BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644971|ref|NP_207141.1| hypothetical protein
[Helicobacter pylori 26695]
         (140 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207141.1|  (NC_000915) hypothetical protein [Helicoba...   285  5e-77

>ref|NP_207141.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64562 hypothetical protein HP0343 - Helicobacter pylori (strain 26695)
 gb|AAD07414.1| (AE000551) H. pylori predicted coding region HP0343 [Helicobacter
           pylori 26695]
          Length = 140

 Score =  285 bits (730), Expect = 5e-77
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MSYFFKIILGTSVIVGVLLGLWRLTYDKFYFSLVFVLLILGIVACSYISLKMHQRKCFAK 60
           MSYFFKIILGTSVIVGVLLGLWRLTYDKFYFSLVFVLLILGIVACSYISLKMHQRKCFAK
Sbjct: 1   MSYFFKIILGTSVIVGVLLGLWRLTYDKFYFSLVFVLLILGIVACSYISLKMHQRKCFAK 60

Query: 61  CFVNSESFLSKMLHSPIMVICFYFIFSIFTSISIVYSVLDYDQMMWGFVFCTIVVCAVVF 120
           CFVNSESFLSKMLHSPIMVICFYFIFSIFTSISIVYSVLDYDQMMWGFVFCTIVVCAVVF
Sbjct: 61  CFVNSESFLSKMLHSPIMVICFYFIFSIFTSISIVYSVLDYDQMMWGFVFCTIVVCAVVF 120

Query: 121 GTLEKNAQEYHQRRLFDADV 140
           GTLEKNAQEYHQRRLFDADV
Sbjct: 121 GTLEKNAQEYHQRRLFDADV 140



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.338    0.147    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,982,980
Number of Sequences: 1026957
Number of extensions: 2991260
Number of successful extensions: 13923
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13922
Number of HSP's gapped (non-prelim): 1
length of query: 140
length of database: 324,149,939
effective HSP length: 116
effective length of query: 24
effective length of database: 205,022,927
effective search space: 4920550248
effective search space used: 4920550248
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 89 (38.9 bits)