY SKAC+LN+G
Sbjct: 40 GKGVEKNLIKAAQPYTKACELKEGLGCERLWSLYYYGRGVEKNLIKAAQYASKACDLNNG 99
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
GC+ LG YE G+ V+KDL KAAQY SKAC LN+ GC +LG+ +GKGV KN +A
Sbjct: 100 VGCKNLGFLYEYGEGVEKDLIKAAQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAA 159
Query: 118 KTFEKACRLGSEDAC 132
+ KAC L C
Sbjct: 160 YFYSKACDLNEGLGC 174
Score = 105 bits (263), Expect = 6e-23
Identities = 63/138 (45%), Positives = 80/138 (57%), Gaps = 7/138 (5%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSL----VSNSQINKQ--KLFQYLSKACELNSG 57
G V+K+L KA QY KAC+LN GC +L + K K QY SKAC+LN+G
Sbjct: 76 GRGVEKNLIKAAQYASKACDLNNGVGCKNLGFLYEYGEGVEKDLIKAAQYASKACDLNNG 135
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
+GC LG Y +GK V+K+L KAA +YSKAC LN+ GC LG Y G+GV K+ +
Sbjct: 136 SGCDVLGFLYGSGKGVEKNLTKAAYFYSKACDLNEGLGCFNLG-GLYNGQGVEKDLTKVA 194
Query: 118 KTFEKACRLGSEDACGIL 135
+ KAC L CG L
Sbjct: 195 YLYSKACELKESFGCGAL 212
Score = 100 bits (248), Expect = 4e-21
Identities = 62/138 (44%), Positives = 78/138 (55%), Gaps = 7/138 (5%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNS----QINKQKLFQYLSKACELNSG 57
G V+KDL KA QY KAC+LN GC L + S + N K + SKAC+LN G
Sbjct: 112 GEGVEKDLIKAAQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAAYFYSKACDLNEG 171
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
GC LG Y NG+ V+KDL K A YSKAC L + GC L G+GV K+ +A
Sbjct: 172 LGCFNLGGLY-NGQGVEKDLTKVAYLYSKACELKESFGCGALAVLYINGQGVEKDLTKAD 230
Query: 118 KTFEKACRLGSEDACGIL 135
+ KAC+LG ++AC L
Sbjct: 231 QYISKACKLGDQEACEAL 248
Score = 88.6 bits (218), Expect = 1e-17
Identities = 55/133 (41%), Positives = 72/133 (53%), Gaps = 6/133 (4%)
Query: 9 KDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSGNGCRF 62
KD +A +Y+ KAC LN GC +L + N K Q +KACEL G GC
Sbjct: 9 KDFIQAKKYFEKACNLNYGGGCGALGDLYDDGKGVEKNLIKAAQPYTKACELKEGLGCER 68
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
L Y G+ V+K+L KAAQY SKAC LN+ GC LG+ G+GV K+ +A + K
Sbjct: 69 LWSLYYYGRGVEKNLIKAAQYASKACDLNNGVGCKNLGFLYEYGEGVEKDLIKAAQYASK 128
Query: 123 ACRLGSEDACGIL 135
AC L + C +L
Sbjct: 129 ACDLNNGSGCDVL 141
Score = 82.4 bits (202), Expect = 8e-16
Identities = 50/104 (48%), Positives = 61/104 (58%), Gaps = 5/104 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSL--VSNSQ-INKQ--KLFQYLSKACELNSGN 58
G V+K+L KA +Y KAC+LNE GC +L + N Q + K K+ SKACEL
Sbjct: 148 GKGVEKNLTKAAYFYSKACDLNEGLGCFNLGGLYNGQGVEKDLTKVAYLYSKACELKESF 207
Query: 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYK 102
GC L Y NG+ V+KDL KA QY SKAC L DQ+ C L K
Sbjct: 208 GCGALAVLYINGQGVEKDLTKADQYISKACKLGDQEACEALKEK 251
Score = 80.9 bits (198), Expect = 2e-15
Identities = 49/106 (46%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 40 NKQKLF----QYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDG 95
NK K F +Y KAC LN G GC LGD Y++GK V+K+L KAAQ Y+KAC L + G
Sbjct: 6 NKAKDFIQAKKYFEKACNLNYGGGCGALGDLYDDGKGVEKNLIKAAQPYTKACELKEGLG 65
Query: 96 CLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDAC---GILNNY 138
C L Y G+GV KN +A + KAC L + C G L Y
Sbjct: 66 CERLWSLYYYGRGVEKNLIKAAQYASKACDLNNGVGCKNLGFLYEY 111
Score = 48.9 bits (115), Expect = 9e-06
Identities = 28/69 (40%), Positives = 36/69 (51%), Gaps = 6/69 (8%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSL----VSNSQINKQ--KLFQYLSKACEL 54
+ G V+KDL K Y KACEL E FGC +L ++ + K K QY+SKAC+L
Sbjct: 180 LYNGQGVEKDLTKVAYLYSKACELKESFGCGALAVLYINGQGVEKDLTKADQYISKACKL 239
Query: 55 NSGNGCRFL 63
C L
Sbjct: 240 GDQEACEAL 248
>gb|AAB63298.1| (AF008565) Orf2 [Helicobacter pylori]
Length = 250
Score = 115 bits (287), Expect = 1e-25
Identities = 68/171 (39%), Positives = 84/171 (48%), Gaps = 40/171 (23%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQ-------KLFQYLSKACELNS 56
G V KDLKKAIQ+Y K+CELN+ +GC +L+ N N Q K QY SKAC+LN
Sbjct: 74 GKGVGKDLKKAIQFYTKSCELNDGYGC-NLLGNLYYNGQGVSKDAKKASQYYSKACDLNH 132
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGY--------------- 101
GC LG + G KDLRKA Y KAC L D GC+ GY
Sbjct: 133 AEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVRY 192
Query: 102 -----------------KQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 135
QY +G K+EKQAV+ F+K C+ G ++AC L
Sbjct: 193 SQACELNDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSGVKEACDAL 243
Score = 114 bits (284), Expect = 2e-25
Identities = 56/131 (42%), Positives = 80/131 (60%), Gaps = 6/131 (4%)
Query: 8 KKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSGNGCR 61
K+D +A ++ KACEL FGC+ L + + K +K Q+ +K+CELN G GC
Sbjct: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELNDGYGCN 101
Query: 62 FLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121
LG+ Y NG+ V KD +KA+QYYSKAC LN +GC++LG + G G K+ ++A+ +E
Sbjct: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
Query: 122 KACRLGSEDAC 132
KAC L C
Sbjct: 162 KACDLKDSPGC 172
Score = 97.1 bits (240), Expect = 3e-20
Identities = 46/91 (50%), Positives = 61/91 (66%)
Query: 47 YLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAG 106
+ KACEL +G GC FLG FYE GK V KDL+KA Q+Y+K+C LND GC +LG Y G
Sbjct: 51 HFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELNDGYGCNLLGNLYYNG 110
Query: 107 KGVVKNEKQAVKTFEKACRLGSEDACGILNN 137
+GV K+ K+A + + KAC L + C +L +
Sbjct: 111 QGVSKDAKKASQYYSKACDLNHAEGCMVLGS 141
Score = 51.6 bits (122), Expect = 1e-06
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 74 KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG 133
K+D +A ++ KAC L + GC+ LG GKGV K+ K+A++ + K+C L C
Sbjct: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELNDGYGCN 101
Query: 134 ILNN 137
+L N
Sbjct: 102 LLGN 105
>gb|AAC24210.1| (AF053708) cysteine-rich protein; HcpA [Helicobacter pylori]
Length = 250
Score = 115 bits (287), Expect = 1e-25
Identities = 68/171 (39%), Positives = 84/171 (48%), Gaps = 40/171 (23%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQ-------KLFQYLSKACELNS 56
G V KDLKKAIQ+Y K+CELN+ +GC +L+ N N Q K QY SKAC+LN
Sbjct: 74 GKGVGKDLKKAIQFYTKSCELNDGYGC-NLLGNLYYNGQGVSKDAKKASQYYSKACDLNH 132
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGY--------------- 101
GC LG + G KDLRKA Y KAC L D GC+ GY
Sbjct: 133 AEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVRY 192
Query: 102 -----------------KQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 135
QY +G K+EKQAV+ F+K C+ G ++AC L
Sbjct: 193 SQACELNDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSGVKEACDAL 243
Score = 114 bits (284), Expect = 2e-25
Identities = 56/131 (42%), Positives = 80/131 (60%), Gaps = 6/131 (4%)
Query: 8 KKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSGNGCR 61
K+D +A ++ KACEL FGC+ L + + K +K Q+ +K+CELN G GC
Sbjct: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELNDGYGCN 101
Query: 62 FLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121
LG+ Y NG+ V KD +KA+QYYSKAC LN +GC++LG + G G K+ ++A+ +E
Sbjct: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
Query: 122 KACRLGSEDAC 132
KAC L C
Sbjct: 162 KACDLKDSPGC 172
Score = 97.1 bits (240), Expect = 3e-20
Identities = 46/91 (50%), Positives = 61/91 (66%)
Query: 47 YLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAG 106
+ KACEL +G GC FLG FYE GK V KDL+KA Q+Y+K+C LND GC +LG Y G
Sbjct: 51 HFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELNDGYGCNLLGNLYYNG 110
Query: 107 KGVVKNEKQAVKTFEKACRLGSEDACGILNN 137
+GV K+ K+A + + KAC L + C +L +
Sbjct: 111 QGVSKDAKKASQYYSKACDLNHAEGCMVLGS 141
Score = 51.6 bits (122), Expect = 1e-06
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 74 KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG 133
K+D +A ++ KAC L + GC+ LG GKGV K+ K+A++ + K+C L C
Sbjct: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKSCELNDGYGCN 101
Query: 134 ILNN 137
+L N
Sbjct: 102 LLGN 105
>ref|NP_222918.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZMM1|HCPA_HELPJ HcpA protein precursor (Cysteine-rich 28 kDa protein)
pir||B71961 hypothetical protein jhp0197 - Helicobacter pylori (strain J99)
gb|AAD05781.1| (AE001458) putative [Helicobacter pylori J99]
Length = 250
Score = 114 bits (286), Expect = 1e-25
Identities = 57/131 (43%), Positives = 80/131 (60%), Gaps = 6/131 (4%)
Query: 8 KKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSGNGCR 61
K+D +A ++ KACEL E FGC+ L + + K +K Q+ +K CELN G GCR
Sbjct: 42 KQDFAQAKAHFEKACELKEGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCR 101
Query: 62 FLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121
LG+ Y NG+ V KD +KA+QYYSK+C LN +GC +LG + G G K+ ++A+ +E
Sbjct: 102 LLGNLYYNGQGVSKDAKKASQYYSKSCELNHAEGCTVLGSLHHYGVGTPKDLRKALDLYE 161
Query: 122 KACRLGSEDAC 132
KAC L C
Sbjct: 162 KACDLKDSPGC 172
Score = 111 bits (278), Expect = 1e-24
Identities = 63/136 (46%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQ-------KLFQYLSKACELNS 56
G V KDLKKAIQ+Y K CELN+ +GC L+ N N Q K QY SK+CELN
Sbjct: 74 GKGVGKDLKKAIQFYTKGCELNDGYGC-RLLGNLYYNGQGVSKDAKKASQYYSKSCELNH 132
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116
GC LG + G KDLRKA Y KAC L D GC+ GY GV KN K+A
Sbjct: 133 AEGCTVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYMY----GVAKNFKEA 188
Query: 117 VKTFEKACRLGSEDAC 132
+ + KAC L C
Sbjct: 189 IVRYSKACELKDGRGC 204
Score = 97.1 bits (240), Expect = 3e-20
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 39 INKQKLFQ---YLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDG 95
+ KQ Q + KACEL G GC FLG FYE GK V KDL+KA Q+Y+K C LND G
Sbjct: 40 VKKQDFAQAKAHFEKACELKEGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYG 99
Query: 96 CLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137
C +LG Y G+GV K+ K+A + + K+C L + C +L +
Sbjct: 100 CRLLGNLYYNGQGVSKDAKKASQYYSKSCELNHAEGCTVLGS 141
>gb|AAL47062.1|AF326614_1 (AF326614) JHP318-like protein [Helicobacter pylori]
Length = 216
Score = 114 bits (286), Expect = 1e-25
Identities = 65/138 (47%), Positives = 82/138 (59%), Gaps = 6/138 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSG 57
G V+K+L KA +Y KAC+LN GC +L + N K Q+ SKACEL G
Sbjct: 76 GRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLIKAAQFYSKACELKDG 135
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
GC+ LG Y NG+ V+KDL KAA YSKAC L + GC LG Y GKGV K+ +A
Sbjct: 136 LGCKDLGTLYYNGEGVEKDLIKAAYLYSKACDLKEGLGCFNLGALYYNGKGVEKDLTKAA 195
Query: 118 KTFEKACRLGSEDACGIL 135
+ KAC+LGS++AC L
Sbjct: 196 YFYSKACKLGSQEACEAL 213
Score = 102 bits (255), Expect = 5e-22
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSG 57
G V+K+L KA +Y KAC+L E GC L S + + N K + SKAC+LN+G
Sbjct: 40 GKGVEKNLIKAAYFYSKACDLKEGMGCKRLGSLYYHGRDVEKNLTKAAYFYSKACDLNNG 99
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
GC LG Y+ G+ V+K+L KAAQ+YSKAC L D GC LG Y G+GV K+ +A
Sbjct: 100 GGCGNLGVLYQKGEGVEKNLIKAAQFYSKACELKDGLGCKDLGTLYYNGEGVEKDLIKAA 159
Query: 118 KTFEKACRLGSEDAC 132
+ KAC L C
Sbjct: 160 YLYSKACDLKEGLGC 174
Score = 92.8 bits (229), Expect = 6e-19
Identities = 54/130 (41%), Positives = 72/130 (54%), Gaps = 6/130 (4%)
Query: 9 KDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSGNGCRF 62
KD +A +Y+ KAC LN GC +L + N K + SKAC+L G GC+
Sbjct: 9 KDYIQAKKYFEKACGLNNGGGCGALGDLYDDGKGVEKNLIKAAYFYSKACDLKEGMGCKR 68
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LG Y +G+ V+K+L KAA +YSKAC LN+ GC LG G+GV KN +A + + K
Sbjct: 69 LGSLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLIKAAQFYSK 128
Query: 123 ACRLGSEDAC 132
AC L C
Sbjct: 129 ACELKDGLGC 138
Score = 87.8 bits (216), Expect = 2e-17
