BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644970|ref|NP_207140.1| hypothetical protein
[Helicobacter pylori 26695]
(130 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207140.1| (NC_000915) hypothetical protein [Helicoba... 254 9e-68
ref|NP_657467.1| (NC_003995) hypothetical protein predicted... 66 6e-11
ref|NP_390762.1| (NC_000964) ysdA [Bacillus subtilis] >gi|7... 62 9e-10
ref|NP_561468.1| (NC_003366) conserved hypothetical protein... 62 9e-10
ref|NP_244002.1| (NC_002570) BH3136~unknown conserved prote... 61 2e-09
ref|NP_266772.1| (NC_002662) UNKNOWN PROTEIN [Lactococcus l... 61 2e-09
ref|NP_345721.1| (NC_003028) conserved hypothetical protein... 58 2e-08
ref|NP_470178.1| (NC_003212) similar to B. subtilis protein... 54 2e-07
ref|NP_358727.1| (NC_003098) Conserved hypothetical protein... 54 2e-07
ref|NP_464369.1| (NC_003210) similar to B. subtilis protein... 53 5e-07
ref|NP_617166.1| (NC_003552) conserved hypothetical protein... 51 2e-06
ref|NP_642650.1| (NC_003919) integral membrane protein [Xan... 50 6e-06
gb|AAK28433.1| (AF251028) unknown [Streptococcus gordonii] 48 2e-05
ref|NP_455872.1| (NC_003198) putative membrane protein [Sal... 47 4e-05
ref|NP_460591.1| (NC_003197) putative inner membrane protei... 47 5e-05
ref|NP_250650.1| (NC_002516) hypothetical protein [Pseudomo... 45 2e-04
ref|NP_532013.1| (NC_003304) conserved hypothetical protein... 44 3e-04
ref|NP_354329.1| (NC_003062) AGR_C_2437p [Agrobacterium tum... 44 3e-04
ref|NP_269473.1| (NC_002737) hypothetical protein [Streptoc... 43 7e-04
ref|NP_637585.1| (NC_003902) integral membrane protein [Xan... 42 0.001
ref|NP_634895.1| (NC_003901) hypothetical protein [Methanos... 42 0.002
ref|NP_607475.1| (NC_003485) hypothetical protein [Streptoc... 42 0.002
>ref|NP_207140.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64562 hypothetical protein HP0342 - Helicobacter pylori (strain 26695)
gb|AAD07413.1| (AE000551) H. pylori predicted coding region HP0342 [Helicobacter
pylori 26695]
Length = 130
Score = 254 bits (650), Expect = 9e-68
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MSVEFASIVWLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVS 60
MSVEFASIVWLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVS
Sbjct: 1 MSVEFASIVWLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVS 60
Query: 61 HHKILKPEFKYGVSLIYLIESTILYFVSKDLSWIVALTIFSLSLILVAFKIFLLKDNPNK 120
HHKILKPEFKYGVSLIYLIESTILYFVSKDLSWIVALTIFSLSLILVAFKIFLLKDNPNK
Sbjct: 61 HHKILKPEFKYGVSLIYLIESTILYFVSKDLSWIVALTIFSLSLILVAFKIFLLKDNPNK 120
Query: 121 RFKNNKRDKK 130
RFKNNKRDKK
Sbjct: 121 RFKNNKRDKK 130
>ref|NP_657467.1| (NC_003995) hypothetical protein predicted by GeneMark [Bacillus
anthracis A2012] [Bacillus anthracis str. A2012]
Length = 82
Score = 66.2 bits (160), Expect = 6e-11
