BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644978|ref|NP_207148.1| hypothetical protein
[Helicobacter pylori 26695]
(222 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207148.1| (NC_000915) hypothetical protein [Helicoba... 429 e-119
ref|NP_223043.1| (NC_000921) putative [Helicobacter pylori ... 350 7e-96
ref|NP_207644.1| (NC_000915) conserved hypothetical integra... 91 7e-18
ref|NP_223505.1| (NC_000921) putative [Helicobacter pylori ... 84 1e-15
ref|NP_471459.1| (NC_003212) similar to unknown proteins [L... 74 2e-12
ref|NP_465541.1| (NC_003210) similar to unknown proteins [L... 72 3e-12
ref|NP_389846.1| (NC_000964) similar to hypothetical protei... 63 3e-09
gb|AAB81162.1| (AF006665) YokW [Bacillus subtilis] 61 1e-08
ref|NP_471000.1| (NC_003212) similar to unknown proteins [L... 48 9e-05
pir||S32217 hypothetical protein 2 - Bacillus megaterium >g... 46 3e-04
ref|NP_267161.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococ... 45 4e-04
gb|AAK25787.1|AF336821_1 (AF336821) putative phosphatase [S... 45 6e-04
ref|NP_268696.1| (NC_002737) conserved hypothetical protein... 45 6e-04
ref|NP_465148.1| (NC_003210) similar to unknown proteins [L... 45 6e-04
ref|NP_606668.1| (NC_003485) conserved hypothetical protein... 44 0.001
gb|AAC45388.1| (U81488) putative phosphatidic acid phosphat... 44 0.001
gb|AAK25788.1|AF336822_1 (AF336822) putative phosphatase [S... 44 0.001
gb|AAL10144.1| (AF407531) NADH dehydrogenase subunit 2 [Var... 41 0.008
>ref|NP_207148.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||F64563 hypothetical protein HP0350 - Helicobacter pylori (strain 26695)
gb|AAD07425.1| (AE000552) H. pylori predicted coding region HP0350 [Helicobacter
pylori 26695]
Length = 222
Score = 429 bits (1103), Expect = e-119
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MAENSFKNVSTQPKVFFLLPAKTLFLLGGVFSAFFILIAGLVFFDYAHLMDNAIFNFARS 60
MAENSFKNVSTQPKVFFLLPAKTLFLLGGVFSAFFILIAGLVFFDYAHLMDNAIFNFARS
Sbjct: 1 MAENSFKNVSTQPKVFFLLPAKTLFLLGGVFSAFFILIAGLVFFDYAHLMDNAIFNFARS 60
Query: 61 TPFNSSPILTLILQNIANLGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALL 120
TPFNSSPILTLILQNIANLGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALL
Sbjct: 61 TPFNSSPILTLILQNIANLGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALL 120
Query: 121 ESLKHLFAYSIQWLSRSANFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLI 180
ESLKHLFAYSIQWLSRSANFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLI
Sbjct: 121 ESLKHLFAYSIQWLSRSANFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLI 180