Identities = 44/90 (48%), Positives = 56/90 (61%)
Query: 46 QYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYA 105
+Y KAC LN+G GC LGD Y++GK V+K+L KAA +YSKAC L + GC LG Y
Sbjct: 16 KYFEKACGLNNGGGCGALGDLYDDGKGVEKNLIKAAYFYSKACDLKEGMGCKRLGSLYYH 75
Query: 106 GKGVVKNEKQAVKTFEKACRLGSEDACGIL 135
G+ V KN +A + KAC L + CG L
Sbjct: 76 GRDVEKNLTKAAYFYSKACDLNNGGGCGNL 105
Score = 83.2 bits (204), Expect = 5e-16
Identities = 51/105 (48%), Positives = 64/105 (60%), Gaps = 6/105 (5%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS---NSQINKQKLFQ--YL-SKACELNSG 57
G V+K+L KA Q+Y KACEL + GC L + N + ++ L + YL SKAC+L G
Sbjct: 112 GEGVEKNLIKAAQFYSKACELKDGLGCKDLGTLYYNGEGVEKDLIKAAYLYSKACDLKEG 171
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYK 102
GC LG Y NGK V+KDL KAA +YSKAC L Q+ C L K
Sbjct: 172 LGCFNLGALYYNGKGVEKDLTKAAYFYSKACKLGSQEACEALKEK 216
>ref|NP_207009.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
sp|O25001|HCPA_HELPY HcpA protein precursor (Cysteine-rich 28 kDa protein)
pir||C64546 conserved hypothetical secreted protein HP0211 - Helicobacter
pylori (strain 26695)
gb|AAD07279.1| (AE000541) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 250
Score = 113 bits (283), Expect = 3e-25
Identities = 56/131 (42%), Positives = 79/131 (59%), Gaps = 6/131 (4%)
Query: 8 KKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSGNGCR 61
K+D +A ++ KACEL FGC+ L + + K +K Q+ +K CELN G GC
Sbjct: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
Query: 62 FLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121
LG+ Y NG+ V KD +KA+QYYSKAC LN +GC++LG + G G K+ ++A+ +E
Sbjct: 102 LLGNLYYNGQGVSKDAKKASQYYSKACDLNHAEGCMVLGSLHHYGVGTPKDLRKALDLYE 161
Query: 122 KACRLGSEDAC 132
KAC L C
Sbjct: 162 KACDLKDSPGC 172
Score = 112 bits (280), Expect = 7e-25
Identities = 67/171 (39%), Positives = 82/171 (47%), Gaps = 40/171 (23%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQ-------KLFQYLSKACELNS 56
G V KDLKKAIQ+Y K CELN+ +GC +L+ N N Q K QY SKAC+LN
Sbjct: 74 GKGVGKDLKKAIQFYTKGCELNDGYGC-NLLGNLYYNGQGVSKDAKKASQYYSKACDLNH 132
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGY--------------- 101
GC LG + G KDLRKA Y KAC L D GC+ GY
Sbjct: 133 AEGCMVLGSLHHYGVGTPKDLRKALDLYEKACDLKDSPGCINAGYIYSVTKNFKEAIVRY 192
Query: 102 -----------------KQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 135
QY +G K+EKQAV+ F+K C+ ++AC L
Sbjct: 193 SKACELKDGRGCYNLGVMQYNAQGTAKDEKQAVENFKKGCKSSVKEACDAL 243
Score = 96.7 bits (239), Expect = 4e-20
Identities = 46/91 (50%), Positives = 60/91 (65%)
Query: 47 YLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAG 106
+ KACEL +G GC FLG FYE GK V KDL+KA Q+Y+K C LND GC +LG Y G
Sbjct: 51 HFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCNLLGNLYYNG 110
Query: 107 KGVVKNEKQAVKTFEKACRLGSEDACGILNN 137
+GV K+ K+A + + KAC L + C +L +
Sbjct: 111 QGVSKDAKKASQYYSKACDLNHAEGCMVLGS 141
Score = 51.2 bits (121), Expect = 2e-06
Identities = 24/64 (37%), Positives = 36/64 (55%)
Query: 74 KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG 133
K+D +A ++ KAC L + GC+ LG GKGV K+ K+A++ + K C L C
Sbjct: 42 KQDFAQAKTHFEKACELKNGFGCVFLGAFYEEGKGVGKDLKKAIQFYTKGCELNDGYGCN 101
Query: 134 ILNN 137
+L N
Sbjct: 102 LLGN 105
>gb|AAM66149.1|AF326628_1 (AF326628) JHP1437-like protein [Helicobacter pylori]
Length = 310
Score = 112 bits (279), Expect = 9e-25
Identities = 55/136 (40%), Positives = 84/136 (61%), Gaps = 8/136 (5%)
Query: 10 DLKKAIQYYVKACELNEMFGCL-------SLVSNSQINKQKLFQYLSKACELNSGNGCRF 62
DLK A++YY K+C+LN + GC+ ++ + +K+ L +Y SKACELN G+GC
Sbjct: 117 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDL-EYYSKACELNYGDGCAI 175
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LGD Y NG+ V ++ +KA +YYSKAC LN+ +GC LG + G+ V ++ K+A + K
Sbjct: 176 LGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFLGESVTQDLKKAFGYYSK 235
Query: 123 ACRLGSEDACGILNNY 138
AC L C ++ +
Sbjct: 236 ACELNEALTCTLVGEF 251
Score = 102 bits (254), Expect = 7e-22
Identities = 61/132 (46%), Positives = 78/132 (58%), Gaps = 7/132 (5%)
Query: 7 VKKDLKKAIQYYVKACELNEMFGCLSL---VSNSQ---INKQKLFQYLSKACELNSGNGC 60
+KKD KK ++YY KACELN GC L N + N +K F+Y SKACELN+G GC
Sbjct: 151 LKKD-KKDLEYYSKACELNYGDGCAILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGC 209
Query: 61 RFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTF 120
LG Y G+ V +DL+KA YYSKAC LN+ C ++G G+GV K+ K+A +
Sbjct: 210 SKLGGDYFLGESVTQDLKKAFGYYSKACELNEALTCTLVGEFYRDGEGVTKDLKKAFEYS 269
Query: 121 EKACRLGSEDAC 132
KAC L C
Sbjct: 270 AKACELNDAKGC 281
Score = 91.3 bits (225), Expect = 2e-18
Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSG 57
G V ++ KKA +YY KACELN GC L + + + +K F Y SKACELN
Sbjct: 183 GEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFLGESVTQDLKKAFGYYSKACELNEA 242
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
C +G+FY +G+ V KDL+KA +Y +KAC LND GC L K + + + +
Sbjct: 243 LTCTLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYALAAFLMGVKALQRVKSKRP 302
Query: 118 KTFEK 122
KT ++
Sbjct: 303 KTLKR 307
Score = 82.4 bits (202), Expect = 8e-16
Identities = 56/171 (32%), Positives = 77/171 (44%), Gaps = 45/171 (26%)
Query: 9 KDLKKAIQYYVKACELNEMFGCLSL-----------VSNSQINK---------------- 41
KD +A +Y+ KAC LN+ GC L + I K
Sbjct: 43 KDFTRAKEYFEKACRLNDADGCAILREAYSKVILKGSARESIEKALEHTATAKACKSNDA 102
Query: 42 ----------------QKLFQYLSKACELNSGNGCRFLGDFYENG-KYVKKDLRKAAQYY 84
+ +Y SK+C+LN+ GC FY + K +KKD +K +YY
Sbjct: 103 EKCKDLAEFYFNANDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD-KKDLEYY 161
Query: 85 SKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 135
SKAC LN DGC ILG + G+GV +N K+A K + KAC L + + C L
Sbjct: 162 SKACELNYGDGCAILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKL 212
Score = 43.5 bits (101), Expect = 4e-04
Identities = 26/66 (39%), Positives = 33/66 (49%), Gaps = 5/66 (7%)
Query: 72 YVKKDLRKAAQYYSKACGLNDQDGCLIL--GYKQYAGKGVVKN--EKQAVKT-FEKACRL 126
Y KD +A +Y+ KAC LND DGC IL Y + KG + EK T KAC+
Sbjct: 40 YTDKDFTRAKEYFEKACRLNDADGCAILREAYSKVILKGSARESIEKALEHTATAKACKS 99
Query: 127 GSEDAC 132
+ C
Sbjct: 100 NDAEKC 105
>gb|AAM66155.1|AF326633_1 (AF326633) JHP1437-like protein [Helicobacter pylori]
Length = 336
Score = 111 bits (278), Expect = 1e-24
Identities = 55/136 (40%), Positives = 84/136 (61%), Gaps = 8/136 (5%)
Query: 10 DLKKAIQYYVKACELNEMFGCL-------SLVSNSQINKQKLFQYLSKACELNSGNGCRF 62
DLK A++YY K+C+LN + GC+ ++ + +K+ L +Y SKACELN G+GC
Sbjct: 119 DLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDL-EYYSKACELNYGDGCAI 177
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LGD Y NG+ V ++ +KA +YYSKAC LN+ +GC LG + G+ V ++ K+A + K
Sbjct: 178 LGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFFGESVTQDLKKAFGYYSK 237
Query: 123 ACRLGSEDACGILNNY 138
AC L C ++ +
Sbjct: 238 ACELNEALTCTLVGEF 253
Score = 111 bits (277), Expect = 2e-24
Identities = 59/130 (45%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSG 57
G V ++ KKA +YY KACELN GC L + + +K F Y SKACELN
Sbjct: 185 GEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFFGESVTQDLKKAFGYYSKACELNEA 244
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
C +G+FY +G+ V KDL+KA +Y +KAC LND GC L GKGV + EKQ
Sbjct: 245 LTCTLVGEFYRDGEGVTKDLKKAFEYSAKACELNDAKGCYSLAAFFNEGKGVARGEKQMT 304
Query: 118 KTFEKACRLG 127
+ EK+C+LG
Sbjct: 305 ENLEKSCKLG 314
Score = 102 bits (254), Expect = 7e-22
Identities = 61/132 (46%), Positives = 78/132 (58%), Gaps = 7/132 (5%)
Query: 7 VKKDLKKAIQYYVKACELNEMFGCLSL---VSNSQ---INKQKLFQYLSKACELNSGNGC 60
+KKD KK ++YY KACELN GC L N + N +K F+Y SKACELN+G GC
Sbjct: 153 LKKD-KKDLEYYSKACELNYGDGCAILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGC 211
Query: 61 RFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTF 120
LG Y G+ V +DL+KA YYSKAC LN+ C ++G G+GV K+ K+A +
Sbjct: 212 SKLGGDYFFGESVTQDLKKAFGYYSKACELNEALTCTLVGEFYRDGEGVTKDLKKAFEYS 271
Query: 121 EKACRLGSEDAC 132
KAC L C
Sbjct: 272 AKACELNDAKGC 283
Score = 83.6 bits (205), Expect = 3e-16
Identities = 56/171 (32%), Positives = 79/171 (45%), Gaps = 45/171 (26%)
Query: 9 KDLKKAIQYYVKACELNEMFGCLSL-----------VSNSQINK---------------- 41
KD +A +Y+ KACEL++ GC+ L + I K
Sbjct: 45 KDFTRAKEYFEKACELHDADGCIILRETYSKVILKGSAKESIEKAIEHIATAKACKSNDA 104
Query: 42 ----------------QKLFQYLSKACELNSGNGCRFLGDFYENG-KYVKKDLRKAAQYY 84
+ +Y SK+C+LN+ GC FY + K +KKD +K +YY
Sbjct: 105 EKCKDLAEFYFNANDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKD-KKDLEYY 163
Query: 85 SKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 135
SKAC LN DGC ILG + G+GV +N K+A K + KAC L + + C L
Sbjct: 164 SKACELNYGDGCAILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKL 214
Score = 43.1 bits (100), Expect = 5e-04
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 72 YVKKDLRKAAQYYSKACGLNDQDGCLIL--GYKQYAGKGVVKNE-KQAVK--TFEKACRL 126
Y KD +A +Y+ KAC L+D DGC+IL Y + KG K ++A++ KAC+
Sbjct: 42 YTDKDFTRAKEYFEKACELHDADGCIILRETYSKVILKGSAKESIEKAIEHIATAKACKS 101
Query: 127 GSEDAC 132
+ C
Sbjct: 102 NDAEKC 107
>gb|AAL47059.1|AF326610_1 (AF326610) JHP318-like protein [Helicobacter pylori]
Length = 213
Score = 107 bits (267), Expect = 2e-23
Identities = 61/135 (45%), Positives = 79/135 (58%), Gaps = 6/135 (4%)
Query: 7 VKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSGNGC 60
V+K+L KA +Y KAC+L E GC L S + + N K + SKAC+LN+G GC
Sbjct: 40 VEKNLIKAAYFYSKACDLKEGMGCKRLGSLYYHGRDVEKNLTKAAYFYSKACDLNNGGGC 99
Query: 61 RFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTF 120
LG Y+ G+ V+K+L KAAQ+YSKAC L D GC LG Y G+GV K+ +A +
Sbjct: 100 GNLGVLYQKGEGVEKNLIKAAQFYSKACELKDGLGCKDLGTLYYNGEGVEKDLIKAAYLY 159
Query: 121 EKACRLGSEDACGIL 135
KAC L CG L
Sbjct: 160 SKACELKESFGCGAL 174
Score = 106 bits (265), Expect = 4e-23
Identities = 62/138 (44%), Positives = 79/138 (56%), Gaps = 6/138 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSG 57
G V+K+L KA +Y KAC+LN GC +L + N K Q+ SKACEL G
Sbjct: 73 GRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLIKAAQFYSKACELKDG 132
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
GC+ LG Y NG+ V+KDL KAA YSKAC L + GC L G+GV KN +A
Sbjct: 133 LGCKDLGTLYYNGEGVEKDLIKAAYLYSKACELKESFGCGALAVLYINGQGVEKNLIKAD 192
Query: 118 KTFEKACRLGSEDACGIL 135
+ KAC+LG ++AC L
Sbjct: 193 QYISKACKLGDQEACEAL 210
Score = 97.1 bits (240), Expect = 3e-20
Identities = 54/128 (42%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 8 KKDLKKAIQYYVKACELNEMFGCLSL---VSNSQINKQKLFQYLSKACELNSGNGCRFLG 64
K+D KA +Y+ KAC+L GC +L + + N K + SKAC+L G GC+ LG
Sbjct: 8 KQDFSKARKYFEKACDLKYGGGCGALGDLYDDVEKNLIKAAYFYSKACDLKEGMGCKRLG 67
Query: 65 DFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124
Y +G+ V+K+L KAA +YSKAC LN+ GC LG G+GV KN +A + + KAC
Sbjct: 68 SLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNLGVLYQKGEGVEKNLIKAAQFYSKAC 127
Query: 125 RLGSEDAC 132
L C
Sbjct: 128 ELKDGLGC 135
Score = 79.0 bits (193), Expect = 9e-15
Identities = 43/105 (40%), Positives = 60/105 (56%), Gaps = 3/105 (2%)
Query: 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90
+ ++S + + K +Y KAC+L G GC LGD Y++ V+K+L KAA +YSKAC L
Sbjct: 1 MGMLSYDKQDFSKARKYFEKACDLKYGGGCGALGDLYDD---VEKNLIKAAYFYSKACDL 57
Query: 91 NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 135
+ GC LG Y G+ V KN +A + KAC L + CG L
Sbjct: 58 KEGMGCKRLGSLYYHGRDVEKNLTKAAYFYSKACDLNNGGGCGNL 102
Score = 76.3 bits (186), Expect = 6e-14
Identities = 49/105 (46%), Positives = 62/105 (58%), Gaps = 6/105 (5%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS---NSQINKQKLFQ--YL-SKACELNSG 57
