BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644967|ref|NP_207137.1| hypothetical protein
[Helicobacter pylori 26695]
(116 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207137.1| (NC_000915) hypothetical protein [Helicoba... 240 2e-63
gb|AAL05265.1| (AY054410) lysozyme [Helicobacter pylori] >g... 229 6e-60
gb|AAL99312.1| (AC116548) hypothetical protein [Dictyosteli... 50 5e-06
gb|AAL99313.1| (AC116548) hypothetical protein [Dictyosteli... 44 3e-04
pdb|1L72| Lysozyme (E.C.3.2.1.17) (Mutant With Asp 127 Re... 43 6e-04
pdb|1L28| Lysozyme (E.C.3.2.1.17) (Mutant With Pro 86 Rep... 43 6e-04
pdb|192L| Mol_id: 1; Molecule: Lysozyme; Chain: Null; Ec:... 43 6e-04
pdb|201L|B Chain B, Lysozyme (E.C.3.2.1.17) Insertion Mutan... 43 6e-04
pdb|1TLA| Lysozyme (E.C.3.2.1.17) (Mutant With Cys 54 Rep... 43 6e-04
pdb|1L73| Lysozyme (E.C.3.2.1.17) (Mutant With Asp 127 Re... 43 6e-04
pdb|1DYG| Sgamma97-Beta-Mercaptoethanol Lysozyme (E.C.3.2... 43 7e-04
pdb|1L59| Lysozyme (E.C.3.2.1.17) (Mutant With Cys 54 Rep... 42 0.001
pdb|1L10| Lysozyme (E.C.3.2.1.17) (Mutant With Thr 157 Re... 42 0.001
pdb|1G0P|A Chain A, Crystal Structure Of T4 Lysozyme Mutant... 42 0.001
pdb|1L01| Lysozyme (E.C.3.2.1.17) (Double Mutant With Thr... 42 0.001
pdb|1LLH|A Chain A, Are Carboxy Terminii Of Helices Coded B... 42 0.001
pdb|160L| Lysozyme (E.C.3.2.1.17) Mutant With Cys 54 Repl... 42 0.001
pdb|1L51| Lysozyme (E.C.3.2.1.17) (Mutant With Ala 98 Rep... 42 0.001
pdb|127L| Lysozyme (E.C.3.2.1.17) Mutant With Cys 54 Repl... 42 0.001
pdb|1L15| Lysozyme (E.C.3.2.1.17) (Mutant With Thr 157 Re... 42 0.002
pdb|1L49| Lysozyme (E.C.3.2.1.17) (Mutant With Ala 98 Rep... 42 0.002
pdb|1QUG|A Chain A, E108v Mutant Of T4 Lysozyme 42 0.002
pdb|1L48| Lysozyme (E.C.3.2.1.17) (Mutant With Ala 98 Rep... 42 0.002
pdb|1DYA| Sgamma97-Beta-Mercaptoethanol Lysozyme (E.C.3.2... 42 0.002
pdb|1L50| Lysozyme (E.C.3.2.1.17) (Mutant With Ala 98 Rep... 42 0.002
pdb|1QS9|A Chain A, The Introduction Of Strain And Its Effe... 42 0.002
pdb|1L71| Lysozyme (E.C.3.2.1.17) (Mutant With Glu 128 Re... 41 0.002
pdb|247L| The Response Of T4 Lysozyme To Large-To-Small S... 41 0.002
pdb|1L75| Lysozyme (E.C.3.2.1.17) (Mutant With Asp 127 Re... 41 0.002
pdb|238L| The Response Of T4 Lysozyme To Large-To-Small S... 41 0.002
pdb|1L11| Sgamma97-Beta-Mercaptoethanol-Lysozyme (E.C.3.2... 41 0.002
pdb|1L25| Lysozyme (E.C.3.2.1.17) (Mutant With Pro 86 Rep... 41 0.003
pdb|1L38| Lysozyme (E.C.3.2.1.17) (Mutant With Gln 123 Re... 41 0.003
pdb|191L| Mol_id: 1; Molecule: Lysozyme; Chain: Null; Ec:... 41 0.003
pdb|1DYE| Lysozyme (E.C.3.2.1.17) Mutant With Val 131 Rep... 41 0.003
pdb|1L77| Lysozyme (E.C.3.2.1.17) (Mutant With Cys 54 Rep... 41 0.003
pdb|1L32| Lysozyme (E.C.3.2.1.17) (Mutant With Pro 86 Rep... 41 0.003
pdb|1L37| Lysozyme (E.C.3.2.1.17) (Mutant With Thr 115 Re... 41 0.003
pdb|1L36| Lysozyme (E.C.3.2.1.17) Mutant With Glu 128 Rep... 41 0.003
pdb|177L| Lysozyme (E.C.3.2.1.17) Mutant With Cys 54 Repl... 41 0.003
pdb|1L92| Lysozyme (E.C.3.2.1.17) Mutant With Cys 54 Repl... 41 0.003
pdb|234L| T4 Lysozyme Mutant M106l 41 0.003
pdb|1CU3|A Chain A, T4 Lysozyme Mutant V87m 41 0.003
pdb|1QTB|A Chain A, The Introduction Of Strain And Its Effe... 40 0.004
>ref|NP_207137.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||C64562 hypothetical protein HP0339 - Helicobacter pylori (strain 26695)