Query: 181 FLIGLALIVLGVSFSSVLGGFCLGALGACFSIGIYLSVFQKI 222
FLIGLALIVLGVSFSSVLGGFCLGALGACFSIGIYLSVFQKI
Sbjct: 181 FLIGLALIVLGVSFSSVLGGFCLGALGACFSIGIYLSVFQKI 222
>ref|NP_223043.1| (NC_000921) putative [Helicobacter pylori J99]
pir||D71946 hypothetical protein jhp0324 - Helicobacter pylori (strain J99)
gb|AAD05898.1| (AE001468) putative [Helicobacter pylori J99]
Length = 220
Score = 350 bits (898), Expect = 7e-96
Identities = 184/222 (82%), Positives = 194/222 (86%), Gaps = 2/222 (0%)
Query: 1 MAENSFKNVSTQPKVFFLLPAKTLFLLGGVFSAFFILIAGLVFFDYAHLMDNAIFNFARS 60
MAENSFKNVS QPK FFLLP KTLFLLGGVFSAFFILIAGLVFFDYA+ MDNAIFN RS
Sbjct: 1 MAENSFKNVSIQPKPFFLLPVKTLFLLGGVFSAFFILIAGLVFFDYANSMDNAIFNLMRS 60
Query: 61 TPFNSSPILTLILQNIANLGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALL 120
+S+PIL LQ I LGSSQFVLPLSLLVGVFLSLYR+NL LGVWFVLSV++FEALL
Sbjct: 61 N--SSNPILDQTLQRIVFLGSSQFVLPLSLLVGVFLSLYRKNLALGVWFVLSVVIFEALL 118
Query: 121 ESLKHLFAYSIQWLSRSANFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLI 180
ESLKHL A+SIQWLS SANFP+ ALSL LFYGLLILLIPH I HQ +N+L YSLFGLI
Sbjct: 119 ESLKHLLAHSIQWLSHSANFPSTIALSLALFYGLLILLIPHFIAHQIFQNILSYSLFGLI 178
Query: 181 FLIGLALIVLGVSFSSVLGGFCLGALGACFSIGIYLSVFQKI 222
LIGLALIVLGVSFSSVLGG CLGALGACFSIGIYLSVFQKI
Sbjct: 179 LLIGLALIVLGVSFSSVLGGVCLGALGACFSIGIYLSVFQKI 220
>ref|NP_207644.1| (NC_000915) conserved hypothetical integral membrane protein
[Helicobacter pylori 26695]
pir||C64626 conserved hypothetical integral membrane protein HP0851 -
Helicobacter pylori (strain 26695)
gb|AAD07899.1| (AE000596) conserved hypothetical integral membrane protein
[Helicobacter pylori 26695]
Length = 227
Score = 91.3 bits (225), Expect = 7e-18
Identities = 68/211 (32%), Positives = 110/211 (51%), Gaps = 12/211 (5%)
Query: 21 AKTLFLLGGVFSAFF-ILIAGLVFF-DYAHLMDNAIFNFARS-TPFNSSPILTLILQNIA 77
AKTL ++G VF F I+I+G+ F ++ +D + R+ P S L+ + +
Sbjct: 15 AKTLGIIGIVFFILFGIVISGVAFQKEWVQQLDLFFIDLIRNPAPIQKSAWLSFVFFSTW 74
Query: 78 NLGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESLKHLFAYSIQW---- 133
S+ P++LL+G++ +R + LGVWF S++L E L+SLK L A
Sbjct: 75 -FAQSKLTTPIALLIGLWFGFQKR-IALGVWFFFSILLGEFTLKSLKLLVARPRPVTNGE 132
Query: 134 --LSRSANFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLG 191
+ +FP+ AL+ LFYG L LL+ + + +K ++ L IFL+ + LG
Sbjct: 133 LVFAHGFSFPSGHALASALFYGSLALLLCYSNANNRIKTIIAVVLLFWIFLMAYDRVYLG 192
Query: 192 VSF-SSVLGGFCLGALGACFSIGIYLSVFQK 221
V + S VLGGF LG +C S+ +YL ++
Sbjct: 193 VHYPSDVLGGFLLGIAWSCCSLALYLGFLKR 223
>ref|NP_223505.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71886 hypothetical protein jhp0787 - Helicobacter pylori (strain J99)