G V+K+L KA Q+Y KACEL + GC L + N + ++ L + YL SKACEL
Sbjct: 109 GEGVEKNLIKAAQFYSKACELKDGLGCKDLGTLYYNGEGVEKDLIKAAYLYSKACELKES 168
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYK 102
GC L Y NG+ V+K+L KA QY SKAC L DQ+ C L K
Sbjct: 169 FGCGALAVLYINGQGVEKNLIKADQYISKACKLGDQEACEALKEK 213
>gb|AAL47060.1|AF326611_1 (AF326611) JHP318-like protein [Helicobacter pylori]
Length = 131
Score = 103 bits (256), Expect = 4e-22
Identities = 59/122 (48%), Positives = 75/122 (61%), Gaps = 6/122 (4%)
Query: 9 KDLKKAIQYYVKACELNEMFGCLSL---VSNSQ---INKQKLFQYLSKACELNSGNGCRF 62
KD +A +Y+ KAC LN GC SL N Q N K+ + SKAC+LN+G GC+
Sbjct: 9 KDFTQAKKYFEKACNLNYGRGCGSLGDLYENDQGVEKNLTKVAYFYSKACDLNNGVGCKN 68
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LG YE G+ V+KDL KA QY SKAC LN+ GC +LG+ +GKGV KN +A + K
Sbjct: 69 LGFLYEYGEGVEKDLIKATQYASKACDLNNGSGCDVLGFLYGSGKGVEKNLTKAAYFYSK 128
Query: 123 AC 124
AC
Sbjct: 129 AC 130
Score = 85.5 bits (210), Expect = 9e-17
Identities = 46/100 (46%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 40 NKQKLF----QYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDG 95
NK K F +Y KAC LN G GC LGD YEN + V+K+L K A +YSKAC LN+ G
Sbjct: 6 NKAKDFTQAKKYFEKACNLNYGRGCGSLGDLYENDQGVEKNLTKVAYFYSKACDLNNGVG 65
Query: 96 CLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 135
C LG+ G+GV K+ +A + KAC L + C +L
Sbjct: 66 CKNLGFLYEYGEGVEKDLIKATQYASKACDLNNGSGCDVL 105
Score = 77.4 bits (189), Expect = 2e-14
Identities = 42/88 (47%), Positives = 55/88 (61%), Gaps = 6/88 (6%)
Query: 7 VKKDLKKAIQYYVKACELNEMFGCLSL----VSNSQINKQ--KLFQYLSKACELNSGNGC 60
V+K+L K +Y KAC+LN GC +L + K K QY SKAC+LN+G+GC
Sbjct: 43 VEKNLTKVAYFYSKACDLNNGVGCKNLGFLYEYGEGVEKDLIKATQYASKACDLNNGSGC 102
Query: 61 RFLGDFYENGKYVKKDLRKAAQYYSKAC 88
LG Y +GK V+K+L KAA +YSKAC
Sbjct: 103 DVLGFLYGSGKGVEKNLTKAAYFYSKAC 130
>gb|AAL47058.1|AF326608_1 (AF326608) JHP318-like protein [Helicobacter pylori]
Length = 215
Score = 102 bits (253), Expect = 9e-22
Identities = 58/134 (43%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 8 KKDLKKAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSGNGCR 61
K+D KA +Y+ +AC LN GC +L + N K Q+ SKACEL G GC
Sbjct: 43 KQDFSKARKYFERACGLNNGRGCNNLGVLYRDGQGVEKNLTKAAQFYSKACELKDGGGCG 102
Query: 62 FLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121
LG Y+ G+ V+K+L KAAQ+YSKAC L D GC LG G+ V KN +A +
Sbjct: 103 NLGVLYQKGEVVEKNLTKAAQFYSKACELKDGGGCGNLGVLYQKGEVVEKNLTKAAYLYS 162
Query: 122 KACRLGSEDACGIL 135
KAC L CG L
Sbjct: 163 KACELKESFGCGAL 176
Score = 101 bits (251), Expect = 2e-21
Identities = 58/134 (43%), Positives = 78/134 (57%), Gaps = 6/134 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSL---VSNSQI---NKQKLFQYLSKACELNSG 57
G V+K+L KA Q+Y KACEL + GC +L ++ N K Q+ SKACEL G
Sbjct: 75 GQGVEKNLTKAAQFYSKACELKDGGGCGNLGVLYQKGEVVEKNLTKAAQFYSKACELKDG 134
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
GC LG Y+ G+ V+K+L KAA YSKAC L + GC L G+GV K+ +A
Sbjct: 135 GGCGNLGVLYQKGEVVEKNLTKAAYLYSKACELKESFGCGALAVLYINGQGVEKDLTKAD 194
Query: 118 KTFEKACRLGSEDA 131
+ KAC+LG ++A
Sbjct: 195 QYISKACKLGDQEA 208
Score = 85.1 bits (209), Expect = 1e-16
Identities = 45/105 (42%), Positives = 61/105 (57%)
Query: 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90
L ++S + + K +Y +AC LN+G GC LG Y +G+ V+K+L KAAQ+YSKAC L
Sbjct: 36 LGMLSYDKQDFSKARKYFERACGLNNGRGCNNLGVLYRDGQGVEKNLTKAAQFYSKACEL 95
Query: 91 NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 135
D GC LG G+ V KN +A + + KAC L CG L
Sbjct: 96 KDGGGCGNLGVLYQKGEVVEKNLTKAAQFYSKACELKDGGGCGNL 140
>ref|NP_222941.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71958 hypothetical protein jhp0220 - Helicobacter pylori (strain J99)
gb|AAD05807.1| (AE001460) putative [Helicobacter pylori J99]
Length = 355
Score = 95.9 bits (237), Expect = 7e-20
Identities = 51/133 (38%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 7 VKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKL-------FQYLSKACELNSGNG 59
VK+ KA+ YY+KAC LNE C +L S + L F YL KAC LN+ G
Sbjct: 182 VKQSNHKAVIYYLKACRLNEGQACRALGSLFENGDAGLDEDFEVAFDYLQKACALNNSGG 241
Query: 60 CRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKT 119
C LG Y G+YVKKD +KA Y+ +AC + C +G+ G V K+ ++A+
Sbjct: 242 CASLGSMYMLGRYVKKDPQKAFNYFKQACDMGSAVSCSRMGFMYSQGDTVSKDLRKALDN 301
Query: 120 FEKACRLGSEDAC 132
+E+ C +G E C
Sbjct: 302 YERGCDMGDEVGC 314
Score = 90.1 bits (222), Expect = 4e-18
Identities = 47/136 (34%), Positives = 68/136 (49%), Gaps = 10/136 (7%)
Query: 3 GGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNS 56
G + +D + A Y KAC LN GC SL S + + QK F Y +AC++ S
Sbjct: 215 GDAGLDEDFEVAFDYLQKACALNNSGGCASLGSMYMLGRYVKKDPQKAFNYFKQACDMGS 274
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116
C +G Y G V KDLRKA Y + C + D+ GC L Y +K+++ A
Sbjct: 275 AVSCSRMGFMYSQGDTVSKDLRKALDNYERGCDMGDEVGCFALAGMYYN----MKDKENA 330
Query: 117 VKTFEKACRLGSEDAC 132
+ ++K C+LG + AC
Sbjct: 331 IMIYDKGCKLGMKQAC 346
Score = 73.2 bits (178), Expect = 5e-13
Identities = 35/93 (37%), Positives = 49/93 (52%)
Query: 40 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
N K Y KAC GC LG YENG+ + D +KA +YY AC +D++GC L
Sbjct: 42 NYSKAASYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGL 101
Query: 100 GYKQYAGKGVVKNEKQAVKTFEKACRLGSEDAC 132
G G G +N ++A+ + KAC L ++C
Sbjct: 102 GGLYDEGLGTAQNYQEAIDAYAKACVLKHPESC 134
Score = 69.7 bits (169), Expect = 5e-12
Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 3 GGGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNS 56
G GT + D KKA++YY AC+ ++ GC L + N Q+ +KAC L
Sbjct: 72 GQGT-RIDYKKALEYYKTACQADDREGCFGLGGLYDEGLGTAQNYQEAIDAYAKACVLKH 130
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVK-NEKQ 115
C LG Y+ + +K + +A YY K+C + GC ILG G VK + +
Sbjct: 131 PESCYNLGIIYD--RKIKGNAAQAVTYYQKSCNFDMAKGCYILGTAYEKGFLEVKQSNHK 188
Query: 116 AVKTFEKACRLGSEDACGILNN 137
AV + KACRL AC L +
Sbjct: 189 AVIYYLKACRLNEGQACRALGS 210
Score = 62.4 bits (150), Expect = 8e-10
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 13 KAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSGNGCRFLGDF 66
KA Y+ KAC GC L ++I+ +K +Y AC+ + GC LG
Sbjct: 45 KAASYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGLGGL 104
Query: 67 YENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126
Y+ G ++ ++A Y+KAC L + C LG + + N QAV ++K+C
Sbjct: 105 YDEGLGTAQNYQEAIDAYAKACVLKHPESCYNLGI--IYDRKIKGNAAQAVTYYQKSCNF 162
Query: 127 GSEDACGIL 135
C IL
Sbjct: 163 DMAKGCYIL 171
Score = 41.2 bits (95), Expect = 0.002
Identities = 21/66 (31%), Positives = 34/66 (50%), Gaps = 5/66 (7%)
Query: 67 YENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126
Y++G Y KAA Y+ KAC +GC LG G+G + K+A++ ++ AC+
Sbjct: 38 YKSGNY-----SKAASYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQA 92
Query: 127 GSEDAC 132
+ C
Sbjct: 93 DDREGC 98
>ref|NP_207033.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||C64549 conserved hypothetical secreted protein HP0235 - Helicobacter
pylori (strain 26695)
gb|AAD07303.1| (AE000543) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 355
Score = 91.7 bits (226), Expect = 1e-18
Identities = 48/133 (36%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 7 VKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKL-------FQYLSKACELNSGNG 59
VK+ KA+ YY+KAC L++ C +L S + L F YL KAC LN+ G
Sbjct: 182 VKQSNHKAVIYYLKACRLDDGQACRALGSLFENGDAGLDEDFEVAFDYLQKACGLNNSGG 241
Query: 60 CRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKT 119
C LG Y G+YVKKD +KA ++ +AC + C +G+ G V K+ ++A+
Sbjct: 242 CASLGSMYMLGRYVKKDPQKAFNFFKQACDMGSAVSCSRMGFMYSQGDAVPKDLRKALDN 301
Query: 120 FEKACRLGSEDAC 132
+E+ C +G E C
Sbjct: 302 YERGCDMGDEVGC 314
Score = 87.8 bits (216), Expect = 2e-17
Identities = 46/136 (33%), Positives = 68/136 (49%), Gaps = 10/136 (7%)
Query: 3 GGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNS 56
G + +D + A Y KAC LN GC SL S + + QK F + +AC++ S
Sbjct: 215 GDAGLDEDFEVAFDYLQKACGLNNSGGCASLGSMYMLGRYVKKDPQKAFNFFKQACDMGS 274
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 116
C +G Y G V KDLRKA Y + C + D+ GC L Y +K+++ A
Sbjct: 275 AVSCSRMGFMYSQGDAVPKDLRKALDNYERGCDMGDEVGCFALAGMYYN----MKDKENA 330
Query: 117 VKTFEKACRLGSEDAC 132
+ ++K C+LG + AC
Sbjct: 331 IMIYDKGCKLGMKQAC 346
Score = 73.2 bits (178), Expect = 5e-13
Identities = 35/93 (37%), Positives = 49/93 (52%)
Query: 40 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
N K Y KAC GC LG YENG+ + D +KA +YY AC +D++GC L
Sbjct: 42 NYSKATSYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGL 101
Query: 100 GYKQYAGKGVVKNEKQAVKTFEKACRLGSEDAC 132
G G G +N ++A+ + KAC L ++C
Sbjct: 102 GGLYDEGLGTTQNYQEAIDAYAKACVLKHPESC 134
Score = 68.9 bits (167), Expect = 9e-12
Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 3 GGGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNS 56
G GT + D KKA++YY AC+ ++ GC L + N Q+ +KAC L
Sbjct: 72 GQGT-RIDYKKALEYYKTACQADDREGCFGLGGLYDEGLGTTQNYQEAIDAYAKACVLKH 130
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVK-NEKQ 115
C LG Y+ + +K + +A YY K+C + GC +LG G VK + +
Sbjct: 131 PESCYNLGIIYD--RKIKGNADQAVTYYQKSCNFDMAKGCYVLGVAYEKGFLEVKQSNHK 188
Query: 116 AVKTFEKACRLGSEDACGILNN 137
AV + KACRL AC L +
Sbjct: 189 AVIYYLKACRLDDGQACRALGS 210
Score = 62.0 bits (149), Expect = 1e-09
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 13 KAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSGNGCRFLGDF 66
KA Y+ KAC GC L ++I+ +K +Y AC+ + GC LG
Sbjct: 45 KATSYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQADDREGCFGLGGL 104
Query: 67 YENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126
Y+ G ++ ++A Y+KAC L + C LG + + N QAV ++K+C
Sbjct: 105 YDEGLGTTQNYQEAIDAYAKACVLKHPESCYNLGI--IYDRKIKGNADQAVTYYQKSCNF 162
Query: 127 GSEDACGIL 135
C +L
Sbjct: 163 DMAKGCYVL 171
Score = 39.7 bits (91), Expect = 0.006
Identities = 20/66 (30%), Positives = 33/66 (49%), Gaps = 5/66 (7%)
Query: 67 YENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126
Y++G Y KA Y+ KAC +GC LG G+G + K+A++ ++ AC+
Sbjct: 38 YKSGNY-----SKATSYFKKACNDGVSEGCTQLGIIYENGQGTRIDYKKALEYYKTACQA 92
Query: 127 GSEDAC 132
+ C
Sbjct: 93 DDREGC 98
>ref|NP_222869.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71968 hypothetical protein jhp0148 - Helicobacter pylori (strain J99)
gb|AAD05729.1| (AE001453) putative [Helicobacter pylori J99]
Length = 305
Score = 90.5 bits (223), Expect = 3e-18
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSG 57
G V+KD KAI YY + C L C SL + + N K + AC LN G
Sbjct: 109 GDGVQKDFPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALSFSKYACSLNYG 168
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
C F+G Y++ K V+KDL+KA + + C L D C+ LGY AG V +NE+QA+
Sbjct: 169 ISCNFVGYMYKSAKGVEKDLKKALANFKRGCHLKDGASCVSLGYLYEAGMDVKQNEEQAL 228
Query: 118 KTFEKACRLGSEDAC 132
++K C L C
Sbjct: 229 NLYKKGCSLKEGSGC 243
Score = 77.8 bits (190), Expect = 2e-14
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSG 57
G V +++ KA+ YY + C L C SL S Q + K Y + C L G
Sbjct: 73 GDGVDQNISKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKDFPKAIYYYRRGCHLKGG 132
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
C LG Y NG VK++ KA + AC LN C +GY + KGV K+ K+A+
Sbjct: 133 VSCGSLGFMYFNGTGVKQNYAKALSFSKYACSLNYGISCNFVGYMYKSAKGVEKDLKKAL 192
Query: 118 KTFEKACRLGSEDAC 132
F++ C L +C
Sbjct: 193 ANFKRGCHLKDGASC 207
Score = 72.8 bits (177), Expect = 6e-13
Identities = 42/132 (31%), Positives = 61/132 (45%), Gaps = 6/132 (4%)