Identities = 28/79 (35%), Positives = 49/79 (61%)
Query: 9 VWLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPE 68
++ +++N++ F LM +DK A +K WR PE L++ + GG+VG + M HHK K +
Sbjct: 4 IYFILINVIAFSLMGLDKRKAKKKQWRTPESTLFLSAAAGGAVGAWIGMYTFHHKTHKKK 63
Query: 69 FKYGVSLIYLIESTILYFV 87
F +G+ L+ +I +L+ V
Sbjct: 64 FVFGIPLLVVITICLLFAV 82
>ref|NP_390762.1| (NC_000964) ysdA [Bacillus subtilis]
pir||G69983 hypothetical protein ysdA - Bacillus subtilis
emb|CAA99583.1| (Z75208) hypothetical protein [Bacillus subtilis]
emb|CAB14844.1| (Z99118) ysdA [Bacillus subtilis]
Length = 89
Score = 62.4 bits (150), Expect = 9e-10
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 10 WLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPEF 69
+L+++N+ F +M +DK A Q WRI E LW+++++ G++G + M HK F
Sbjct: 6 YLVLINLCGFWVMGIDKRKAQQHKWRISEDRLWLIAIVFGALGVWLGMQTFRHKTKHASF 65
Query: 70 KYGVSLIYLIESTI--LYFVSKDL 91
KYGV L+ +IE+ + +Y+ DL
Sbjct: 66 KYGVPLLLVIEAILIAIYYSPFDL 89
>ref|NP_561468.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB80258.1| (AP003187) conserved hypothetical protein [Clostridium
perfringens]
Length = 87
Score = 62.4 bits (150), Expect = 9e-10
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 10 WLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPEF 69
+L+++N++ ILM +DK A + WRI E L +S++GG +G L M V HK +F
Sbjct: 8 YLIVINLVAIILMYIDKQKAKKHQWRISEDTLIGVSIIGGGIGALWGMHVFRHKTKHAKF 67
Query: 70 KYGVSLIYLIES-TILYFV 87
G+ LI I++ ILYF+
Sbjct: 68 TIGIPLIIAIQALLILYFI 86
>ref|NP_244002.1| (NC_002570) BH3136~unknown conserved protein [Bacillus
halodurans]
dbj|BAB06855.1| (AP001517) BH3136~unknown conserved protein [Bacillus halodurans]
Length = 94
Score = 60.8 bits (146), Expect = 2e-09
Identities = 30/89 (33%), Positives = 49/89 (54%), Gaps = 2/89 (2%)
Query: 4 EFASIVWLLIVNILI--FILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSH 61
EF + +L + ++ + F +M +DK A WR PEK LW+++LLGGS+G M
Sbjct: 3 EFLFVFFLYVGSLTVIGFAVMGLDKQKARTGRWRTPEKTLWLIALLGGSIGVFAGMRYFR 62
Query: 62 HKILKPEFKYGVSLIYLIESTILYFVSKD 90
HK F G+ L+ +++ IL ++ D
Sbjct: 63 HKTKHASFSVGLPLLIVVQLMILAYIFYD 91
>ref|NP_266772.1| (NC_002662) UNKNOWN PROTEIN [Lactococcus lactis subsp. lactis]
gb|AAK04714.1|AE006294_9 (AE006294) UNKNOWN PROTEIN [Lactococcus lactis subsp. lactis]
Length = 91
Score = 60.8 bits (146), Expect = 2e-09
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 8 IVWLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKP 67
+V L + N+++F+ VDK A +WRIPEK L +LLGG G ++A + HHK K
Sbjct: 6 LVLLAVWNLIVFVFYAVDKYKAQHHLWRIPEKVLLAQALLGGGTGAILAGHLCHHKTRKW 65
Query: 68 EFKYGVSLIYLIESTILYFVSK 89
F + + L+++ +++ + K
Sbjct: 66 YFNFSWYVGLLVDAGLIFLIIK 87
>ref|NP_345721.1| (NC_003028) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
