BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644974|ref|NP_207144.1| hypothetical protein
[Helicobacter pylori 26695]
         (260 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207144.1|  (NC_000915) hypothetical protein [Helicoba...   518  e-146

>ref|NP_207144.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||B64563 hypothetical protein HP0346 - Helicobacter pylori (strain 26695)
 gb|AAD07417.1| (AE000551) H. pylori predicted coding region HP0346 [Helicobacter
           pylori 26695]
          Length = 260

 Score =  518 bits (1335), Expect = e-146
 Identities = 260/260 (100%), Positives = 260/260 (100%)

Query: 1   MDKFLDWHYSVKGDYSELALFVAKKIGLSAEDAVANVLQEKLLGKDYKQRLDAITKKLSK 60
           MDKFLDWHYSVKGDYSELALFVAKKIGLSAEDAVANVLQEKLLGKDYKQRLDAITKKLSK
Sbjct: 1   MDKFLDWHYSVKGDYSELALFVAKKIGLSAEDAVANVLQEKLLGKDYKQRLDAITKKLSK 60

Query: 61  TYGSLLNQHEKFVSETALKGVDTDLSQNAKILDTLGDEVARKLKANFTGAIGATAGVSGL 120
           TYGSLLNQHEKFVSETALKGVDTDLSQNAKILDTLGDEVARKLKANFTGAIGATAGVSGL
Sbjct: 61  TYGSLLNQHEKFVSETALKGVDTDLSQNAKILDTLGDEVARKLKANFTGAIGATAGVSGL 120

Query: 121 AIAAKLTPKLMAKIGAKLGAKVGGKFLAKIGTALSGSWTCGPFVPACTIGLWFGSDAAFN 180
           AIAAKLTPKLMAKIGAKLGAKVGGKFLAKIGTALSGSWTCGPFVPACTIGLWFGSDAAFN
Sbjct: 121 AIAAKLTPKLMAKIGAKLGAKVGGKFLAKIGTALSGSWTCGPFVPACTIGLWFGSDAAFN 180

Query: 181 YIDEWLHRDDFKKEILNNINEVKENLKNSYKQQFNDSFVKISQEFQKSFKNAPVVEKKTI 240
           YIDEWLHRDDFKKEILNNINEVKENLKNSYKQQFNDSFVKISQEFQKSFKNAPVVEKKTI
Sbjct: 181 YIDEWLHRDDFKKEILNNINEVKENLKNSYKQQFNDSFVKISQEFQKSFKNAPVVEKKTI 240

Query: 241 KEHIGDLNQTPEEDNQKINQ 260
           KEHIGDLNQTPEEDNQKINQ
Sbjct: 241 KEHIGDLNQTPEEDNQKINQ 260



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.314    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,471,753
Number of Sequences: 1026957
Number of extensions: 6331711
Number of successful extensions: 20832
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20825
Number of HSP's gapped (non-prelim): 1
length of query: 260
length of database: 324,149,939
effective HSP length: 119
effective length of query: 141
effective length of database: 201,942,056
effective search space: 28473829896
effective search space used: 28473829896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 96 (41.6 bits)