gb|AAD07411.1| (AE000551) H. pylori predicted coding region HP0339 [Helicobacter
pylori 26695]
Length = 116
Score = 240 bits (613), Expect = 2e-63
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MDSEGFSPSIYTDKTGHPTIGYGYNLSVYSYEGKRITKTYGLLTDILSYGWYKNLDAMRR 60
MDSEGFSPSIYTDKTGHPTIGYGYNLSVYSYEGKRITKTYGLLTDILSYGWYKNLDAMRR
Sbjct: 1 MDSEGFSPSIYTDKTGHPTIGYGYNLSVYSYEGKRITKTYGLLTDILSYGWYKNLDAMRR 60
Query: 61 MVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAVERLQKSPYFNQVKKERQGIWKF 116
MVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAVERLQKSPYFNQVKKERQGIWKF
Sbjct: 61 MVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAVERLQKSPYFNQVKKERQGIWKF 116
>gb|AAL05265.1| (AY054410) lysozyme [Helicobacter pylori]
emb|CAD01140.1| (AJ417077) lysozyme [Helicobacter pylori]
Length = 124
Score = 229 bits (583), Expect = 6e-60
Identities = 114/124 (91%), Positives = 114/124 (91%), Gaps = 8/124 (6%)
Query: 1 MDSEGFSPSIYTDKTGHPTIGYGYNLSVYSYEGKRITKTYGLLTDIL--------SYGWY 52
MDSEGFSP IYTDKTGHPTIGYGYNLSVYSYEGKRITK YGLLTDIL SYGWY
Sbjct: 1 MDSEGFSPFIYTDKTGHPTIGYGYNLSVYSYEGKRITKAYGLLTDILKENHKALLSYGWY 60
Query: 53 KNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAVERLQKSPYFNQVKKERQG 112
KNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAVERLQKSPYFNQVKKERQG
Sbjct: 61 KNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAVERLQKSPYFNQVKKERQG 120
Query: 113 IWKF 116
IWKF
Sbjct: 121 IWKF 124
>gb|AAL99312.1| (AC116548) hypothetical protein [Dictyostelium discoideum]
Length = 170
Score = 50.1 bits (118), Expect = 5e-06
Identities = 21/54 (38%), Positives = 38/54 (69%)
Query: 52 YKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAVERLQKSPYFNQ 105
YKNLD +R+M I+++ + +G+N +L FK +K IE+K +A A + ++ S + +Q
Sbjct: 96 YKNLDNIRKMAIINMVFQMGVNNVLTFKMSLKLIEEKKWAEAAKEMKNSTWNHQ 149
>gb|AAL99313.1| (AC116548) hypothetical protein [Dictyostelium discoideum]
Length = 170
Score = 44.3 bits (103), Expect = 3e-04
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 52 YKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAVERLQKSPYFNQVKK 108
Y NLD+ R+M + ++ + +G + + KFK+ +K IE+K +A A L+ S + Q K
Sbjct: 96 YNNLDSNRKMALANMVFQMGASNVSKFKKSLKLIEEKKWAEAAIELKNSTWNTQTPK 152
>pdb|1L72| Lysozyme (E.C.3.2.1.17) (Mutant With Asp 127 Replaced By Ala, Glu
128 Replaced By Ala) (D127A,E128A)
Length = 164
Score = 43.1 bits (100), Expect = 6e-04
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K +A A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWAAAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1L28| Lysozyme (E.C.3.2.1.17) (Mutant With Pro 86 Replaced By Gly)
(P86G)
Length = 164
Score = 43.1 bits (100), Expect = 6e-04
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + G Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKGVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|192L| Mol_id: 1; Molecule: Lysozyme; Chain: Null; Ec: 3.2.1.17;
Engineered: Yes; Mutation: N40a, S44a, E45a, D47a, K48a,
C54t, C97a, D127a, E128a, V131a, N132a
Length = 164
Score = 43.1 bits (100), Expect = 6e-04
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLAAAKAALAAAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K +A A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWAAAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 AALAKSRWYNQ 141
>pdb|201L|B Chain B, Lysozyme (E.C.3.2.1.17) Insertion Mutant With His And Pro
Inserted After Lys 48, Cys 54 Replaced By Thr, Cys 97
