BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644965|ref|NP_207135.1| hypothetical protein
[Helicobacter pylori 26695]
         (101 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207135.1|  (NC_000915) hypothetical protein [Helicoba...   202  8e-52
ref|NP_223038.1|  (NC_000921) putative [Helicobacter pylori ...   169  4e-42

>ref|NP_207135.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||A64562 hypothetical protein HP0337 - Helicobacter pylori (strain 26695)
 gb|AAD07409.1| (AE000551) H. pylori predicted coding region HP0337 [Helicobacter
           pylori 26695]
          Length = 101

 Score =  202 bits (513), Expect = 8e-52
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MKIMHQVRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKL 60
           MKIMHQVRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKL
Sbjct: 1   MKIMHQVRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKL 60

Query: 61  SDFNEEELKIMFEAEEKRLLEQIQTKHFKEVWEKGDNEQGK 101
           SDFNEEELKIMFEAEEKRLLEQIQTKHFKEVWEKGDNEQGK
Sbjct: 61  SDFNEEELKIMFEAEEKRLLEQIQTKHFKEVWEKGDNEQGK 101



>ref|NP_223038.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||G71945 hypothetical protein jhp0319 - Helicobacter pylori (strain J99)
 gb|AAD05909.1| (AE001468) putative [Helicobacter pylori J99]
          Length = 112

 Score =  169 bits (429), Expect = 4e-42
 Identities = 89/112 (79%), Positives = 93/112 (82%), Gaps = 11/112 (9%)

Query: 1   MKIMHQVRDFLDSCKQTIQKNSSEVFQKTKRAFFKEESQKIREQAVKIVEKRLKKEGMKL 60
           MKIMHQV+DFLD CKQTI KNS+E FQKTKRA FKE+SQKIREQAVKIVEKRL KE M+L
Sbjct: 1   MKIMHQVKDFLDFCKQTIHKNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLIKENMQL 60

Query: 61  SDFNEEELKIMFEAEEKRLLEQIQ-----------TKHFKEVWEKGDNEQGK 101
           SDFNEEELKIMFEAEEKRLLEQI            TKHFKEVWEKGDNEQ K
Sbjct: 61  SDFNEEELKIMFEAEEKRLLEQIHAKELKEKQEKTTKHFKEVWEKGDNEQEK 112



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.314    0.129    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,216,570
Number of Sequences: 1026957
Number of extensions: 1918817
Number of successful extensions: 12819
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12816
Number of HSP's gapped (non-prelim): 2
length of query: 101
length of database: 324,149,939
effective HSP length: 77
effective length of query: 24
effective length of database: 245,074,250
effective search space: 5881782000
effective search space used: 5881782000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 90 (39.3 bits)