gb|AAK75361.1| (AE007425) conserved hypothetical protein [Streptococcus
pneumoniae TIGR4]
Length = 89
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/77 (38%), Positives = 46/77 (58%)
Query: 11 LLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPEFK 70
LLI N++IF++ +DK+ A +++WRIPEK L +L+ G G +A ++ HHK K FK
Sbjct: 11 LLIWNVIIFLIYGIDKSKARRRVWRIPEKILLILAFTFGGFGAWLAGIIFHHKTRKWYFK 70
Query: 71 YGVSLIYLIESTILYFV 87
L + LYF+
Sbjct: 71 IVWFLGMVTTLVALYFI 87
>ref|NP_470178.1| (NC_003212) similar to B. subtilis protein YsdA [Listeria
innocua]
emb|CAC96068.1| (AL596166) similar to B. subtilis protein YsdA [Listeria innocua]
Length = 85
Score = 54.3 bits (129), Expect = 2e-07
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 9 VWLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPE 68
++L+ + ++ F+L VDK A + +RIPE L + + LGG+ G ++M + HHK KP+
Sbjct: 5 IYLIAITLISFLLFAVDKRKAIKHAYRIPESVLLLSAFLGGAFGSWMSMQLFHHKTQKPK 64
Query: 69 FKYGVSL 75
F+ V L
Sbjct: 65 FRILVPL 71
>ref|NP_358727.1| (NC_003098) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
gb|AAK99937.1| (AE008486) Conserved hypothetical protein [Streptococcus
pneumoniae R6]
Length = 89
Score = 54.3 bits (129), Expect = 2e-07
Identities = 30/77 (38%), Positives = 43/77 (54%)
Query: 11 LLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPEFK 70
LLI N++IF++ +DK A ++ WRIPEK L +L+L G G + + HHK K FK
Sbjct: 11 LLIWNVIIFLIYGIDKFKARRRAWRIPEKILLILALTCGGFGAWLTGITFHHKTRKWYFK 70
Query: 71 YGVSLIYLIESTILYFV 87
L + LYF+
Sbjct: 71 TVWFLGMVTTLVALYFI 87
>ref|NP_464369.1| (NC_003210) similar to B. subtilis protein YsdA [Listeria
monocytogenes EGD-e]
emb|CAC98921.1| (AL591976) similar to B. subtilis protein YsdA [Listeria
monocytogenes]
Length = 85
Score = 53.1 bits (126), Expect = 5e-07
Identities = 24/67 (35%), Positives = 41/67 (60%)
Query: 9 VWLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPE 68
++L+ + ++ F+L +DK A + +RIPE L + LGG+ G ++M + HHK KP+
Sbjct: 5 IYLIAITLISFLLFAIDKRKAIKHAYRIPESVLLFSAFLGGAFGSWMSMQLFHHKTQKPK 64
Query: 69 FKYGVSL 75
F+ V L
Sbjct: 65 FRILVPL 71
>ref|NP_617166.1| (NC_003552) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
gb|AAM05646.1| (AE010912) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 90
Score = 51.2 bits (121), Expect = 2e-06
Identities = 30/72 (41%), Positives = 42/72 (57%), Gaps = 4/72 (5%)
Query: 3 VEFASIVWLLI---VNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVV 59
VE I++L I +N + F L +DK+ A +K+WRIPEK L +SL G +G M+
Sbjct: 2 VETVYIIFLFIYAALNAVSFTLYGLDKSKARKKIWRIPEKTLLTISLF-GPIGAWFGMMQ 60
Query: 60 SHHKILKPEFKY 71
HK KP F+Y
Sbjct: 61 FRHKTQKPMFRY 72
>ref|NP_642650.1| (NC_003919) integral membrane protein [Xanthomonas axonopodis pv.
citri str. 306]
gb|AAM37186.1| (AE011870) integral membrane protein [Xanthomonas axonopodis pv.