gb|AAD06379.1| (AE001509) putative [Helicobacter pylori J99]
Length = 228
Score = 83.6 bits (205), Expect = 1e-15
Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 12/211 (5%)
Query: 21 AKTLFLLGGVFSAFF-ILIAGLVFF-DYAHLMDNAIFNFARS-TPFNSSPILTLILQNIA 77
AK L ++G VF F I+I+G+ ++ +D + R+ P S L+ + +
Sbjct: 15 AKALGIVGIVFFILFGIVISGVASQKEWVQQLDLFFIDLIRNPAPIQGSTWLSFVFFSTW 74
Query: 78 NLGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESLKHLFAYSIQW---- 133
S+ P++LL+G++ +R + LGVWF S++L E L+SLK L A
Sbjct: 75 -FAQSKLTTPIALLIGLWFGFQKR-IALGVWFFFSILLGEFTLKSLKLLVARPRPVTNGE 132
Query: 134 --LSRSANFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLG 191
+ +FP+ AL+ LFYG L LL+ + + +K + L IFL+ + LG
Sbjct: 133 LVFAHGFSFPSGHALASALFYGSLALLLCYSNANNRIKTIGAIILLFWIFLMAYDRVYLG 192
Query: 192 VSF-SSVLGGFCLGALGACFSIGIYLSVFQK 221
V + S VLGGF LG +C S+ +YL ++
Sbjct: 193 VHYPSDVLGGFLLGIAWSCCSLALYLGFLKR 223
>ref|NP_471459.1| (NC_003212) similar to unknown proteins [Listeria innocua]
emb|CAC97355.1| (AL596171) similar to unknown proteins [Listeria innocua]
Length = 231
Score = 73.6 bits (179), Expect = 2e-12
Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 10/206 (4%)
Query: 21 AKTLFLLGGVFSAFFILIAGLVFFDYAHLMDNAIFNFARSTPFNSSPILTLILQNIANLG 80
A LF++GG FI IA + + ++ + ++ P T I++ + NLG
Sbjct: 8 ATPLFVIGGFCLILFITIASAIATE-SNWVARFDLSWIEKIRGGIQPDKTAIVKLVTNLG 66
Query: 81 SSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLES-LKHLFAY----SIQWLS 135
S++ + L+++V V + + R V+G+WF +++ +L LK L A S+ WL
Sbjct: 67 SAETTIILTIVV-VLILFFLRKFVVGLWFGGTMLACGVVLNLVLKTLVARTRPDSVNWLI 125
Query: 136 RSA--NFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGVS 193
+ +FP+ A + +FYGL + + + K V+ +G I + + LGV
Sbjct: 126 DESGFSFPSGHATATAVFYGLAAMFLIFTVPKMWQKIVIGIIGYGFILFVMYTRVYLGVH 185
Query: 194 F-SSVLGGFCLGALGACFSIGIYLSV 218
F + VLGGF LG S+G+Y V
Sbjct: 186 FPTDVLGGFLLGTASVLISLGVYFLV 211
>ref|NP_465541.1| (NC_003210) similar to unknown proteins [Listeria monocytogenes
EGD-e]
emb|CAD00095.1| (AL591981) similar to unknown proteins [Listeria monocytogenes]
Length = 231
Score = 72.4 bits (176), Expect = 3e-12
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 10/206 (4%)
Query: 21 AKTLFLLGGVFSAFFILIAGLVFFDYAHLMDNAIFNFARSTPFNSSPILTLILQNIANLG 80
A LF++GG FI IA + + ++ + ++ P T I++ + LG
Sbjct: 8 ATPLFVIGGFCLILFITIASAIATE-SNWVARFDLSWIEKIRSGIQPDKTAIVKFLTTLG 66
Query: 81 SSQFVLPLSLLVGVFLSLYRRNLVLGVWF-----VLSVILFEALLESLKHLFAYSIQWLS 135
S++ + L+++V V + + R V+G+WF V V+L L + S+ WL
Sbjct: 67 SAETTIILTIVV-VLILFFLRKFVVGLWFGGTMLVCGVVLNLVLKSLVGRTRPASVNWLV 125