Query: 10 DLKKAIQYYVKACELNEMFGCLSLVSNSQI------NKQKLFQYLSKACELNSGNGCRFL 63
D +A+ +Y ++C L GC SL S + N K Y + C L + C L
Sbjct: 43 DYHRAVAFYKRSCNLRMGVGCTSLGSMYEYGDGVDQNISKAVFYYRRGCNLRNHLACASL 102
Query: 64 GDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123
G YE+G V+KD KA YY + C L C LG+ + G GV +N +A+ + A
Sbjct: 103 GSMYEDGDGVQKDFPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALSFSKYA 162
Query: 124 CRLGSEDACGIL 135
C L +C +
Sbjct: 163 CSLNYGISCNFV 174
Score = 39.7 bits (91), Expect = 0.006
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 76 DLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 135
D +A +Y ++C L GC LG G GV +N +AV + + C L + AC L
Sbjct: 43 DYHRAVAFYKRSCNLRMGVGCTSLGSMYEYGDGVDQNISKAVFYYRRGCNLRNHLACASL 102
Query: 136 NN 137
+
Sbjct: 103 GS 104
>ref|NP_206959.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||H64539 conserved hypothetical secreted protein HP0160 - Helicobacter
pylori (strain 26695)
gb|AAD07230.1| (AE000537) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 306
Score = 85.9 bits (211), Expect = 7e-17
Identities = 53/135 (39%), Positives = 69/135 (50%), Gaps = 6/135 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSL---VSNSQINKQKLFQ--YLSK-ACELNSG 57
G V+K+L KAI YY + C L C SL N KQ + +LSK AC LN G
Sbjct: 109 GDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYG 168
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
C F+G Y N K V+KDL+KA + + C L D C+ LGY G V +N +QA+
Sbjct: 169 ISCNFVGYMYRNAKGVQKDLKKALANFKRGCHLKDGASCVSLGYMYEVGMDVKQNGEQAL 228
Query: 118 KTFEKACRLGSEDAC 132
++K C L C
Sbjct: 229 NLYKKGCYLKRGSGC 243
Score = 75.9 bits (185), Expect = 7e-14
Identities = 46/135 (34%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELNSG 57
G V +++ KA+ YY + C L C SL S Q N K Y + C L G
Sbjct: 73 GDGVDQNITKAVFYYRRGCNLRNHLACASLGSMYEDGDGVQKNLPKAIYYYRRGCHLKGG 132
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
C LG Y NG VK++ KA AC LN C +GY KGV K+ K+A+
Sbjct: 133 VSCGSLGFMYFNGTGVKQNYAKALFLSKYACSLNYGISCNFVGYMYRNAKGVQKDLKKAL 192
Query: 118 KTFEKACRLGSEDAC 132
F++ C L +C
Sbjct: 193 ANFKRGCHLKDGASC 207
Score = 71.6 bits (174), Expect = 1e-12
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 10 DLKKAIQYYVKACELNEMFGCLSLVSNSQI------NKQKLFQYLSKACELNSGNGCRFL 63
D KA+ +Y ++C L GC SL S + N K Y + C L + C L
Sbjct: 43 DYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLACASL 102
Query: 64 GDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123
G YE+G V+K+L KA YY + C L C LG+ + G GV +N +A+ + A
Sbjct: 103 GSMYEDGDGVQKNLPKAIYYYRRGCHLKGGVSCGSLGFMYFNGTGVKQNYAKALFLSKYA 162
Query: 124 CRLGSEDACGIL 135
C L +C +
Sbjct: 163 CSLNYGISCNFV 174
Score = 40.8 bits (94), Expect = 0.003
Identities = 21/66 (31%), Positives = 32/66 (47%)
Query: 72 YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDA 131
+ + D KA +Y ++C L GC LG G GV +N +AV + + C L + A
Sbjct: 39 FKRGDYHKAVAFYKRSCNLRVGVGCTSLGSMYEDGDGVDQNITKAVFYYRRGCNLRNHLA 98
Query: 132 CGILNN 137
C L +
Sbjct: 99 CASLGS 104
>ref|NP_281603.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||C81385 probable periplasmic protein Cj0413 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB74249.1| (AL139075) putative periplasmic protein [Campylobacter jejuni]
Length = 234
Score = 70.9 bits (172), Expect = 2e-12
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 7 VKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLG 64
V KDL +A ++Y KAC+L C ++L+ +Q + + +KAC L C +
Sbjct: 64 VSKDLNQAYKFYDKACKLGLANACSNMALLLQNQGYENEALLAFNKACTLGESLSCNNIA 123
Query: 65 DFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124
FYE +KD + A+ +Y ++C L + C LG G+ V + K A+ + K+C
Sbjct: 124 LFYEK----EKDGQMASSFYKRSCDLKNARACYQLGSLYDKGELVKASVKSALAFYSKSC 179
Query: 125 RLGSEDACGILNNY 138
LG +AC +L Y
Sbjct: 180 TLGFGEACYLLGRY 193
Score = 63.5 bits (153), Expect = 4e-10
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 13 KAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENG 70
+A+ + KAC L E C ++L + + Q + ++C+L + C LG Y+ G
Sbjct: 102 EALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDKG 161
Query: 71 KYVKKDLRKAAQYYSKACGLNDQDGCLILG-YKQYAGKGVVKNEKQAVKTFEKACRLGSE 129
+ VK ++ A +YSK+C L + C +LG Y Q + + K A + F AC +
Sbjct: 162 ELVKASVKSALAFYSKSCTLGFGEACYLLGRYNQLEKQDLTK----AKRYFGMACDQKHQ 217
Query: 130 DAC 132
+AC
Sbjct: 218 EAC 220
Score = 48.9 bits (115), Expect = 9e-06
Identities = 29/94 (30%), Positives = 44/94 (45%), Gaps = 12/94 (12%)
Query: 43 KLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGC----LI 98
K ++ CE + C L +E+ + V KDL +A ++Y KAC L + C L+
Sbjct: 34 KAYEIFKSLCEKDISKACFSLAFMHESARGVSKDLNQAYKFYDKACKLGLANACSNMALL 93
Query: 99 LGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDAC 132
L + Y E +A+ F KAC LG +C
Sbjct: 94 LQNQGY--------ENEALLAFNKACTLGESLSC 119
Score = 41.2 bits (95), Expect = 0.002
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 72 YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDA 131
Y KA + + C + C L + + +GV K+ QA K ++KAC+LG +A
Sbjct: 27 YEANKFDKAYEIFKSLCEKDISKACFSLAFMHESARGVSKDLNQAYKFYDKACKLGLANA 86
Query: 132 C 132
C
Sbjct: 87 C 87
>gb|AAL47063.1|AF326616_1 (AF326616) JHP1024-like protein [Helicobacter pylori]
Length = 122
Score = 65.5 bits (158), Expect = 1e-10
Identities = 34/74 (45%), Positives = 42/74 (55%)
Query: 43 KLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYK 102
K +Y KACEL G GC LG Y G+ V+KD +KA + KAC LN+ GC LG
Sbjct: 48 KAKKYFEKACELKDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGGCGTLGML 107
Query: 103 QYAGKGVVKNEKQA 116
G+GV KN +A
Sbjct: 108 YEFGQGVEKNLTKA 121
Score = 62.0 bits (149), Expect = 1e-09
Identities = 31/64 (48%), Positives = 37/64 (57%)
Query: 72 YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDA 131
Y KD KA +Y+ KAC L D GC LG Y G+GV K+ K+A FEKAC L +
Sbjct: 41 YKAKDYIKAKKYFEKACELKDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGG 100
Query: 132 CGIL 135
CG L
Sbjct: 101 CGTL 104
Score = 56.2 bits (134), Expect = 6e-08
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 9 KDLKKAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSGNGCRF 62
KD KA +Y+ KACEL + GC +L + + +K F KAC+LN+ GC
Sbjct: 44 KDYIKAKKYFEKACELKDGGGCFNLGRLYYYGEGVEKDFKKAFALFEKACDLNNSGGCGT 103
Query: 63 LGDFYENGKYVKKDLRKA 80
LG YE G+ V+K+L KA
Sbjct: 104 LGMLYEFGQGVEKNLTKA 121
>gb|EAA06387.1| (AAAB01008846) agCP13101 [Anopheles gambiae str. PEST]
Length = 849
Score = 65.5 bits (158), Expect = 1e-10
Identities = 43/132 (32%), Positives = 65/132 (48%), Gaps = 7/132 (5%)
Query: 3 GGGTVKKDLKKAIQYYVKACELNEMFGCLSL-------VSNSQINKQKLFQYLSKACELN 55
GG + D ++A+QY+ +A L N + + + F+Y KA +L
Sbjct: 390 GGRGIPLDHQRALQYFSQAANAGNAVAMAFLGKIYLEGSDNIKADNETAFKYFKKAADLG 449
Query: 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ 115
+ G LG Y +GK V+KD KA +Y++KA DG L LG Y+G GV ++ K
Sbjct: 450 NPVGQSGLGIMYLHGKGVRKDTGKALKYFAKAADQGWVDGQLQLGNMYYSGIGVQRDFKL 509
Query: 116 AVKTFEKACRLG 127
A+K F A + G
Sbjct: 510 AIKYFSLASQSG 521
Score = 48.9 bits (115), Expect = 9e-06
Identities = 32/93 (34%), Positives = 44/93 (46%), Gaps = 1/93 (1%)
Query: 39 INKQKLFQYLSKACELNSGNGCRFLGDFY-ENGKYVKKDLRKAAQYYSKACGLNDQDGCL 97
++ Q+ QY S+A + FLG Y E +K D A +Y+ KA L + G
Sbjct: 396 LDHQRALQYFSQAANAGNAVAMAFLGKIYLEGSDNIKADNETAFKYFKKAADLGNPVGQS 455
Query: 98 ILGYKQYAGKGVVKNEKQAVKTFEKACRLGSED 130
LG GKGV K+ +A+K F KA G D
Sbjct: 456 GLGIMYLHGKGVRKDTGKALKYFAKAADQGWVD 488
>ref|NP_207422.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64598 hypothetical protein HP0628 - Helicobacter pylori (strain 26695)
gb|AAD07699.1| (AE000577) H. pylori predicted coding region HP0628 [Helicobacter
pylori 26695]
Length = 225
Score = 63.5 bits (153), Expect = 4e-10
Identities = 51/146 (34%), Positives = 66/146 (44%), Gaps = 13/146 (8%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQ----INKQKLFQ----YLSKACE 53
G V KD KAI YY +CE GC L L+SN I+K +L Q YL AC
Sbjct: 58 GSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACN 115
Query: 54 LNSGNGCRFLGDFYENGKY-VKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKN 112
GC LG Y NG + AA+Y+ AC C LG G GV ++
Sbjct: 116 AGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQD 175
Query: 113 EKQAVKTFEKACRLGSEDACGILNNY 138
+++A+ F AC G E +C N+
Sbjct: 176 DQRALDLFSYACDNGFESSCRNYGNF 201
Score = 43.1 bits (100), Expect = 5e-04
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 40 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
+K+ Q + AC+ C LG + NG V KD KA YY +C + GC L
Sbjct: 28 DKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNL 87
Query: 100 GYKQYAGK--GVVKNEKQAVKTFEKACRLGSEDACGIL 135
G G+ K + V AC G C L
Sbjct: 88 GLMSNVNNIYGIDKAQLSQVDLNYLACNAGDMMGCANL 125
>ref|NP_223289.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71914 hypothetical protein jhp0571 - Helicobacter pylori (strain J99)
gb|AAD06154.1| (AE001490) putative [Helicobacter pylori J99]
Length = 352
Score = 62.4 bits (150), Expect = 8e-10
Identities = 50/146 (34%), Positives = 66/146 (44%), Gaps = 13/146 (8%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQ----INKQKLFQ----YLSKACE 53
G V KD KA+ YY +CE GC L L+SN I+K +L Q YL AC
Sbjct: 185 GSGVPKDYYKAMSYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQLSQVDLNYL--ACN 242
Query: 54 LNSGNGCRFLGDFYENGKY-VKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKN 112
GC LG Y NG + AA+Y+ AC C LG G GV ++
Sbjct: 243 AGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQD 302
Query: 113 EKQAVKTFEKACRLGSEDACGILNNY 138
+++A+ F AC G E +C N+
Sbjct: 303 DQRALDLFSYACDNGFESSCRNYGNF 328
Score = 50.4 bits (119), Expect = 3e-06
Identities = 39/141 (27%), Positives = 54/141 (37%), Gaps = 9/141 (6%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQIN-KQKLFQYLSKACELNS 56
G ++ + KA +YY C + C +L N+ N K+ Q + AC+
Sbjct: 112 GVGIQTNRLKAARYYEMGCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGD 171
Query: 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGK--GVVKNEK 114
C LG + NG V KD KA YY +C + GC LG G+ K +
Sbjct: 172 MLACNNLGWMFANGSGVPKDYYKAMSYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAQL 231
Query: 115 QAVKTFEKACRLGSEDACGIL 135
V AC G C L
Sbjct: 232 SQVDLNYLACNAGDMMGCANL 252
Score = 50.4 bits (119), Expect = 3e-06
Identities = 29/95 (30%), Positives = 45/95 (46%), Gaps = 1/95 (1%)
Query: 42 QKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGY 101
Q F+ S++C+ + GC +G Y NG ++ + KAA+YY C D C L
Sbjct: 84 QGAFKLFSQSCDNGNAAGCFAVGAMYANGVGIQTNRLKAARYYEMGCSGGDATACANLAQ 143
Query: 102 KQYAGKGVVKNEKQ-AVKTFEKACRLGSEDACGIL 135
K N+K+ A++ + AC+ G AC L
Sbjct: 144 MYENKKNADSNDKENALQLYAVACQGGDMLACNNL 178
>ref|NP_651179.1| (NM_142922) BcDNA:LD23587 gene product [Drosophila melanogaster]
gb|AAD55437.1|AF181652_1 (AF181652) BcDNA.LD23587 [Drosophila melanogaster]
gb|AAF56178.1| (AE003744) BcDNA:LD23587 gene product [Drosophila melanogaster]
Length = 819
Score = 60.1 bits (144), Expect = 4e-09
Identities = 48/146 (32%), Positives = 66/146 (44%), Gaps = 10/146 (6%)
Query: 3 GGGTVKKDLKKAIQYYVKACELNEMFGC-----LSLVSNSQI--NKQKLFQYLSKACELN 55
GG ++D +KA++Y+ A + G L L + QI + F Y SKA E+
Sbjct: 346 GGKVTEQDHQKALEYFKMAADAGSAVGIAFLGKLYLEGSDQIRADNDAAFGYFSKAAEMG 405
Query: 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ 115
G LG Y G V KD KA Y+++A DG L LG + G GV + K
Sbjct: 406 DPVGQSGLGLMYLKGLGVPKDSIKALSYFTQAADQGWVDGQLQLGNMYFTGNGVKTDYKL 465
Query: 116 AVKTFEKACRLGSEDA---CGILNNY 138
A K F A + G A G++N Y
Sbjct: 466 AFKYFNLATQSGHVLAYYNLGVMNAY 491