Replaced By Ala (Ins(K48-Hp),C54t,C97a)
pdb|201L|A Chain A, Lysozyme (E.C.3.2.1.17) Insertion Mutant With His And Pro
Inserted After Lys 48, Cys 54 Replaced By Thr, Cys 97
Replaced By Ala (Ins(K48-Hp),C54t,C97a)
Length = 166
Score = 43.1 bits (100), Expect = 6e-04
Identities = 28/108 (25%), Positives = 52/108 (47%), Gaps = 9/108 (8%)
Query: 7 SPSIYTDKTG---HPTIGYGYNLSVYSYEGKRI------TKTYGLLTDILSYGWYKNLDA 57
SPS+ K+ HP IG N + E +++ G+L + Y +LDA
Sbjct: 36 SPSLNAAKSELDKHPAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDA 95
Query: 58 MRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAVERLQKSPYFNQ 105
+RR ++++ + +G G+ F ++ ++ K + A L KS ++NQ
Sbjct: 96 VRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQ 143
>pdb|1TLA| Lysozyme (E.C.3.2.1.17) (Mutant With Cys 54 Replaced By Thr, Cys
97 Replaced By Ala, Ser 117 Replaced By Phe)
(C54t,C97a,S117f)
Length = 164
Score = 43.1 bits (100), Expect = 6e-04
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F F++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNFLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1L73| Lysozyme (E.C.3.2.1.17) (Mutant With Asp 127 Replaced By Ala, Glu
128 Replaced By Ala, Val 131 Replaced By Ala, Asn 132
Replaced By Ala) (D127A,E128A,V131A,N132A)
Length = 164
Score = 43.1 bits (100), Expect = 6e-04
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K +A A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWAAAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 AALAKSRWYNQ 141
>pdb|1DYG| Sgamma97-Beta-Mercaptoethanol Lysozyme (E.C.3.2.1.17) Mutant With
Val 131 Replaced By Glu (V131e)
Length = 164
Score = 42.7 bits (99), Expect = 7e-04
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
E L KS ++NQ
Sbjct: 131 ENLAKSRWYNQ 141
>pdb|1L59| Lysozyme (E.C.3.2.1.17) (Mutant With Cys 54 Replaced By Thr, Cys
97 Replaced By Ala, Thr 109 Replaced By Asn)
(C54T,C97A,T109N)
Length = 164
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G NG+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGENGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1L10| Lysozyme (E.C.3.2.1.17) (Mutant With Thr 157 Replaced By Ile)
(T157i)
Length = 164
Score = 42.0 bits (97), Expect = 0.001
Identities = 34/148 (22%), Positives = 59/148 (38%), Gaps = 37/148 (25%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQVKKE--------RQGIW 114
L KS ++NQ R GIW
Sbjct: 131 VNLAKSRWYNQTPNRAKRVITTFRTGIW 158
>pdb|1G0P|A Chain A, Crystal Structure Of T4 Lysozyme Mutant V149g
Length = 164
Score = 42.0 bits (97), Expect = 0.001
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 30/143 (20%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQV-KKERQGIWKF 116
L KS ++NQ + ++GI F
Sbjct: 131 VNLAKSRWYNQTPNRAKRGITTF 153
>pdb|1L01| Lysozyme (E.C.3.2.1.17) (Double Mutant With Thr 155 Replaced By
Ala And Thr 157 Replaced By Ile) (T155a,T157i)
Length = 164
Score = 42.0 bits (97), Expect = 0.001
Identities = 34/148 (22%), Positives = 59/148 (38%), Gaps = 37/148 (25%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQVKKE--------RQGIW 114
L KS ++NQ R GIW
Sbjct: 131 VNLAKSRWYNQTPNRAKRVITTFRAGIW 158
>pdb|1LLH|A Chain A, Are Carboxy Terminii Of Helices Coded By The Local
Sequence Or By Tertiary Structure Contacts
Length = 164
Score = 42.0 bits (97), Expect = 0.001
Identities = 34/148 (22%), Positives = 59/148 (38%), Gaps = 37/148 (25%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQVKKE--------RQGIW 114