Query: 136 RSA--NFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGVS 193
+ +FP+ A + +FYGL + + + K V+ +G I + + LGV
Sbjct: 126 SESGFSFPSGHATATAVFYGLAAMFLIFTVPKMWQKIVIGIIGYGFILFVMYTRVYLGVH 185
Query: 194 F-SSVLGGFCLGALGACFSIGIYLSV 218
F + VLGGF LG S+G+Y V
Sbjct: 186 FPTDVLGGFFLGTASVFISLGVYFLV 211
>ref|NP_389846.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
pir||H69903 conserved hypothetical protein yodM - Bacillus subtilis
gb|AAB72067.1| (AF015775) YodM [Bacillus subtilis]
emb|CAB13856.1| (Z99114) similar to hypothetical proteins [Bacillus subtilis]
Length = 203
Score = 62.8 bits (151), Expect = 3e-09
Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 34 FFILIAGLVFFDYAHLMDNAIFNFARSTPFNSSPILTLILQNIANLGSSQFVLPLSLLVG 93
FF+++A + + D AI +++ P L ++ I +LG+S F+LPL +++G
Sbjct: 10 FFLILAAAIHTNAVQSADEAI---SKAAVLIRQPWLNEVMTGITHLGASSFLLPLIVIIG 66
Query: 94 VFLSLYRRN-------LVLGVWFVLSVILFEALLESLKHLFAYSIQWLSRSANFPNATAL 146
+ YR+ LV G +L+ +L E +E ++ FA + S +FP+ ++
Sbjct: 67 AGMFFYRKTWDGLLMLLVFGTDRLLNKVLKE-WIERVRPDFAPLVH--ESSFSFPSGHSM 123
Query: 147 SLVLFYGLL-ILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGVSF-SSVLGGFCLG 204
+ Y ++ L+ HL K +++ + L+G++ + LGV F + VLGGF LG
Sbjct: 124 NAACVYPVIAYFLVKHLPFLSKHKKMVYIIAGVIAVLVGISRVYLGVHFVTDVLGGFSLG 183
Query: 205 AL 206
L
Sbjct: 184 LL 185
>gb|AAB81162.1| (AF006665) YokW [Bacillus subtilis]
Length = 203
Score = 60.8 bits (146), Expect = 1e-08
Identities = 49/182 (26%), Positives = 91/182 (49%), Gaps = 15/182 (8%)
Query: 34 FFILIAGLVFFDYAHLMDNAIFNFARSTPFNSSPILTLILQNIANLGSSQFVLPLSLLVG 93
FF+++A + + D AI +++ P L ++ I +LG+ F+LPL +++G
Sbjct: 10 FFLILAAAIHTNAVQSADEAI---SKAAVLIRQPWLNEVMTGITHLGAPSFLLPLIVIIG 66
Query: 94 VFLSLYRRN-------LVLGVWFVLSVILFEALLESLKHLFAYSIQWLSRSANFPNATAL 146
+ YR+ LV G +L+ +L E +E ++ FA + S +FP+ ++
Sbjct: 67 AGMFFYRKTWDGLLMLLVFGTDRLLNKVLKE-WIERVRPDFAPLVH--ESSFSFPSGHSM 123
Query: 147 SLVLFYGLL-ILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGVSF-SSVLGGFCLG 204
+ Y ++ L+ HL K +++ + L+G++ + LGV F + VLGGF LG
Sbjct: 124 NAACVYPVIAYFLVKHLPFLSKHKKMVYIIAGVIAVLVGISRVYLGVHFVTDVLGGFSLG 183
Query: 205 AL 206
L
Sbjct: 184 LL 185
>ref|NP_471000.1| (NC_003212) similar to unknown proteins [Listeria innocua]
emb|CAC96895.1| (AL596169) similar to unknown proteins [Listeria innocua]
Length = 217
Score = 47.8 bits (112), Expect = 9e-05
Identities = 46/202 (22%), Positives = 93/202 (45%), Gaps = 12/202 (5%)
Query: 22 KTLFLLGGV--FSAFFILIAGLVFFDYAHLMDNAIFNFARSTPFNSSPILTLILQNIANL 79
KT F++ G+ F +I + + H D + R + T ++ + ++