>gb|AAF45339.1| (AE003066) CG13865 gene product [Drosophila melanogaster]
gb|AAM52744.1| (AY122232) RE58665p [Drosophila melanogaster]
Length = 266
Score = 59.3 bits (142), Expect = 7e-09
Identities = 45/157 (28%), Positives = 64/157 (40%), Gaps = 41/157 (26%)
Query: 14 AIQYYVKACELNEMFGCLS----LVSNSQI-----NKQKLFQYLSKACELNSGNGCRFLG 64
A +YY K C LN+ CL LVS S N K ++L+K+C+LN+ C +L
Sbjct: 92 AYEYYEKGCNLNDSDACLHSGLLLVSKSMPREIDWNVPKGLEFLTKSCDLNNATACFYLS 151
Query: 65 DFYENGKYVK--------------------------------KDLRKAAQYYSKACGLND 92
+ +G K KD++KA Q+ KAC L +
Sbjct: 152 GMHISGVQKKADQSAVTASSGSGTSSPPAGQPPLKDSDYIVLKDMKKAFQFAHKACELRN 211
Query: 93 QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129
C L G G+ KNEK+A K + A + E
Sbjct: 212 MYACANLSQMYARGDGIEKNEKEAEKYKKLALEMQDE 248
Score = 39.3 bits (90), Expect = 0.007
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 21/148 (14%)
Query: 10 DLKKA--IQYYVKACELNEMFGCLS--------LVSNSQINKQKLFQ-----YLSKACEL 54
DLKK ++ YV+ + FGC S L+ + +K F+ Y S +
Sbjct: 4 DLKKESDVKEYVEKLGVEYRFGCYSEKKPEACHLLGDYLEGIKKDFEKASKVYKSTCDDY 63
Query: 55 NSGNGCRFLGDFYENGKYV---KKDLRKAAQYYSKACGLNDQDGCL---ILGYKQYAGKG 108
C G++ GK K + + A +YY K C LND D CL +L + +
Sbjct: 64 GYAKSCYKYGNYSFLGKGKSGSKGNPQVAYEYYEKGCNLNDSDACLHSGLLLVSKSMPRE 123
Query: 109 VVKNEKQAVKTFEKACRLGSEDACGILN 136
+ N + ++ K+C L + AC L+
Sbjct: 124 IDWNVPKGLEFLTKSCDLNNATACFYLS 151
>emb|CAB65792.2| (AL109657) dJ842G6.2 (novel protein imilar to SEL1L (sel-1
(suppressor of lin-12, C.elegans)-like)) [Homo sapiens]
Length = 505
Score = 56.6 bits (135), Expect = 5e-08
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACELNE-----MFGCLSLVSNSQI--NKQKLFQYLSKACE 53
++G + +D KA+ Y++KA + G + L N+ + N F+Y S A
Sbjct: 125 LIGRKGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAAS 184
Query: 54 LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNE 113
+ G LG Y +GK V + +A +Y+ KA D LG+ Y+G G+ K+
Sbjct: 185 KGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDY 244
Query: 114 KQAVKTFEKACRLG 127
K A K F A + G
Sbjct: 245 KLAFKYFYLASQSG 258
Score = 50.1 bits (118), Expect = 4e-06
Identities = 38/124 (30%), Positives = 55/124 (43%), Gaps = 8/124 (6%)
Query: 16 QYYVKACELNEM-----FGCLSLVSNSQINKQ--KLFQYLSKACELNSGNGCRFLGDFY- 67
QYY E ++ G L L+ +++ K Y KA + S N F+G Y
Sbjct: 103 QYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYL 162
Query: 68 ENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127
E V ++ A +Y+S A + G LG + GKGV N +A+K F+KA G
Sbjct: 163 EGNAAVPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKG 222
Query: 128 SEDA 131
DA
Sbjct: 223 WPDA 226
>ref|XP_046437.2| (XM_046437) similar to dJ842G6.2 (novel protein imilar to SEL1L
(sel-1 (suppressor of lin-12, C.elegans)-like)) [Homo
sapiens]
Length = 387
Score = 56.6 bits (135), Expect = 5e-08
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACELNE-----MFGCLSLVSNSQI--NKQKLFQYLSKACE 53
++G + +D KA+ Y++KA + G + L N+ + N F+Y S A
Sbjct: 196 LIGRKGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYLEGNAAVPQNNATAFKYFSMAAS 255
Query: 54 LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNE 113
+ G LG Y +GK V + +A +Y+ KA D LG+ Y+G G+ K+
Sbjct: 256 KGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKGWPDAQFQLGFMYYSGSGIWKDY 315
Query: 114 KQAVKTFEKACRLG 127
K A K F A + G
Sbjct: 316 KLAFKYFYLASQSG 329
Score = 50.1 bits (118), Expect = 4e-06
Identities = 38/124 (30%), Positives = 55/124 (43%), Gaps = 8/124 (6%)
Query: 16 QYYVKACELNEM-----FGCLSLVSNSQINKQ--KLFQYLSKACELNSGNGCRFLGDFY- 67
QYY E ++ G L L+ +++ K Y KA + S N F+G Y
Sbjct: 174 QYYKFLAERGDVQIQVSLGQLHLIGRKGLDQDYYKALHYFLKAAKAGSANAMAFIGKMYL 233
Query: 68 ENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127
E V ++ A +Y+S A + G LG + GKGV N +A+K F+KA G
Sbjct: 234 EGNAAVPQNNATAFKYFSMAASKGNAIGLHGLGLLYFHGKGVPLNYAEALKYFQKAAEKG 293
Query: 128 SEDA 131
DA
Sbjct: 294 WPDA 297
>ref|NP_455035.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD08897.1| (AL627266) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 384
Score = 55.8 bits (133), Expect = 8e-08
Identities = 37/116 (31%), Positives = 58/116 (49%), Gaps = 3/116 (2%)
Query: 23 ELNEMFGCLSLVSNSQINKQKL--FQYLSKACELNSGNGCRFLGDFYENGKY-VKKDLRK 79
ELN + G L +++ ++ Q+ KA EL + LG FY NGK +K+DL+K
Sbjct: 93 ELNFIVGSLYDSGFVEVDDKEARSLQWFRKAAELGQADAQNILGYFYLNGKRGIKRDLQK 152
Query: 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGIL 135
Q+Y A + D + LG Y+G V + +A + FE+A ++G A L
Sbjct: 153 GGQWYELAAAQGNVDALINLGEIYYSGTRVPLDYARAFEFFERAAKMGKSRALNYL 208
Score = 39.7 bits (91), Expect = 0.006
Identities = 20/86 (23%), Positives = 43/86 (49%), Gaps = 6/86 (6%)
Query: 7 VKKDLKKAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSGNGC 60
+K+DL+K Q+Y A + ++L + ++ + F++ +A ++
Sbjct: 146 IKRDLQKGGQWYELAAAQGNVDALINLGEIYYSGTRVPLDYARAFEFFERAAKMGKSRAL 205
Query: 61 RFLGDFYENGKYVKKDLRKAAQYYSK 86
+L Y NG++V D RKAA+ +++
Sbjct: 206 NYLAWMYTNGQFVDTDCRKAAELFAQ 231
>ref|NP_207316.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
pir||G64584 conserved hypothetical protein HP0519 - Helicobacter pylori
(strain 26695)
gb|AAD07587.1| (AE000566) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 276
Score = 53.5 bits (127), Expect = 4e-07
Identities = 37/101 (36%), Positives = 51/101 (49%), Gaps = 5/101 (4%)
Query: 42 QKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYS----KACGLNDQDGCL 97
Q+ F+ A E + G G +L Y GK VK D +KA Q+Y+ K G G L
Sbjct: 66 QQAFKDFRLAQEYSIGLGSVYLAKMYLEGKGVKVDYKKA-QFYAENAIKGYGSGLLGGAL 124
Query: 98 ILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNNY 138
ILG Q G G+ K+ KQA+KT+ R+ S + NN+
Sbjct: 125 ILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSTNFANNF 165
>gb|AAB47276.1| (U86608) 29 kDa protein [Helicobacter pylori]
Length = 256
Score = 52.0 bits (123), Expect = 1e-06
Identities = 30/69 (43%), Positives = 40/69 (57%)
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LG YENG+ V KD +KAA+Y+ KA + G LG G+GV K+EK+AV+ F
Sbjct: 68 LGIMYENGRGVPKDYKKAAEYFQKAVDNDIPRGYNNLGVMYKEGRGVPKDEKKAVEYFRI 127
Query: 123 ACRLGSEDA 131
A G +A
Sbjct: 128 ATEKGYANA 136
Score = 47.8 bits (112), Expect = 2e-05
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 42 QKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGY 101
+K +Y KA + + G LG Y+ G+ V KD +KA +Y+ A + + LG
Sbjct: 83 KKAAEYFQKAVDNDIPRGYNNLGVMYKEGRGVPKDEKKAVEYFRIATEKGYANAYINLGI 142
Query: 102 KQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137
G+GV N +A + F KA G+ +A +L +
Sbjct: 143 MYMEGRGVPSNYVKATECFRKAMHKGNVEAYILLGD 178
Score = 40.8 bits (94), Expect = 0.003
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 15/141 (10%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSL---------VSNSQINKQKLFQYLSKACEL 54
G V KD KKA++Y+ A E ++L V ++ + + F+ KA
Sbjct: 111 GRGVPKDEKKAVEYFRIATEKGYANAYINLGIMYMEGRGVPSNYVKATECFR---KAMHK 167
Query: 55 NSGNGCRFLGDFYENGKY---VKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVK 111
+ LGD Y +G ++ D KA YY A ++ L G GV K
Sbjct: 168 GNVEAYILLGDIYYSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLAESYRYGLGVEK 227
Query: 112 NEKQAVKTFEKACRLGSEDAC 132
++K+A + +KAC + C
Sbjct: 228 DKKKAEEYMQKACDFDIDKNC 248
>ref|NP_223762.1| (NC_000921) putative [Helicobacter pylori J99]
pir||G71856 hypothetical protein jhp1045 - Helicobacter pylori (strain J99)
gb|AAD06623.1| (AE001532) putative [Helicobacter pylori J99]
Length = 256
Score = 51.6 bits (122), Expect = 1e-06
Identities = 30/69 (43%), Positives = 39/69 (56%)
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LG YENG+ V KD +KA +Y+ KA + G LG GKGV K+EK+AV+ F
Sbjct: 68 LGIMYENGRGVPKDYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGKGVPKDEKKAVEYFRI 127
Query: 123 ACRLGSEDA 131
A G +A
Sbjct: 128 ATEKGYTNA 136
Score = 50.4 bits (119), Expect = 3e-06
Identities = 36/135 (26%), Positives = 61/135 (44%), Gaps = 6/135 (4%)
Query: 9 KDLKKAIQYYVKACELNEMFGCLSLVSNSQINK------QKLFQYLSKACELNSGNGCRF 62
K+ ++A +Y A + E + L + + +K +Y KA + + G
Sbjct: 44 KEYERAASFYKSAIKNGESLAYILLGIMYENGRGVPKDYKKAVEYFQKAVDNDIPRGYNN 103
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LG Y+ GK V KD +KA +Y+ A + + LG G+GV N +A + F K
Sbjct: 104 LGVMYKEGKGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECFRK 163
Query: 123 ACRLGSEDACGILNN 137
A G+ +A +L +
Sbjct: 164 AMHKGNVEAYILLGD 178
Score = 40.8 bits (94), Expect = 0.003
Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 9/138 (6%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSG 57
G V KD KKA++Y+ A E ++L N K + KA +
Sbjct: 111 GKGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECFRKAMHKGNV 170
Query: 58 NGCRFLGDFYENGKY---VKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEK 114
LGD Y +G ++ D KA YY A ++ L G GV K++K
Sbjct: 171 EAYILLGDIYYSGNDQLGIEPDKDKAVVYYKMAADVSSSRAYEGLSESYRYGLGVEKDKK 230
Query: 115 QAVKTFEKACRLGSEDAC 132
+A + +KAC + C
Sbjct: 231 KAEEYMQKACDFDIDKNC 248
>ref|NP_207908.1| (NC_000915) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
pir||E64659 conserved hypothetical secreted protein HP1117 - Helicobacter
pylori (strain 26695)
gb|AAD08161.1| (AE000618) conserved hypothetical secreted protein [Helicobacter
pylori 26695]
Length = 256
Score = 51.2 bits (121), Expect = 2e-06
Identities = 30/69 (43%), Positives = 40/69 (57%)
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LG YENG+ V KD +KAA+Y+ KA + G LG G+GV K+EK+AV+ F
Sbjct: 68 LGIMYENGRGVPKDEKKAAEYFQKAVDNDIPRGYNNLGVMYKEGRGVPKDEKKAVEYFRI 127
Query: 123 ACRLGSEDA 131
A G +A
Sbjct: 128 ATEKGYTNA 136
Score = 48.5 bits (114), Expect = 1e-05
Identities = 29/98 (29%), Positives = 49/98 (49%)
Query: 40 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
+++K +Y KA + + G LG Y+ G+ V KD +KA +Y+ A + + L
Sbjct: 81 DEKKAAEYFQKAVDNDIPRGYNNLGVMYKEGRGVPKDEKKAVEYFRIATEKGYTNAYINL 140
Query: 100 GYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137
G G+GV N +A + F KA G+ +A +L +
Sbjct: 141 GIMYMEGRGVPSNYVKATECFRKAMHKGNVEAYILLGD 178
Score = 41.2 bits (95), Expect = 0.002
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 15/141 (10%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSL---------VSNSQINKQKLFQYLSKACEL 54
G V KD KKA++Y+ A E ++L V ++ + + F+ KA
Sbjct: 111 GRGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYVKATECFR---KAMHK 167
Query: 55 NSGNGCRFLGDFYENGKY---VKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVK 111
+ LGD Y +G ++ D KA YY A ++ L G GV K
Sbjct: 168 GNVEAYILLGDIYYSGNDQLGIEPDKDKAIVYYKMAADMSSSRAYEGLAESYQYGLGVEK 227
Query: 112 NEKQAVKTFEKACRLGSEDAC 132
++K+A + +KAC + C
Sbjct: 228 DKKKAEEYMQKACDFDIDKNC 248
>gb|AAL83953.1|AF354056_1 (AF354056) temperature-induced protein [Helicobacter pylori]
Length = 112
Score = 51.2 bits (121), Expect = 2e-06
Identities = 29/71 (40%), Positives = 42/71 (58%), Gaps = 9/71 (12%)
Query: 72 YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVK-NEKQAV-KTFE-----KAC 124
Y KD +A +Y+ KAC LND DGC IL ++ K +++ N ++++ K E KAC
Sbjct: 40 YTDKDFTRAKEYFEKACRLNDADGCTIL--REIYSKAIMRENARESIEKALEHTATAKAC 97
Query: 125 RLGSEDACGIL 135
L +ACGIL
Sbjct: 98 ELELREACGIL 108
>ref|NP_506144.1| (NM_073743) Yeast hypothetical gene L8167.5 like [Caenorhabditis
elegans]
pir||S68303 sel-1 protein - Caenorhabditis elegans
pir||T22223 sel-1 protein - Caenorhabditis elegans
gb|AAC47113.1| (U50829) SEL-1 [Caenorhabditis elegans]
emb|CAB01505.1| (Z78063) predicted using Genefinder~Similarity to Yeast predicted