citri str. 306]
Length = 206
Score = 49.7 bits (117), Expect = 6e-06
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 9 VWLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPE 68
+W +++ ++ +DK++A + WR PE +L +L+L+GG G L+A + HK K
Sbjct: 113 LWYAAASLVTLLIYAMDKSAAQRNQWRTPESSLHLLALIGGWPGALLAQEIHRHKCSKAA 172
Query: 69 FK--YGVSLIYLIESTILYFVSKDL 91
F+ + +++ + + +L DL
Sbjct: 173 FQLTFWLTVALNVSALVLAVTETDL 197
>gb|AAK28433.1| (AF251028) unknown [Streptococcus gordonii]
Length = 88
Score = 48.1 bits (113), Expect = 2e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 12 LIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPEFKY 71
L+ N+++F+L DK A + +RIPEK L + +L+ G +G L+ + HHK K F
Sbjct: 10 LLWNLVVFLLYGWDKRKAKKNHYRIPEKTLLLSALVAGGLGALLGGCLFHHKTRKWYFWL 69
Query: 72 GVSLIYLIESTILYFV 87
++E ILY++
Sbjct: 70 AWICGIIVEIGILYYI 85
>ref|NP_455872.1| (NC_003198) putative membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD01699.1| (AL627270) putative membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 114
Score = 47.0 bits (110), Expect = 4e-05
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 9 VWLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPE 68
+W L+ N+L + VDK +A + R+PE L V ++GG G +V + HK K
Sbjct: 27 MWFLLANVLTLAIYGVDKTAARKTWRRVPESTLLVFGVVGGWPGAIVGQQLFRHKTQKQP 86
Query: 69 FKYGVSLIYLIESTILYFV 87
FK Y I S I+ V
Sbjct: 87 FK-----TYFIASVIVSIV 100
>ref|NP_460591.1| (NC_003197) putative inner membrane protein [Salmonella typhimurium
LT2]
gb|AAL20550.1| (AE008772) putative inner membrane protein [Salmonella typhimurium
LT2]
Length = 114
Score = 46.6 bits (109), Expect = 5e-05
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 9 VWLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPE 68
+W L+ N+L + +DK +A + R+PE L V ++GG G +V + HK K
Sbjct: 27 MWFLLANVLTLAIYGIDKTAARKTWRRVPESTLLVFGVVGGWPGAIVGQQLFRHKTQKQP 86
Query: 69 FK--YGVSLIYLIESTILYF 86
FK + VS+I I T+ +
Sbjct: 87 FKTYFIVSVIVSILVTVAIY 106
>ref|NP_250650.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa]
pir||G83401 hypothetical protein PA1960 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG05348.1|AE004622_10 (AE004622) hypothetical protein [Pseudomonas aeruginosa]
Length = 240
Score = 44.7 bits (104), Expect = 2e-04
Identities = 27/68 (39%), Positives = 37/68 (53%), Gaps = 3/68 (4%)
Query: 13 IVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPEFK-- 70
+ ++L F L DK SA + WR PE L + LLGG G LVA V HK K F+
Sbjct: 151 LASLLAFALYWRDKRSAARGDWRTPEVRLHLFELLGGWPGALVAQQVFRHKTRKLSFQLV 210
Query: 71 -YGVSLIY 77
+G+ L++
Sbjct: 211 FWGIVLLH 218
>ref|NP_532013.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL42329.1| (AE009094) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 137
Score = 43.9 bits (102), Expect = 3e-04
Identities = 23/83 (27%), Positives = 45/83 (53%)
Query: 15 NILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPEFKYGVS 74
N+ +F++ D+ +A WRI E L L+L+GGS+G + A + HK K F+ +
Sbjct: 42 NLFVFLVYWWDRQAARNSGWRIRESTLLSLALVGGSMGAISAQQLLRHKTRKEPFRSILL 101
Query: 75 LIYLIESTILYFVSKDLSWIVAL 97
I ++++ ++ ++ W + L
Sbjct: 102 TIVILQAGLVASLAIMPDWPMQL 124
>ref|NP_354329.1| (NC_003062) AGR_C_2437p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK87114.1| (AE008059) AGR_C_2437p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 152