Sbjct: 3 KTPFIISGIALLGFVFFMIGVMTGAKWIHRFDQYWNSIIR---VGITDTKTTLISYLTDI 59
Query: 80 GSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESL-KHLFAY---SIQWLS 135
G + L+++V + L L ++ + +WF V++ AL+ S+ K++ + + +
Sbjct: 60 GGVATICILTVVVIIALVLMKK-VDTAIWFGGIVLVGGALIPSIIKNIVQRPRPTYKLIE 118
Query: 136 RSA-NFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGVSF 194
+ +FP+ A +FYG+L + ++H+ L+ + GL+ I + + LGV F
Sbjct: 119 QGGFSFPSGHATGSTVFYGMLAFFLILYVSHKWLRFAISILALGLVLFIMYSRVYLGVHF 178
Query: 195 -SSVLGGFCLGALGACFSIGIY 215
S V+ GF +G IG Y
Sbjct: 179 PSDVVAGFLIGNAVIYSGIGCY 200
>pir||S32217 hypothetical protein 2 - Bacillus megaterium
emb|CAA79986.1| (Z21972) ORF2 [Bacillus megaterium]
Length = 216
Score = 46.2 bits (108), Expect = 3e-04
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 6/156 (3%)
Query: 66 SPILTLILQNIANLGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESLKH 125
SP+LT I++ +GS+ ++ LSL++ FL ++ + V F ++ L +K
Sbjct: 49 SPLLTDIMKFFTYIGSTASLIILSLVILFFLYRILKHRLELVLFTAVMVGSPLLNLMVKL 108
Query: 126 LFAYSIQWLSR-----SANFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLI 180
F + L R +FP+ A++ YG+L L+ IT + + +L +I
Sbjct: 109 FFQRARPDLHRLIDIGGYSFPSGHAMNAFSLYGILTFLLWRHITARWARILLILFSMLMI 168
Query: 181 FLIGLALIVLGVSF-SSVLGGFCLGALGACFSIGIY 215
IG++ I LGV + S ++ G+ G SI +
Sbjct: 169 LSIGISRIYLGVHYPSDIIAGYLAGGCWIAISIWFF 204
>ref|NP_267161.1| (NC_002662) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
gb|AAK05103.1|AE006334_9 (AE006334) HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
Length = 218
Score = 45.4 bits (106), Expect = 4e-04
Identities = 46/195 (23%), Positives = 88/195 (44%), Gaps = 14/195 (7%)
Query: 22 KTLFLLGGVFSAFFILIAGLVFFDYAH---LMDNAIFNFARSTPFNSSPILTLILQNIAN 78
K ++ G + + F+++A V D+ H D I +A SS LT ++ N
Sbjct: 4 KIYYISGAITTLAFLILALFVKIDFTHGPFPFDRPIQTWAFH--LQSSSGLTYFFSHMTN 61
Query: 79 LGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESLKHLFAY---SIQWLS 135
+ + + +++L+ + L L + +WF +V+L AL +K + I L+
Sbjct: 62 IFGDKGGIIVAVLLALVLYLLFKQKEATIWFAATVVLSLALNTVIKAIIGRERPDIHRLA 121
Query: 136 RSAN-----FPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVL 190
AN FP+ ++ + +G + + + +++ K +L LI LI + I +
Sbjct: 122 AFANEAGKSFPSGHSIFATIIFGSIFFICLGKLKNRSSKILLGILCIILIALIMFSRIFV 181
Query: 191 GVSF-SSVLGGFCLG 204
GV + S +GGF G
Sbjct: 182 GVHYPSDTIGGFLEG 196
>gb|AAK25787.1|AF336821_1 (AF336821) putative phosphatase [Streptococcus pyogenes]
Length = 200
Score = 45.1 bits (105), Expect = 6e-04
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 16/193 (8%)