gene L8167.5 (TR:G544502)~cDNA EST yk53e10.3 comes from
this gene~cDNA EST yk53e10.5 comes from this gene~cDNA
EST yk318c4.5 comes from this gene~cDNA EST yk342b8.3
comes from this gene~>
Length = 685
Score = 50.1 bits (118), Expect = 4e-06
Identities = 39/140 (27%), Positives = 68/140 (47%), Gaps = 15/140 (10%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACE---------LNEMFGCLSLVSNSQINKQKLFQYLSKA 51
+ GG + ++ + A +Y + A E L +M+ L + + QK F+YL K+
Sbjct: 300 LAGGRGLNQNFELAFRYLLAAAESGSADALTYLGKMY--LDGTPFTPKDYQKSFEYLMKS 357
Query: 52 CELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAG----K 107
+ +S + LG Y GK VKK+ KA + + + + DG + L Y G K
Sbjct: 358 ADKSSPSAQAVLGAMYMKGKGVKKNYEKALKLLTLSADKKNADGQMYLAELHYKGVPTNK 417
Query: 108 GVVKNEKQAVKTFEKACRLG 127
GV ++ K++VK ++ A + G
Sbjct: 418 GVHRDFKKSVKLYQLASQNG 437
>gb|AAC47112.1| (U50828) sel-1 gene product [Caenorhabditis elegans]
Length = 685
Score = 50.1 bits (118), Expect = 4e-06
Identities = 39/140 (27%), Positives = 68/140 (47%), Gaps = 15/140 (10%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACE---------LNEMFGCLSLVSNSQINKQKLFQYLSKA 51
+ GG + ++ + A +Y + A E L +M+ L + + QK F+YL K+
Sbjct: 300 LAGGRGLNQNFELAFRYLLAAAESGSADALTYLGKMY--LDGTPFTPKDYQKSFEYLMKS 357
Query: 52 CELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAG----K 107
+ +S + LG Y GK VKK+ KA + + + + DG + L Y G K
Sbjct: 358 ADKSSPSAQAVLGAMYMKGKGVKKNYEKALKLLTLSADKKNADGQMYLAELHYKGVPTNK 417
Query: 108 GVVKNEKQAVKTFEKACRLG 127
GV ++ K++VK ++ A + G
Sbjct: 418 GVHRDFKKSVKLYQLASQNG 437
>ref|NP_223186.1| (NC_000921) putative [Helicobacter pylori J99]
pir||A71927 hypothetical protein jhp0468 - Helicobacter pylori (strain J99)
gb|AAD06051.1| (AE001481) putative [Helicobacter pylori J99]
Length = 283
Score = 49.7 bits (117), Expect = 6e-06
Identities = 35/101 (34%), Positives = 50/101 (48%), Gaps = 5/101 (4%)
Query: 42 QKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYS----KACGLNDQDGCL 97
++ F+ A E + G G +L Y GK VK D +KA Q+Y+ K G G L
Sbjct: 74 KQAFKDFKLAQEYSIGLGNVYLAKMYLEGKGVKVDYKKA-QFYAQNAIKGYGSGLLGGAL 132
Query: 98 ILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGILNNY 138
ILG Q G G+ K+ KQA+KT+ R+ S + N +
Sbjct: 133 ILGRMQAEGLGMKKDLKQALKTYRHVVRMFSNKSANFANKF 173
>gb|AAD05210.1| (AF063095) SELlL [Mus musculus]
gb|AAH26816.1| (BC026816) Sel1 (suppressor of lin-12) 1 homolog (C. elegans) [Mus
musculus]
Length = 740
Score = 48.1 bits (113), Expect = 2e-05
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 2 VGGGTVKKDLKKAIQYYVKACELNEM-----FGCLSLVSNSQI--NKQKLFQYLSKACEL 54
+ G +++DL IQYY E ++ G L L + N Q+ F Y + A
Sbjct: 297 MNSGMLEEDL---IQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANA 353
Query: 55 NSGNGCRFLGDFYENGK-YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNE 113
+ + FLG Y G V + A Y+ KA + + G LG G+GV N
Sbjct: 354 GNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNY 413
Query: 114 KQAVKTFEKACRLGSED 130
A+K F+KA G D
Sbjct: 414 DLALKYFQKAAEQGWVD 430
Score = 44.3 bits (103), Expect = 2e-04
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 3 GGGTVKKDLKKAIQYYVKACELNEMFGCLSL----VSNSQI---NKQKLFQYLSKACELN 55
GG V+++ ++A Y+ A L S I + + Y KA ++
Sbjct: 332 GGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMG 391
Query: 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ 115
+ G LG Y G+ V+ + A +Y+ KA DG L LG Y G GV ++ KQ
Sbjct: 392 NPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQ 451
Query: 116 AVKTFEKACRLG 127
A+K F A + G
Sbjct: 452 ALKYFNLASQGG 463
>ref|XP_127076.1| (XM_127076) similar to Sel-1 homolog precursor (Suppressor of
lin-12-like protein) (Sel-1L) [Mus musculus]
sp|Q9Z2G6|SE1L_MOUSE Sel-1 homolog precursor (Suppressor of lin-12-like protein)
(Sel-1L)
dbj|BAB23750.1| (AK005023) Sel1 (suppressor of lin-12) 1 homolog (C. elegans)~data
source:MGD, source key:MGI:1329016,
evidence:ISS~putative [Mus musculus]
Length = 790
Score = 48.1 bits (113), Expect = 2e-05
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 2 VGGGTVKKDLKKAIQYYVKACELNEM-----FGCLSLVSNSQI--NKQKLFQYLSKACEL 54
+ G +++DL IQYY E ++ G L L + N Q+ F Y + A
Sbjct: 347 MNSGMLEEDL---IQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANA 403
Query: 55 NSGNGCRFLGDFYENGK-YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNE 113
+ + FLG Y G V + A Y+ KA + + G LG G+GV N
Sbjct: 404 GNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNY 463
Query: 114 KQAVKTFEKACRLGSED 130
A+K F+KA G D
Sbjct: 464 DLALKYFQKAAEQGWVD 480
Score = 44.3 bits (103), Expect = 2e-04
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 3 GGGTVKKDLKKAIQYYVKACELNEMFGCLSL----VSNSQI---NKQKLFQYLSKACELN 55
GG V+++ ++A Y+ A L S I + + Y KA ++
Sbjct: 382 GGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMG 441
Query: 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ 115
+ G LG Y G+ V+ + A +Y+ KA DG L LG Y G GV ++ KQ
Sbjct: 442 NPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQ 501
Query: 116 AVKTFEKACRLG 127
A+K F A + G
Sbjct: 502 ALKYFNLASQGG 513
>ref|NP_005056.3| (NM_005065) sel-1 suppressor of lin-12-like (C. elegans);
Suppressor of lin 12 (sel-1), C. elegans, homolog of;
sel-1 (suppressor of lin-12, C.elegans)-like [Homo
sapiens]
ref|XP_007325.4| (XM_007325) sel-1 suppressor of lin-12-like (C. elegans) [Homo
sapiens]
sp|Q9UBV2|SE1L_HUMAN Sel-1 homolog precursor (Suppressor of lin-12-like protein)
(Sel-1L)
dbj|BAA87904.1| (AB020335) Pancreas-specific gene [Homo sapiens]
dbj|BAA89204.1| (AB024763) TSA305 [Homo sapiens]
Length = 794
Score = 48.1 bits (113), Expect = 2e-05
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 2 VGGGTVKKDLKKAIQYYVKACELNEM-----FGCLSLVSNSQI--NKQKLFQYLSKACEL 54
+ G +++DL IQYY E ++ G L L + N Q+ F Y + A
Sbjct: 351 MNSGMLEEDL---IQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANA 407
Query: 55 NSGNGCRFLGDFYENGK-YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNE 113
+ + FLG Y G V + A Y+ KA + + G LG G+GV N
Sbjct: 408 GNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNY 467
Query: 114 KQAVKTFEKACRLGSED 130
A+K F+KA G D
Sbjct: 468 DLALKYFQKAAEQGWVD 484
Score = 44.3 bits (103), Expect = 2e-04
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 3 GGGTVKKDLKKAIQYYVKACELNEMFGCLSL----VSNSQI---NKQKLFQYLSKACELN 55
GG V+++ ++A Y+ A L S I + + Y KA ++
Sbjct: 386 GGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMG 445
Query: 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ 115
+ G LG Y G+ V+ + A +Y+ KA DG L LG Y G GV ++ KQ
Sbjct: 446 NPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQ 505
Query: 116 AVKTFEKACRLG 127
A+K F A + G
Sbjct: 506 ALKYFNLASQGG 517
Score = 39.3 bits (90), Expect = 0.007
Identities = 33/124 (26%), Positives = 54/124 (42%), Gaps = 8/124 (6%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQI-------NKQKLFQYLSKACE 53
++ G K ++A +Y KA +N L VS + + N Q + K E
Sbjct: 193 ILNGSNKKSQKREAYRYLQKAASMNHT-KALERVSYALLFGDYLPQNIQAAREMFEKLTE 251
Query: 54 LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNE 113
S G LG Y +G V KA YY+ + ++LGY+ +AG GV+++
Sbjct: 252 EGSPKGQTALGFLYASGLGVNSSQAKALVYYTFGALGGNLIAHMVLGYRYWAGIGVLQSC 311
Query: 114 KQAV 117
+ A+
Sbjct: 312 ESAL 315
>ref|NP_460954.1| (NC_003197) putative TPR repeat protein [Salmonella typhimurium
LT2]
gb|AAL20913.1| (AE008788) putative TPR repeat protein [Salmonella typhimurium LT2]
Length = 564
Score = 48.1 bits (113), Expect = 2e-05
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 40 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
N ++L+++ E N FL Y +G V +D +K Y KA L + D L +
Sbjct: 425 NYDAAMKWLTQSAEQNHPGALLFLAYAYNDGDGVAQDSKKYLSYLFKAAELGESDAQLEV 484
Query: 100 GYKQYAGKGVVKNEKQAVKTFEKACRLGSEDA 131
GY G+G+ KN +A K +K+ G+ A
Sbjct: 485 GYLNLIGEGMPKNLPEAYKWIKKSADQGNAQA 516
Score = 40.8 bits (94), Expect = 0.003
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEM-----FGCLSLVSNSQI-NKQKLFQYLSKACELNSG 57
G V +D KK + Y KA EL E G L+L+ N + ++++ K+ + +
Sbjct: 455 GDGVAQDSKKYLSYLFKAAELGESDAQLEVGYLNLIGEGMPKNLPEAYKWIKKSADQGNA 514
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKA 87
LG Y NG V+KDL KA + + A
Sbjct: 515 QAHYNLGLMYRNGDGVEKDLNKAKLHLTAA 544
>gb|AAF29413.1|AF052059_1 (AF052059) SEL1L [Homo sapiens]
gb|AAL40905.1| (AF198647) sel-1 [Homo sapiens]
Length = 794
Score = 48.1 bits (113), Expect = 2e-05
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 2 VGGGTVKKDLKKAIQYYVKACELNEM-----FGCLSLVSNSQI--NKQKLFQYLSKACEL 54
+ G +++DL IQYY E ++ G L L + N Q+ F Y + A
Sbjct: 351 MNSGMLEEDL---IQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANA 407
Query: 55 NSGNGCRFLGDFYENGK-YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNE 113
+ + FLG Y G V + A Y+ KA + + G LG G+GV N
Sbjct: 408 GNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNY 467
Query: 114 KQAVKTFEKACRLGSED 130
A+K F+KA G D
Sbjct: 468 DLALKYFQKAAEQGWVD 484
Score = 44.3 bits (103), Expect = 2e-04
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 3 GGGTVKKDLKKAIQYYVKACELNEMFGCLSL----VSNSQI---NKQKLFQYLSKACELN 55
GG V+++ ++A Y+ A L S I + + Y KA ++
Sbjct: 386 GGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMG 445
Query: 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ 115
+ G LG Y G+ V+ + A +Y+ KA DG L LG Y G GV ++ KQ
Sbjct: 446 NPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQ 505
Query: 116 AVKTFEKACRLG 127
A+K F A + G
Sbjct: 506 ALKYFNLASQGG 517
Score = 39.3 bits (90), Expect = 0.007
Identities = 33/124 (26%), Positives = 54/124 (42%), Gaps = 8/124 (6%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQI-------NKQKLFQYLSKACE 53
++ G K ++A +Y KA +N L VS + + N Q + K E
Sbjct: 193 ILNGSNKKSQKREAYRYLQKAASMNHT-KALERVSYALLFGDYLPQNIQAAREMFEKLTE 251
Query: 54 LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNE 113
S G LG Y +G V KA YY+ + ++LGY+ +AG GV+++
Sbjct: 252 EGSPKGQTALGFLYASGLGVNSSQAKALVYYTFGALGGNLIAHMVLGYRYWAGIGVLQSC 311
Query: 114 KQAV 117
+ A+
Sbjct: 312 ESAL 315
>dbj|BAB12403.1| (AB048195) SEL1L [Mesocricetus auratus]
Length = 794
Score = 47.8 bits (112), Expect = 2e-05
Identities = 39/137 (28%), Positives = 58/137 (41%), Gaps = 11/137 (8%)
Query: 2 VGGGTVKKDLKKAIQYYVKACELNEM-----FGCLSLVSNSQI--NKQKLFQYLSKACEL 54
+ G +++DL IQYY E ++ G L L + N Q+ F Y + A
Sbjct: 351 MNSGMLEEDL---IQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQNHQRAFDYFNLAANA 407
Query: 55 NSGNGCRFLGDFYENGK-YVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNE 113
+ + FLG Y G V + A Y+ KA + + G LG G+G+ N
Sbjct: 408 GNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGIQVNY 467
Query: 114 KQAVKTFEKACRLGSED 130
A+K F+KA G D
Sbjct: 468 DLALKYFQKAAEQGWVD 484
Score = 43.9 bits (102), Expect = 3e-04
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 3 GGGTVKKDLKKAIQYYVKACELNEMFGCLSL----VSNSQI---NKQKLFQYLSKACELN 55
GG V+++ ++A Y+ A L S I + + Y KA ++
Sbjct: 386 GGRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMG 445
Query: 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ 115
+ G LG Y G+ ++ + A +Y+ KA DG L LG Y G GV ++ KQ
Sbjct: 446 NPVGQSGLGMAYLYGRGIQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQ 505
Query: 116 AVKTFEKACRLG 127
A+K F A + G
Sbjct: 506 ALKYFNLASQGG 517
>gb|EAA00460.1| (AAAB01008986) agCP9334 [Anopheles gambiae str. PEST]
Length = 228
Score = 47.0 bits (110), Expect = 4e-05
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 21/148 (14%)
Query: 10 DLKKA--IQYYVKACELNEMFGCLS--------LVSNSQINKQKLFQ-----YLSKACEL 54
DLK ++ Y+ + FGC S L+ + +K F+ Y S +