Score = 43.9 bits (102), Expect = 3e-04
Identities = 23/83 (27%), Positives = 45/83 (53%)
Query: 15 NILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPEFKYGVS 74
N+ +F++ D+ +A WRI E L L+L+GGS+G + A + HK K F+ +
Sbjct: 57 NLFVFLVYWWDRQAARNSGWRIRESTLLSLALVGGSMGAISAQQLLRHKTRKEPFRSILL 116
Query: 75 LIYLIESTILYFVSKDLSWIVAL 97
I ++++ ++ ++ W + L
Sbjct: 117 TIVILQAGLVASLAIMPDWPMQL 139
>ref|NP_269473.1| (NC_002737) hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK34194.1| (AE006574) hypothetical protein [Streptococcus pyogenes M1 GAS]
Length = 87
Score = 42.7 bits (99), Expect = 7e-04
Identities = 27/85 (31%), Positives = 41/85 (47%), Gaps = 3/85 (3%)
Query: 8 IVWL---LIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKI 64
++WL + N L+F++ DK A +K RI E+ L V+++L G G L+A HHK
Sbjct: 3 LIWLGLLFVWNELVFVIYAFDKRKAIKKKRRISERKLLVITVLFGGFGALLAAKKYHHKT 62
Query: 65 LKPEFKYGVSLIYLIESTILYFVSK 89
K F L+ + Y K
Sbjct: 63 RKWYFVITCYTSILLTLLVTYIFMK 87
>ref|NP_637585.1| (NC_003902) integral membrane protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gb|AAM41509.1| (AE012330) integral membrane protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 204
Score = 42.4 bits (98), Expect = 0.001
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 8 IVWLLIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKP 67
++W + + + + +DK++A + WR PE L ++ +LGG G L+A HK K
Sbjct: 110 LLWYVAASGVAVLAYAIDKSAAQRNQWRTPEATLHLIGVLGGWPGALLAQEWFRHKCSKA 169
Query: 68 EFK 70
F+
Sbjct: 170 AFQ 172
>ref|NP_634895.1| (NC_003901) hypothetical protein [Methanosarcina mazei Goe1]
gb|AAM32567.1| (AE013538) hypothetical protein [Methanosarcina mazei Goe1]
Length = 91
Score = 41.6 bits (96), Expect = 0.002
Identities = 22/62 (35%), Positives = 35/62 (55%), Gaps = 1/62 (1%)
Query: 12 LIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKILKPEFKY 71
+ +N + F L +DK A ++ WRI E++L + + G +G + MV HK KP F+Y
Sbjct: 14 IALNAVSFALYGMDKYKARKEKWRISEQSLLIAAFF-GPIGAWLGMVQFRHKTQKPLFRY 72
Query: 72 GV 73
V
Sbjct: 73 SV 74
>ref|NP_607475.1| (NC_003485) hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAL97974.1| (AE010058) hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 87
Score = 41.6 bits (96), Expect = 0.002
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 8 IVWL---LIVNILIFILMLVDKNSADQKMWRIPEKALWVLSLLGGSVGFLVAMVVSHHKI 64
++WL + N L+F++ DK A +K RI E+ L V+++L G G L+A HHK
Sbjct: 3 LIWLGLLFVWNELVFVIYAFDKRKAIKKKRRISERNLLVITVLFGGFGALLAAKKYHHKT 62
Query: 65 LK 66
K
Sbjct: 63 RK 64
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.328 0.143 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,903,923
Number of Sequences: 1026957
Number of extensions: 2692558
Number of successful extensions: 10392
Number of sequences better than 1.0e-02: 22
Number of HSP's better than 0.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10370
Number of HSP's gapped (non-prelim): 22
length of query: 130
length of database: 324,149,939
effective HSP length: 106
effective length of query: 24
effective length of database: 215,292,497
effective search space: 5167019928
effective search space used: 5167019928
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 90 (39.3 bits)