L KS ++NQ R GIW
Sbjct: 131 VNLAKSRWYNQTPNRAKRVITTFRTGIW 158
>pdb|160L| Lysozyme (E.C.3.2.1.17) Mutant With Cys 54 Replaced By Thr, Cys 97
Replaced By Ala, Met 120 Replaced By Ala
(C54t,C97a,M120a)
Length = 164
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++A++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRALQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1L51| Lysozyme (E.C.3.2.1.17) (Mutant With Ala 98 Replaced By Val, Val
149 Replaced By Ile, Thr 152 Replaced By Ser)
(A98V,V149I,T152S)
Length = 164
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 29/139 (20%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR V++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCVLINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQVKKERQGI 113
L KS ++NQ + I
Sbjct: 131 VNLAKSRWYNQTPNRAKRI 149
>pdb|127L| Lysozyme (E.C.3.2.1.17) Mutant With Cys 54 Replaced By Thr, Val 75
Replaced By Thr, Cys 97 Replaced By Ala (C54t,V75t,
C97a)
Length = 164
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
T G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAATRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1L15| Lysozyme (E.C.3.2.1.17) (Mutant With Thr 157 Replaced By Val)
(T157v)
Length = 164
Score = 41.6 bits (96), Expect = 0.002
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 37/148 (25%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQVKKE--------RQGIW 114
L KS ++NQ R G+W
Sbjct: 131 VNLAKSRWYNQTPNRAKRVITTFRTGVW 158
>pdb|1L49| Lysozyme (E.C.3.2.1.17) (Mutant With Ala 98 Replaced By Val, Thr
152 Replaced By Ser) (A98V,T152S)
Length = 164
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR V++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCVLINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1QUG|A Chain A, E108v Mutant Of T4 Lysozyme
Length = 162
Score = 41.6 bits (96), Expect = 0.002
Identities = 30/131 (22%), Positives = 56/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G+ G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGVTGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1L48| Lysozyme (E.C.3.2.1.17) (Mutant With Ala 98 Replaced By Val)
(A98V)
Length = 164
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR V++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCVLINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1DYA| Sgamma97-Beta-Mercaptoethanol Lysozyme (E.C.3.2.1.17) Mutant With
Val 131 Replaced By Asp (V131d)
Length = 164
Score = 41.6 bits (96), Expect = 0.002
Identities = 30/131 (22%), Positives = 56/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
+ L KS ++NQ
Sbjct: 131 DNLAKSRWYNQ 141
>pdb|1L50| Lysozyme (E.C.3.2.1.17) (Mutant With Ala 98 Replaced By Val, Val
149 Replaced By Cys, Thr 152 Replaced By Ser)
(A98V,V149C,T152S)
Length = 164
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR V++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCVLINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1QS9|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR V++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRAVLINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1L71| Lysozyme (E.C.3.2.1.17) (Mutant With Glu 128 Replaced By Ala, Val
131 Replaced By Ala) (E128A,V131A)
Length = 164
Score = 41.2 bits (95), Expect = 0.002
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDAAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 ANLAKSRWYNQ 141