Sbjct: 25 DLKNETEVKEYIDKLGVEYRFGCYSEKKPEVCHLLGDYLEGIRKDFEKAAKVYRSNCDDY 84
Query: 55 NSGNGCRFLGDFYENGK---YVKKDLRKAAQYYSKACGLNDQDGCL---ILGYKQYAGKG 108
N G C G++ GK K D KA YY K C LND D CL +L + K
Sbjct: 85 NYGKSCLKYGNYTFLGKGRTSEKGDPAKAYAYYEKGCALNDPDACLHSGLLLVSKLMPKE 144
Query: 109 VVKNEKQAVKTFEKACRLGSEDACGILN 136
+ ++ + + +K+C + + AC L+
Sbjct: 145 ITRDVPKGFELLKKSCEMNNAGACFYLS 172
Score = 45.8 bits (107), Expect = 8e-05
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 20/111 (18%)
Query: 3 GGGTVKKDLKKAIQYYVKACELNEMFGCLS----LVSN---SQINKQ--KLFQYLSKACE 53
G + K D KA YY K C LN+ CL LVS +I + K F+ L K+CE
Sbjct: 102 GRTSEKGDPAKAYAYYEKGCALNDPDACLHSGLLLVSKLMPKEITRDVPKGFELLKKSCE 161
Query: 54 LNSGNGCRFLGDFY------ENGKYVK-----KDLRKAAQYYSKACGLNDQ 93
+N+ C +L Y E+ Y K +D +KA +Y A + D+
Sbjct: 162 MNNAGACFYLSGMYISGVLKEDQMYAKGDGTARDEKKAEKYKKLALEMQDE 212
>gb|AAD41587.1|AF057704_3 (AF057704) enhanced entry protein EnhC [Legionella pneumophila]
Length = 1201
Score = 47.0 bits (110), Expect = 4e-05
Identities = 33/125 (26%), Positives = 54/125 (42%), Gaps = 6/125 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACE------LNEMFGCLSLVSNSQINKQKLFQYLSKACELNSG 57
G V + KA+ + +A E ++++ G N+Q+ + KA L +G
Sbjct: 945 GKGVPVNYSKALSLFKEASEKGAPEAMSQLAGMYFYGLGQPRNEQQALVWYKKAASLGNG 1004
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
N LG E G VK D A +YY A ++ L L + G GV K+ K++
Sbjct: 1005 NALYALGLLSETGVGVKLDFPDALRYYQDASDKGNEKAMLALARMYHYGLGVEKDHKRSA 1064
Query: 118 KTFEK 122
++K
Sbjct: 1065 SIYQK 1069
>ref|NP_459646.1| (NC_003197) putative TPR repeat protein [Salmonella typhimurium
LT2]
gb|AAL19605.1| (AE008726) putative TPR repeat protein [Salmonella typhimurium LT2]
Length = 331
Score = 47.0 bits (110), Expect = 4e-05
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 10 DLKKAIQYYVKACELNEMFGCLSL-------VSNSQINKQKLFQYLSKACELNSGNGCRF 62
D +A+ +Y K E + +L Q + Q L+ + A + + + R
Sbjct: 119 DYAQAVAWYRKGAEQSHNLAQYNLGRMYHSGTGVEQNDTQALYWFKQAALQGHCASQER- 177
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
L Y NGK +K+L AA +Y K+ +GY Y GKG+ ++ +QA+ F K
Sbjct: 178 LAYMYGNGKGCRKNLSLAALWYKKSALQESSYSQYQMGYCYYIGKGIKQDYQQAIYWFRK 237
Query: 123 ACRLGSEDA 131
A G +DA
Sbjct: 238 AADQGDDDA 246
>ref|NP_246550.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03695.1| (AE006198) unknown [Pasteurella multocida]
Length = 172
Score = 46.2 bits (108), Expect = 6e-05
Identities = 24/93 (25%), Positives = 47/93 (49%)
Query: 40 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
+KQ+ ++ K+ E N + LG Y G + +D ++A ++YS++ D L
Sbjct: 77 DKQQALKWYQKSAEQNHPDAQYHLGLMYSEGDGIAQDFKQAYKWYSQSAVQGDARALYNL 136
Query: 100 GYKQYAGKGVVKNEKQAVKTFEKACRLGSEDAC 132
G G+G+ ++ +A F++AC+ G + C
Sbjct: 137 GTLYANGEGIERDWDRAKMYFKQACKAGLPEGC 169
>ref|NP_586349.1| (NC_003237) similarity to SKT5 PROTEIN [Encephalitozoon cuniculi]
emb|CAD25953.1| (AL590450) similarity to SKT5 PROTEIN [Encephalitozoon cuniculi]
Length = 590
Score = 46.2 bits (108), Expect = 6e-05
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 4 GGTVKKDLKKAIQYYVKACE--LNEMFGCLSLVSNS----QINKQKLFQYLSKACELNSG 57
G V KD + A++Y+ + +E L+L S +I+ +K F + +A E+N+
Sbjct: 362 GYGVPKDERLAVRYFSEGVRAGFDEAIISLALCYRSGIGVRISPEKSFALMKRAAEMNNS 421
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
+ LG +YE G K+LRKA ++Y + N+ L G V +++ +
Sbjct: 422 SAQNTLGYYYEEGYGTPKNLRKAVKWYETSAKRNNSWALFNLSTLYLNGNHVPADKELGI 481
Query: 118 KTFEKACRLGSEDACGIL 135
+ ++ LG+ A L
Sbjct: 482 RLLIRSRDLGNPRAMNTL 499
Score = 38.9 bits (89), Expect = 0.010
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 40 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
N K F+ + ++ + LG+ YE GK V +DL+KA + Y K+ G L
Sbjct: 224 NLIKAFEMYRLSAKMENSYAQNALGNCYEEGKGVDRDLQKAFELYKKSALQGYPSGQCNL 283
Query: 100 GYKQYAGKGVVKNEKQAVKTFEKACRLG 127
+ G G +N ++A + +++A G
Sbjct: 284 AFCYQKGIGTERNLEKAFEWYKRAAIQG 311
>ref|NP_496487.1| (NM_064086) ZK20.4.p [Caenorhabditis elegans]
pir||T27773 hypothetical protein ZK20.4 - Caenorhabditis elegans
emb|CAA93779.1| (Z69904) cDNA EST yk428d5.3 comes from this gene~cDNA EST yk428d5.5
comes from this gene~cDNA EST yk537a3.3 comes from this
gene~cDNA EST yk621h11.3 comes from this gene~cDNA EST
yk537a3.5 comes from this gene~cDNA EST yk621h11.5 comes
from this gene [>
Length = 249
Score = 45.4 bits (106), Expect = 1e-04
Identities = 37/140 (26%), Positives = 59/140 (41%), Gaps = 27/140 (19%)
Query: 11 LKKAIQYYVKACELNEMFGC--LSLV-----SNSQINKQKLFQYLSKACELNSGNGCRFL 63
L K I+ AC+ N GC LSLV + + + +K +Y+ +ACEL G C L
Sbjct: 92 LSKMIRPMKIACDANIPQGCRYLSLVHWNGEKDRKADSEKAERYMRRACELEDGEACWLL 151
Query: 64 GDFYENGKY--------------------VKKDLRKAAQYYSKACGLNDQDGCLILGYKQ 103
+Y K + +D+ K+ Q+ +AC ++ C +
Sbjct: 152 STWYMGNKEKFKTNAAGEAKELDRAELGSLSRDMDKSLQFAIRACEMDIPQSCANVSRMF 211
Query: 104 YAGKGVVKNEKQAVKTFEKA 123
G GV K+ QA K ++A
Sbjct: 212 KLGDGVPKDLDQAKKYADRA 231
Score = 44.3 bits (103), Expect = 2e-04
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Query: 7 VKKDLKKAIQYYVKACELNEM------FGCLSLVSN--SQINKQKLFQYLSKACELNSGN 58
++++ + A+ + K C+ N +G L + K+ + + AC+ N
Sbjct: 50 LQQNFQAAVAIFKKNCDENSYPKSCFKYGMYMLAGKVGDDASLSKMIRPMKIACDANIPQ 109
Query: 59 GCRFLGDFYENG-KYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVK-NEKQA 116
GCR+L + NG K K D KA +Y +AC L D + C +L K K N
Sbjct: 110 GCRYLSLVHWNGEKDRKADSEKAERYMRRACELEDGEACWLLSTWYMGNKEKFKTNAAGE 169
Query: 117 VKTFEKACRLGS 128
K ++A LGS
Sbjct: 170 AKELDRA-ELGS 180
>ref|NP_662672.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum
TLS]
gb|AAM73014.1| (AE012932) conserved hypothetical protein [Chlorobium tepidum
TLS]
Length = 92
Score = 43.5 bits (101), Expect = 4e-04
Identities = 25/62 (40%), Positives = 30/62 (48%)
Query: 35 SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQD 94
S Q QK F L KA E LG YE G V++D R A ++Y KAC +Q
Sbjct: 20 SYCQPPSQKEFSELKKAAEQGDAQAQCMLGLMYELGLGVRQDKRTAKEWYGKACDNGNQK 79
Query: 95 GC 96
GC
Sbjct: 80 GC 81
>gb|AAC37164.1| (L05770) putative regulatory protein PobS [Acinetobacter sp. ADP1]
Length = 392
Score = 43.5 bits (101), Expect = 4e-04
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 2 VGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVS------NSQINKQKLFQYLSKACELN 55
+ G V +++ A+ +Y K N+ G L+L + N + ++ K+ + N
Sbjct: 244 LNGLDVTQNMSLALFWYEKTASQNDPEGELNLGKLYLNGLGIEKNYELGLTWIKKSVKQN 303
Query: 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ 115
+ L + YE G V+KD+++A +Y KA L LG G+GV + K
Sbjct: 304 YPDAYFTLAELYEKGHIVQKDIQQALIFYKKAANLRHATSAYRLGQIFELGQGVTLDLKL 363
Query: 116 AVKTFEKACRLGSEDA 131
A + + +A S +A
Sbjct: 364 AKRFYHQAASNFSSEA 379
>gb|AAH15313.1|AAH15313 (BC015313) hypothetical protein FLJ12439 [Homo sapiens]
Length = 231
Score = 42.7 bits (99), Expect = 7e-04
Identities = 39/147 (26%), Positives = 62/147 (41%), Gaps = 13/147 (8%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACEL---NEMFGCLS---LVSNSQINKQ------KLFQYL 48
+ G G + +DLK A + ++ ACE + C + L + Q+N+ K Y
Sbjct: 79 VTGKGGLTQDLKAAARCFLMACEKPGKKSIAACHNVGLLAHDGQVNEDGQPDLGKARDYY 138
Query: 49 SKACELNSGNGCRFLGD-FYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGK 107
++AC+ + C L F + KD+ A +Y KAC L C G
Sbjct: 139 TRACDGGYTSSCFNLSAMFLQGAPGFPKDMDLACKYSMKACDLGHIWACANASRMYKLGD 198
Query: 108 GVVKNEKQAVKTFEKACRLGSEDACGI 134
GV K+E +A +A +L E G+
Sbjct: 199 GVDKDEAKAEVLKNRAQQLHREQQKGV 225
>ref|NP_075565.1| (NM_023077) hypothetical protein FLJ12439 [Homo sapiens]
dbj|BAB14063.1| (AK022501) unnamed protein product [Homo sapiens]
Length = 231
Score = 42.7 bits (99), Expect = 7e-04
Identities = 39/147 (26%), Positives = 62/147 (41%), Gaps = 13/147 (8%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACEL---NEMFGCLS---LVSNSQINKQ------KLFQYL 48
+ G G + +DLK A + ++ ACE + C + L + Q+N+ K Y
Sbjct: 79 VTGKGGLTQDLKAAARCFLMACEKPGKKSIAACHNVGLLAHDGQVNEDGQPDLGKARDYY 138
Query: 49 SKACELNSGNGCRFLGD-FYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGK 107
++AC+ + C L F + KD+ A +Y KAC L C G
Sbjct: 139 TRACDGGYTSSCFNLSAMFLQGAPGFPKDMDLACKYSMKACDLGHIWACANASRMYKLGD 198
Query: 108 GVVKNEKQAVKTFEKACRLGSEDACGI 134
GV K+E +A +A +L E G+
Sbjct: 199 GVDKDEAKAEVLKNRAQQLHREQQKGV 225
>ref|NP_455743.1| (NC_003198) putative secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD08375.1| (AL627269) putative secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 509
Score = 42.4 bits (98), Expect = 9e-04
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 59 GCRF-LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
G +F LG +Y G+YVK D + A ++ KA ILGY G+ + ++A+
Sbjct: 52 GAQFSLGSWYAEGRYVKPDYKLAIKWLEKAGKQGSDFSYFILGYHYNYGENFPLSRQKAL 111
Query: 118 KTFEKACRLGSEDACGILNN 137
+ + KA LG IL +
Sbjct: 112 EWYRKAAELGDSSTQEILGD 131
Score = 40.0 bits (92), Expect = 0.004
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 17/137 (12%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSG 57
G VK D K AI++ KA + F L N +++QK ++ KA EL
Sbjct: 64 GRYVKPDYKLAIKWLEKAGKQGSDFSYFILGYHYNYGENFPLSRQKALEWYRKAAELGDS 123
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCL-----------ILGYKQYAG 106
+ LGD Y G ++ + A ++Y KA + G + LG G
Sbjct: 124 STQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDAGVVRGQGSASSAQFKLGVMYAHG 183
Query: 107 KGVVKNEKQAVKTFEKA 123
+GV ++ +Q KA
Sbjct: 184 QGVPQDYQQTAILMRKA 200
>ref|NP_460716.1| (NC_003197) putative TPR repeat protein [Salmonella typhimurium
LT2]
gb|AAL20675.1| (AE008778) putative TPR repeat protein [Salmonella typhimurium LT2]
Length = 509
Score = 42.4 bits (98), Expect = 9e-04
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 46 QYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYA 105
Q L + E + LG +Y G+YVK D + A ++ KA ILGY
Sbjct: 40 QELEQKAEQGDESAQFSLGSWYAEGRYVKPDYKLAIKWLEKAGKQGSDFSYFILGYHYNY 99
Query: 106 GKGVVKNEKQAVKTFEKACRLGSEDACGILNN 137
G+ + ++A++ + KA LG IL +
Sbjct: 100 GENFPLSRQKALEWYRKAAELGDSSTQEILGD 131
Score = 40.0 bits (92), Expect = 0.004
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 17/137 (12%)
Query: 4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLV------SNSQINKQKLFQYLSKACELNSG 57
G VK D K AI++ KA + F L N +++QK ++ KA EL
Sbjct: 64 GRYVKPDYKLAIKWLEKAGKQGSDFSYFILGYHYNYGENFPLSRQKALEWYRKAAELGDS 123
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCL-----------ILGYKQYAG 106
+ LGD Y G ++ + A ++Y KA + G + LG G
Sbjct: 124 STQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDAGVVRGQGSASSAQFKLGVMYAHG 183
Query: 107 KGVVKNEKQAVKTFEKA 123
+GV ++ +Q KA
Sbjct: 184 QGVPQDYQQTAILMRKA 200
>ref|NP_564049.1| (NM_101684) expressed protein [Arabidopsis thaliana]
gb|AAF78381.1|AC069551_14 (AC069551) T10O22.22 [Arabidopsis thaliana]
Length = 678
Score = 42.0 bits (97), Expect = 0.001
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 7 VKKDLKKAIQYYVKACELNE------MFGCLSLVSNSQINKQKLFQYLSKACELNSGNGC 60
+++D KA+ +++KA + E + + + + N K ++L+ A + +
Sbjct: 259 LRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTLAAKEGLYSAF 318
Query: 61 RFLGDFYENGKYV-KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKT 119
+G Y G V KK+ KA +Y+ KA D G LG G GV ++ +QA K
Sbjct: 319 NGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDVRQATKY 378
Query: 120 FEKACRLGSEDA 131
F A G A
Sbjct: 379 FFVAANAGQPKA 390
>gb|AAK64159.1| (AY039982) unknown protein [Arabidopsis thaliana]
Length = 678
Score = 42.0 bits (97), Expect = 0.001
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 7 VKKDLKKAIQYYVKACELNE------MFGCLSLVSNSQINKQKLFQYLSKACELNSGNGC 60