Query: 22 KTLFLLGGVFSAFFILIAGLVFF--DYAHLMDNAIFNFARSTPFNSSPILTLILQNIANL 79
+T FL+ F++I V F + L+DN I R N +LT + +
Sbjct: 5 QTHFLIASFALLIFVIIGYTVKFFPERLALLDNTIQAEIRG---NLPIVLTQFFRGVTVF 61
Query: 80 GSSQFVLPLSLLVGV-FLSLYRRNLVLGVWFVLSVILFEALLESLKHLFAY----SIQWL 134
G+ V+ LLV V L L+ + F+LS A L + LF +I+ L
Sbjct: 62 GN---VMTQVLLVIVSVLVLFFMKWKIEALFILSNGAIAAFLITTLKLFYQRPRPAIEHL 118
Query: 135 SRSA--NFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGV 192
+ +FP+ A+ +L +G L+++ + + L+ V LI LIGL+ I LGV
Sbjct: 119 VYAGGYSFPSGHAMGSMLIFGSLLIICYQRLHSKLLQFVTSMIFIILILLIGLSRIYLGV 178
Query: 193 SF-SSVLGGFCLG 204
+ S +L GF LG
Sbjct: 179 HYPSDILAGFVLG 191
>ref|NP_268696.1| (NC_002737) conserved hypothetical protein [Streptococcus pyogenes]
[Streptococcus pyogenes M1 GAS]
gb|AAK33417.1| (AE006500) conserved hypothetical protein [Streptococcus pyogenes
M1 GAS]
Length = 217
Score = 45.1 bits (105), Expect = 6e-04
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 16/193 (8%)
Query: 22 KTLFLLGGVFSAFFILIAGLVFF--DYAHLMDNAIFNFARSTPFNSSPILTLILQNIANL 79
+T FL+ F++I V F + L+DN I R N +LT + +
Sbjct: 6 QTHFLIASFALLIFVIIGYTVKFFPERLALLDNTIQAEIRG---NLPIVLTQFFRGVTVF 62
Query: 80 GSSQFVLPLSLLVGV-FLSLYRRNLVLGVWFVLSVILFEALLESLKHLFAY----SIQWL 134
G+ V+ LLV V L L+ + F+LS A L + LF +I+ L
Sbjct: 63 GN---VMTQVLLVIVSVLVLFFMKWKIEALFILSNGAIAAFLITTLKLFYQRPRPAIEHL 119
Query: 135 SRSA--NFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGV 192
+ +FP+ A+ +L +G L+++ + + L+ V LI LIGL+ I LGV
Sbjct: 120 VYAGGYSFPSGHAMGSMLIFGSLLIICYQRLHSKLLQFVTSMIFIILILLIGLSRIYLGV 179
Query: 193 SF-SSVLGGFCLG 204
+ S +L GF LG
Sbjct: 180 HYPSDILAGFVLG 192
>ref|NP_465148.1| (NC_003210) similar to unknown proteins [Listeria monocytogenes
EGD-e]
emb|CAC99701.1| (AL591980) similar to unknown proteins [Listeria monocytogenes]
Length = 217
Score = 45.1 bits (105), Expect = 6e-04
Identities = 33/159 (20%), Positives = 77/159 (47%), Gaps = 7/159 (4%)
Query: 70 TLILQNIANLGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESL-KHLFA 128
T ++ + ++G + L+ ++ + + ++ R + +WF V++ AL+ S+ K++
Sbjct: 50 TTVISYLTDIGGVATICILTAII-IIVFVFMRKVDTAIWFGSIVLIGGALIPSIIKNIVQ 108
Query: 129 Y---SIQWLSRSA-NFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIG 184
+ + + + +FP+ + +FYG+L L+ ++ L+ + G++ +
Sbjct: 109 RPRPTYKLIEQGGFSFPSGHSTGSTVFYGMLAFLLILYVSRSWLRFTIGILALGIVIFVM 168
Query: 185 LALIVLGVSF-SSVLGGFCLGALGACFSIGIYLSVFQKI 222
+ + LGV F S V+ GF +G IG Y +K+
Sbjct: 169 YSRVYLGVHFPSDVVAGFLIGNAALFSGIGCYFIWNEKL 207
>ref|NP_606668.1| (NC_003485) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