>pdb|247L| The Response Of T4 Lysozyme To Large-To-Small Substitutions Within
The Core And Its Relation To The Hydrophobic Effect
Length = 164
Score = 41.2 bits (95), Expect = 0.002
Identities = 30/131 (22%), Positives = 56/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKAKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1L75| Lysozyme (E.C.3.2.1.17) (Mutant With Asp 127 Replaced By Ala, Glu
128 Replaced By Ala, Val 131 Replaced By Ala, Asn 132
Replaced By Ala, Leu 133 Replaced By Ala)
(D127A,E128A,V131A,N132A,L133A)
Length = 164
Score = 41.2 bits (95), Expect = 0.002
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K +A A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWAAAA 130
Query: 95 ERLQKSPYFNQ 105
KS ++NQ
Sbjct: 131 AAAAKSRWYNQ 141
>pdb|238L| The Response Of T4 Lysozyme To Large-To-Small Substitutions Within
The Core And Its Relation To The Hydrophobic Effect
Length = 164
Score = 41.2 bits (95), Expect = 0.002
Identities = 30/131 (22%), Positives = 56/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++++ +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRAALINMAFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1L11| Sgamma97-Beta-Mercaptoethanol-Lysozyme (E.C.3.2.1.17) (Mutant With
Thr 157 Replaced By Leu) (T157l)
Length = 164
Score = 41.2 bits (95), Expect = 0.002
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 37/148 (25%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQVKKE--------RQGIW 114
L KS ++NQ R G+W
Sbjct: 131 VNLAKSRWYNQTPNRAKRVITTFRTGLW 158
>pdb|1L25| Lysozyme (E.C.3.2.1.17) (Mutant With Pro 86 Replaced By Ala)
(P86A)
Length = 164
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKAVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1L38| Lysozyme (E.C.3.2.1.17) (Mutant With Gln 123 Replaced By Glu)
(Q123E)
Length = 164
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/131 (22%), Positives = 56/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ +++K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQEKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|191L| Mol_id: 1; Molecule: Lysozyme; Chain: Null; Ec: 3.2.1.17;
Engineered: Yes; Mutation: N53a, N55a, V57a, E128a,
V131a, N132a
Length = 164
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRACAGAITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDAAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 AALAKSRWYNQ 141
>pdb|1DYE| Lysozyme (E.C.3.2.1.17) Mutant With Val 131 Replaced By Ser
(V131s)
Length = 164
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 SNLAKSRWYNQ 141
>pdb|1L77| Lysozyme (E.C.3.2.1.17) (Mutant With Cys 54 Replaced By Thr, Cys
97 Replaced By Ala, Met 102 Replaced By Leu)
(C54t,C97a,M102l)
Length = 164
Score = 40.8 bits (94), Expect = 0.003
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR +++L + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRAALINLVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1L32| Lysozyme (E.C.3.2.1.17) (Mutant With Pro 86 Replaced By Ser)
(P86S)
Length = 164
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKSVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1L37| Lysozyme (E.C.3.2.1.17) (Mutant With Thr 115 Replaced By Glu)
(T115E)
Length = 164