+++D KA+ +++KA + E + + + + N K ++L+ A + +
Sbjct: 259 LRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTKALEWLTLAAKEGLYSAF 318
Query: 61 RFLGDFYENGKYV-KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKT 119
+G Y G V KK+ KA +Y+ KA D G LG G GV ++ +QA K
Sbjct: 319 NGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIGVNRDVRQATKY 378
Query: 120 FEKACRLGSEDA 131
F A G A
Sbjct: 379 FFVAANAGQPKA 390
>ref|NP_459433.1| (NC_003197) putative periplasmic protein [Salmonella typhimurium
LT2]
gb|AAL19392.1| (AE008715) putative periplasmic protein [Salmonella typhimurium
LT2]
Length = 503
Score = 41.6 bits (96), Expect = 0.002
Identities = 23/60 (38%), Positives = 30/60 (49%)
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LG +E G V + +A QYY +AC L GC + Y G GV K+ QA K +K
Sbjct: 56 LGFIHEYGLSVPMNRERALQYYKQACELGGNYGCYNVKYAYQYGDGVAKDSAQANKYAKK 115
>ref|NP_455031.1| (NC_003198) probable secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD08893.1| (AL627266) probable secreted protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 223
Score = 41.2 bits (95), Expect = 0.002
Identities = 23/60 (38%), Positives = 30/60 (49%)
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LG +E G V + +A QYY +AC L GC + Y G GV K+ QA K +K
Sbjct: 56 LGFIHEYGLNVPMNREQALQYYKQACELGGNYGCYNVKYAYQHGDGVAKDSAQANKYAKK 115
>ref|XP_131544.1| (XM_131544) RIKEN cDNA 2010305A19 [Mus musculus]
gb|AAH12391.1|AAH12391 (BC012391) Similar to hypothetical protein FLJ12439 [Mus musculus]
Length = 231
Score = 41.2 bits (95), Expect = 0.002
Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 13/142 (9%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACEL---NEMFGCLS---LVSNSQINKQ------KLFQYL 48
+ G G + +DLK A ++ ACE + C + L + Q+N+ K Y
Sbjct: 79 VTGKGGLTQDLKAASSCFLMACEKPGKKSVESCHNVGLLAHDGQVNEDGQPDLGKARDYY 138
Query: 49 SKACELNSGNGCRFLGD-FYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGK 107
S+AC+ C L F + KD+ A +Y KAC L C G
Sbjct: 139 SRACDGGYAASCFNLSAMFLQGAPGFPKDMGLACKYSMKACDLGHVWACANASRMYKLGD 198
Query: 108 GVVKNEKQAVKTFEKACRLGSE 129
GV K+E +A +A +L E
Sbjct: 199 GVDKDEAKAEVLKNRARQLHKE 220
>ref|NP_245305.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK02452.1| (AE006073) unknown [Pasteurella multocida]
Length = 242
Score = 41.2 bits (95), Expect = 0.002
Identities = 28/94 (29%), Positives = 42/94 (43%), Gaps = 11/94 (11%)
Query: 42 QKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGY 101
+K + + S+A E S L FY G VK+D+R + + K D L+LG
Sbjct: 109 EKAYWWFSEAAEKGSIKAINNLAVFYLQGHGVKQDIRHSITLFEKTANSGSLDAMLVLGQ 168
Query: 102 KQYAGKGVVKNE----KQAVKTFEKACRLGSEDA 131
+ +NE QA K ++KA G+ DA
Sbjct: 169 -------IYENELNQMTQAFKWYKKAAEAGNHDA 195
>ref|NP_103302.1| (NC_002678) unknown protein [Mesorhizobium loti]
dbj|BAB49088.1| (AP002998) unknown protein [Mesorhizobium loti]
Length = 716
Score = 41.2 bits (95), Expect = 0.002
Identities = 25/74 (33%), Positives = 36/74 (47%)
Query: 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAV 117
N LGD Y G VK+D +AA YS A D LG AG+GV K+ + +
Sbjct: 536 NAITALGDAYRLGTGVKQDYVQAASLYSAAADTGQIDAMANLGQAYLAGEGVKKDVPRGL 595
Query: 118 KTFEKACRLGSEDA 131
+ ++A +G+ A
Sbjct: 596 ELLQRANDMGNRYA 609
>dbj|BAB25716.1| (AK008518) data source:SPTR, source key:Q9H9Z9,
evidence:ISS~homolog to CDNA FLJ12439 FIS, CLONE
NT2RM1000127~putative [Mus musculus]
Length = 204
Score = 41.2 bits (95), Expect = 0.002
Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 13/142 (9%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACEL---NEMFGCLS---LVSNSQINKQ------KLFQYL 48
+ G G + +DLK A ++ ACE + C + L + Q+N+ K Y
Sbjct: 52 VTGKGGLTQDLKAASSCFLMACEKPGKKSVESCHNVGLLAHDGQVNEDGQPDLGKARDYY 111
Query: 49 SKACELNSGNGCRFLGD-FYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGK 107
S+AC+ C L F + KD+ A +Y KAC L C G
Sbjct: 112 SRACDGGYAASCFNLSAMFLQGAPGFPKDMGLACKYSMKACDLGHVWACANASRMYKLGD 171
Query: 108 GVVKNEKQAVKTFEKACRLGSE 129
GV K+E +A +A +L E
Sbjct: 172 GVDKDEAKAEVLKNRARQLHKE 193
>ref|NP_415177.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
pir||B64799 hypothetical protein b0644 - Escherichia coli
gb|AAB40845.1| (U82598) hypothetical protein [Escherichia coli]
gb|AAC73745.1| (AE000169) orf, hypothetical protein [Escherichia coli K12]
dbj|BAA35291.1| (D90704) Sel-1 protein [Escherichia coli]
Length = 327
Score = 40.8 bits (94), Expect = 0.003
Identities = 25/90 (27%), Positives = 46/90 (50%), Gaps = 1/90 (1%)
Query: 41 KQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILG 100
KQ ++ YL A + + G +G Y++G+ V+KD + A ++++KA ND L
Sbjct: 227 KQAMYWYLKAAAQGSVGAYVN-IGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYNLA 285
Query: 101 YKQYAGKGVVKNEKQAVKTFEKACRLGSED 130
+ G+G + +QA+ + K G+ D
Sbjct: 286 IMYHYGEGRPVDLRQALDLYRKVQSSGTRD 315
>ref|NP_286370.1| (NC_002655) ybeQ gene product [Escherichia coli O157:H7 EDL933]
ref|NP_308709.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
gb|AAG54978.1|AE005243_7 (AE005243) ybeQ gene product [Escherichia coli O157:H7 EDL933]
dbj|BAB34105.1| (AP002552) hypothetical protein [Escherichia coli O157:H7]
Length = 195
Score = 40.8 bits (94), Expect = 0.003
Identities = 25/90 (27%), Positives = 46/90 (50%), Gaps = 1/90 (1%)
Query: 41 KQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILG 100
KQ ++ YL A + + G +G Y++G+ V+KD + A ++++KA ND L
Sbjct: 95 KQAMYWYLKAAAQGSVGAYVN-IGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYNLA 153
Query: 101 YKQYAGKGVVKNEKQAVKTFEKACRLGSED 130
+ G+G + +QA+ + K G+ D
Sbjct: 154 IMYHYGEGRPVDLRQALDLYRKVQSSGTRD 183
>sp|P77234|YBEQ_ECOLI Hypothetical protein ybeQ
Length = 325
Score = 40.8 bits (94), Expect = 0.003
Identities = 25/90 (27%), Positives = 46/90 (50%), Gaps = 1/90 (1%)
Query: 41 KQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILG 100
KQ ++ YL A + + G +G Y++G+ V+KD + A ++++KA ND L
Sbjct: 225 KQAMYWYLKAAAQGSVGAYVN-IGYMYKHGQGVEKDYQAAFEWFTKAAECNDATAWYNLA 283
Query: 101 YKQYAGKGVVKNEKQAVKTFEKACRLGSED 130
+ G+G + +QA+ + K G+ D
Sbjct: 284 IMYHYGEGRPVDLRQALDLYRKVQSSGTRD 313
>ref|NP_405544.1| (NC_003143) putative exported protein [Yersinia pestis]
emb|CAC90802.1| (AJ414150) putative exported protein [Yersinia pestis]
Length = 720
Score = 40.0 bits (92), Expect = 0.004
Identities = 26/86 (30%), Positives = 38/86 (43%)
Query: 46 QYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYA 105
++L K+ + + L Y G VK+D K Y KA L D + +GY
Sbjct: 588 KWLEKSADHKNIKALFLLAQMYNEGDGVKEDQTKYFSYLLKAAQLGLSDAQVEIGYLYLV 647
Query: 106 GKGVVKNEKQAVKTFEKACRLGSEDA 131
G+GV KN +A + KA G+ A
Sbjct: 648 GEGVEKNLPEAYQWHIKAAEQGNVHA 673
Score = 39.7 bits (91), Expect = 0.006
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 40 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
++ K F YL KA +L + +G Y G+ V+K+L +A Q++ KA + L
Sbjct: 618 DQTKYFSYLLKAAQLGLSDAQVEIGYLYLVGEGVEKNLPEAYQWHIKAAEQGNVHAHYNL 677
Query: 100 GYKQYAGKGVVKNEKQAVKTFEKACRLGSEDA 131
G+ G G KN +A F A + G +A
Sbjct: 678 GWIYQNGDGTEKNLDKAKFHFTVAAKSGMREA 709
>ref|NP_439767.1| (NC_000907) H. influenzae predicted coding region HI1625
[Haemophilus influenzae Rd]
sp|P44277|YG25_HAEIN Hypothetical protein HI1625
pir||H64038 hypothetical protein HI1625 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC23273.1| (U32835) H. influenzae predicted coding region HI1625 [Haemophilus
influenzae Rd]
Length = 165
Score = 40.0 bits (92), Expect = 0.004
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LG Y G+ +D KA ++S+A G LG G V +N +QA+K FE+
Sbjct: 72 LGMLYNLGRGTVRDYEKAYWWFSEAAEKGSVKGLNNLGVMYLRGDYVKQNTEQAIKLFER 131
Query: 123 ACRLGSEDACGILNN 137
+ DA +L+N
Sbjct: 132 TAQAKDTDAMMMLSN 146
>gb|AAK54860.1| (AF304855) SEL1L [Rattus norvegicus]
Length = 151
Score = 39.7 bits (91), Expect = 0.006
Identities = 34/124 (27%), Positives = 55/124 (43%), Gaps = 8/124 (6%)
Query: 1 MVGGGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQI-------NKQKLFQYLSKACE 53
++ G T K ++A +Y KA +N L VS + + N Q + K E
Sbjct: 22 ILNGSTRKNQKREAYRYLQKAAGMNHT-KALERVSYALLFGDYLTQNIQAAKEMFEKLTE 80
Query: 54 LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNE 113
S G LG Y +G V KA YY+ + ++LGY+ +AG GV+++
Sbjct: 81 EGSPKGQTGLGFLYASGLGVNSSQAKALVYYTFGALGGNLIAHMVLGYRYWAGIGVLQSC 140
Query: 114 KQAV 117
+ A+
Sbjct: 141 ESAL 144
>ref|NP_197519.1| (NM_122026) putative protein [Arabidopsis thaliana]
Length = 290
Score = 38.9 bits (89), Expect = 0.010
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 50 KACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGV 109
K E N GNG FL ++ + K V+KD KA +Y +A ++ DG ++ Y + K +
Sbjct: 162 KMIEANPGNGI-FLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELVWK-I 219
Query: 110 VKNEKQAVKTFEKACRLGSEDACGILNNY 138
K+ +A F +A ED C + +Y
Sbjct: 220 HKDSSRAENYFNQAVAAAPED-CYVQASY 247
>ref|NP_252667.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||S57899 hypothetical protein 1 - Pseudomonas aeruginosa
pir||D83147 hypothetical protein PA3978 [imported] - Pseudomonas aeruginosa
(strain PAO1)
emb|CAA57576.1| (X82072) orf1 [Pseudomonas aeruginosa]
gb|AAG07365.1|AE004816_1 (AE004816) hypothetical protein [Pseudomonas aeruginosa]
Length = 182
Score = 38.9 bits (89), Expect = 0.010
Identities = 22/69 (31%), Positives = 35/69 (49%)
Query: 63 LGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122
LG+F+ +G+ + +DL+ A ++ KA LG + G+GV N QA +
Sbjct: 67 LGEFFYDGERIPRDLQAALNWFEKASLQGHAQAQYHLGTMFFRGEGVPANNVQAYIVLKM 126
Query: 123 ACRLGSEDA 131
A G+EDA
Sbjct: 127 AAVNGAEDA 135
>ref|NP_473246.1| (NC_000521) predicted using hexExon; MAL3P4.5 (PFC0550w),
Hypothetical protein, len: 808 aa [Plasmodium
falciparum]
pir||T18454 hypothetical protein C0550w - malaria parasite (Plasmodium
falciparum)
emb|CAA15596.1| (AL008970) hypothetical protein, PFC0550w [Plasmodium falciparum
3D7]
Length = 807
Score = 38.9 bits (89), Expect = 0.010
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 40 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLIL 99
N ++ F+Y+++A + N+ + LG Y G V+KD+ K+ + +SKA D + L
Sbjct: 466 NFKQAFKYINEASKKNNLLALKELGIIYLYGYGVQKDINKSIENFSKAAEAGDVESKCYL 525
Query: 100 GYKQY 104
GY Y
Sbjct: 526 GYIYY 530
>pir||T46587 hypothetical protein [imported] - Vogesella indigofera
gb|AAD54009.1|AF088857_1 (AF088857) hypothetical protein [Vogesella indigofera]
Length = 268
Score = 38.9 bits (89), Expect = 0.010
Identities = 28/83 (33%), Positives = 40/83 (47%), Gaps = 4/83 (4%)
Query: 51 ACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC--GLNDQDGCLILGYKQYAGKG 108
A E N LG YE G V +D KAA +Y +A G+ + L + Y G+G
Sbjct: 39 AAEQGDANAQFRLGVRYEKGSGVPQDFAKAATWYRQAATQGMPEAQNNLAVLYLN--GQG 96
Query: 109 VVKNEKQAVKTFEKACRLGSEDA 131
V +N+ +A+ F KA G +A
Sbjct: 97 VNQNDAEALAWFRKAATQGQAEA 119
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.318 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,491,902
Number of Sequences: 1026957
Number of extensions: 3458520
Number of successful extensions: 8230
Number of sequences better than 1.0e-02: 77
Number of HSP's better than 0.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 7611
Number of HSP's gapped (non-prelim): 321
length of query: 138
length of database: 324,149,939
effective HSP length: 114
effective length of query: 24
effective length of database: 207,076,841
effective search space: 4969844184
effective search space used: 4969844184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 89 (38.9 bits)