BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644966|ref|NP_207136.1| hypothetical protein
[Helicobacter pylori 26695]
         (188 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207136.1|  (NC_000915) hypothetical protein [Helicoba...   373  e-103
ref|NP_223039.1|  (NC_000921) putative [Helicobacter pylori ...   287  5e-77
gb|AAC69258.1|  (AF025970) hypothetical protein [Helicobacte...   126  1e-28

>ref|NP_207136.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64562 hypothetical protein HP0338 - Helicobacter pylori (strain 26695)
 gb|AAD07410.1| (AE000551) H. pylori predicted coding region HP0338 [Helicobacter
           pylori 26695]
          Length = 188

 Score =  373 bits (957), Expect = e-103
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MSKENSVISGLMNFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVIWVDIW 60
           MSKENSVISGLMNFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVIWVDIW
Sbjct: 1   MSKENSVISGLMNFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVIWVDIW 60

Query: 61  VYSDVRQFLLDTSSSFVWLLSALLIKWGVIVFSARKCYKFSQKMFALIQKKRQIRENLKN 120
           VYSDVRQFLLDTSSSFVWLLSALLIKWGVIVFSARKCYKFSQKMFALIQKKRQIRENLKN
Sbjct: 61  VYSDVRQFLLDTSSSFVWLLSALLIKWGVIVFSARKCYKFSQKMFALIQKKRQIRENLKN 120

Query: 121 RPNPLDTKNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEEL 180
           RPNPLDTKNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEEL
Sbjct: 121 RPNPLDTKNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEEL 180

Query: 181 KAKNNKGN 188
           KAKNNKGN
Sbjct: 181 KAKNNKGN 188



>ref|NP_223039.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||H71945 hypothetical protein jhp0320 - Helicobacter pylori (strain J99)
 gb|AAD05910.1| (AE001468) putative [Helicobacter pylori J99]
          Length = 186

 Score =  287 bits (734), Expect = 5e-77
 Identities = 147/188 (78%), Positives = 165/188 (87%), Gaps = 2/188 (1%)

Query: 1   MSKENSVISGLMNFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVIWVDIW 60
           M+K+NSVISGLMNFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVI VDIW
Sbjct: 1   MNKKNSVISGLMNFFSEKNERWLLAHRHTRGFVIVAWLFRFKSIAFSILITLLVILVDIW 60

Query: 61  VYSDVRQFLLDTSSSFVWLLSALLIKWGVIVFSARKCYKFSQKMFALIQKKRQIRENLKN 120
           VYSDVRQFLLDTSSSF+WLL ALLIKWGVIV SARKCY+FSQKMFALIQ+KRQIRENLKN
Sbjct: 61  VYSDVRQFLLDTSSSFIWLLIALLIKWGVIVISARKCYQFSQKMFALIQRKRQIRENLKN 120

Query: 121 RPNPLDTKNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGERLSSVTEEIISKKLEEL 180
           R N  D KN   E+LS++ EEIISKKQEE   KE    ++  ++LS++TEE+I KK EEL
Sbjct: 121 RSNRKDAKNF--EKLSNIAEEIISKKQEESHHKEDSNDENHKDKLSNITEEMILKKQEEL 178

Query: 181 KAKNNKGN 188
           KA+ +KG+
Sbjct: 179 KARKDKGD 186



>gb|AAC69258.1| (AF025970) hypothetical protein [Helicobacter pylori]
          Length = 83

 Score =  126 bits (317), Expect = 1e-28
 Identities = 67/85 (78%), Positives = 73/85 (85%), Gaps = 2/85 (2%)

Query: 104 MFALIQKKRQIRENLKNRPNPLDTKNSPKERLSSVTEEIISKKQEELQSKETPEGKHDGE 163
           MFALIQ+KRQIRENLKNR    D KN   E+LS+  EEIISKKQEELQSKETPEGKHDGE
Sbjct: 1   MFALIQRKRQIRENLKNRSTRKDAKNF--EKLSNTAEEIISKKQEELQSKETPEGKHDGE 58

Query: 164 RLSSVTEEIISKKLEELKAKNNKGN 188
           RLSSVTEEIISKKLEELK + +KG+
Sbjct: 59  RLSSVTEEIISKKLEELKTRKDKGD 83



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,165,465
Number of Sequences: 1026957
Number of extensions: 4497406
Number of successful extensions: 22677
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22666
Number of HSP's gapped (non-prelim): 3
length of query: 188
length of database: 324,149,939
effective HSP length: 114
effective length of query: 74
effective length of database: 207,076,841
effective search space: 15323686234
effective search space used: 15323686234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 94 (40.8 bits)