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/131 (22%), Positives = 56/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F+ ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFENSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1L36| Lysozyme (E.C.3.2.1.17) Mutant With Glu 128 Replaced By Ala, Val
131 Replaced By Ala, Asn 132 Replaced By Ala (E128a,
V131a, N132a) (Three Alanine Substitutions)
Length = 164
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDAAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 AALAKSRWYNQ 141
>pdb|177L| Lysozyme (E.C.3.2.1.17) Mutant With Cys 54 Replaced By Thr, Cys 97
Replaced By Ala, Asp 127 Replaced By Cys, Arg 154
Replaced By Cys (C54t,C97a,D127c,R154c)
pdb|178L| Lysozyme (E.C.3.2.1.17) Mutant With Cys 54 Replaced By Thr, Cys 97
Replaced By Ala, Asp 127 Replaced By Cys, Arg 154
Replaced By Cys (C54t,C97a,D127c,R154c)
pdb|179L| Lysozyme (E.C.3.2.1.17) Mutant With Cys 54 Replaced By Ala, Cys 97
Replaced By Ala, Asp 127 Replaced By Cys, Arg 154
Replaced By Cys (C54a,C97a,D127c,R154c)
Length = 164
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWCEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1L92| Lysozyme (E.C.3.2.1.17) Mutant With Cys 54 Replaced By Thr, Cys 97
Replaced By Ala, Leu 99 Replaced By Ile (C54t,C97a,
L99i)
Length = 164
Score = 40.8 bits (94), Expect = 0.003
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR I+++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRAAIINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|234L| T4 Lysozyme Mutant M106l
Length = 164
Score = 40.8 bits (94), Expect = 0.003
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + LG G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQLGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1CU3|A Chain A, T4 Lysozyme Mutant V87m
Length = 164
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNLS-----------------------VYSYEGKRI---- 36
EG IY D G+ TIG G+ L+ + E +++
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 37 --TKTYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPMYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
>pdb|1QTB|A Chain A, The Introduction Of Strain And Its Effects On The
Structure And Stability Of T4 Lysozyme
Length = 162
Score = 40.4 bits (93), Expect = 0.004
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 29/131 (22%)
Query: 4 EGFSPSIYTDKTGHPTIGYGYNL-------SVYSYEGKRITK------------------ 38
EG IY D G+ TIG G+ L +V S K I +
Sbjct: 11 EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAVKSELDKAIGRNTNGVITKDEAEKLFNQD 70
Query: 39 ----TYGLLTDILSYGWYKNLDAMRRMVILDLSYNLGLNGLLKFKQFIKAIEDKNYALAV 94
G+L + Y +LDA+RR ++++ + +G G+ F ++ ++ K + A
Sbjct: 71 VDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAA 130
Query: 95 ERLQKSPYFNQ 105
L KS ++NQ
Sbjct: 131 VNLAKSRWYNQ 141
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.319 0.140 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,241,171
Number of Sequences: 1026957
Number of extensions: 2918917
Number of successful extensions: 6789
Number of sequences better than 1.0e-02: 44
Number of HSP's better than 0.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 6711
Number of HSP's gapped (non-prelim): 86
length of query: 116
length of database: 324,149,939
effective HSP length: 92
effective length of query: 24
effective length of database: 229,669,895
effective search space: 5512077480
effective search space used: 5512077480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 90 (39.3 bits)