gb|AAL97167.1| (AE009983) conserved hypothetical protein [Streptococcus pyogenes
MGAS8232]
Length = 217
Score = 44.3 bits (103), Expect = 0.001
Identities = 51/192 (26%), Positives = 87/192 (44%), Gaps = 14/192 (7%)
Query: 22 KTLFLLGGVFSAFFILIAGLVFF--DYAHLMDNAIFNFARSTPFNSSPILTLILQNIANL 79
+T FL+ F++I V F + L+DN I R N +LT + +
Sbjct: 6 QTHFLIASFALLIFVIIGYTVKFFPERLALLDNTIQAEIRG---NLPIVLTQFFRGVTVF 62
Query: 80 GSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESLKHLFAY----SIQWLS 135
G+ + + L++ L L+ + F+LS A L + LF +I+ L
Sbjct: 63 GN--VMTQILLVIVSVLVLFFMKWKIEALFILSNGAIAAFLITTLKLFYQRPRPAIEHLV 120
Query: 136 RSA--NFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGVS 193
+ +FP+ A+ +L +G L+++ + + L+ V LI +IGL+ I LGV
Sbjct: 121 YAGGYSFPSGHAMGSMLIFGSLLIICYQRLHSKLLQFVTSMIFIILILVIGLSRIYLGVH 180
Query: 194 F-SSVLGGFCLG 204
+ S +L GF LG
Sbjct: 181 YPSDILAGFVLG 192
>gb|AAC45388.1| (U81488) putative phosphatidic acid phosphatase [Lactococcus lactis
subsp. cremoris]
Length = 218
Score = 43.9 bits (102), Expect = 0.001
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 14/195 (7%)
Query: 22 KTLFLLGGVFSAFFILIAGLVFFDYAHL---MDNAIFNFARSTPFNSSPILTLILQNIAN 78
K ++LG + + F+++ LV Y H D+ I N+A SS LT ++ N
Sbjct: 4 KNYYILGTLTTLAFLILTVLVKIYYTHAPLPFDSPIQNWAFH--LQSSSGLTFFFSHMTN 61
Query: 79 LGSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVILFEALLESLKHLFAYSIQWLSRSA 138
+ + + +++L+ + L L + +WF VI + ++K + + R A
Sbjct: 62 IFGDKGGIIVAVLLALVLYLIFKEKKATIWFATMVISSLLINTAIKMIIGRDRPEIHRLA 121
Query: 139 NFPNATALSLVLFYGLLILLI---PHLITHQTLKNVLFYSLFGLIFLIGLALIV-----L 190
F N S + + +I I + LKN L G++ LI +A ++ +
Sbjct: 122 AFANEAGKSFPSGHSIFATIIFGSVFFICLRKLKNNLAKIALGILCLILIATVMFSRIFV 181
Query: 191 GVSF-SSVLGGFCLG 204
GV + S +GGF G
Sbjct: 182 GVHYPSDTIGGFLEG 196
>gb|AAK25788.1|AF336822_1 (AF336822) putative phosphatase [Streptococcus pyogenes]
gb|AAK25789.1|AF336823_1 (AF336823) putative phosphatase [Streptococcus pyogenes]
gb|AAK25790.1|AF336824_1 (AF336824) putative phosphatase [Streptococcus pyogenes]
Length = 201
Score = 43.9 bits (102), Expect = 0.001
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 16/193 (8%)
Query: 22 KTLFLLGGVFSAFFILIAGLVFF--DYAHLMDNAIFNFARSTPFNSSPILTLILQNIANL 79
+T FL+ F++I V F + L+DN I R N +LT + +
Sbjct: 5 QTHFLIASFALLIFVIIGYTVKFFPERLALLDNTIQAEIRG---NLPIVLTQFFRGVTVF 61
Query: 80 GSSQFVLPLSLLVGV-FLSLYRRNLVLGVWFVLSVILFEALLESLKHLFAY----SIQWL 134
G+ V+ LLV V L L+ + F+LS A L + LF +I+ L
Sbjct: 62 GN---VMTQVLLVIVSVLVLFFMKWKIEALFILSNGAIAAFLITTLKLFYQRPRPAIEHL 118
Query: 135 SRSA--NFPNATALSLVLFYGLLILLIPHLITHQTLKNVLFYSLFGLIFLIGLALIVLGV 192
+ +FP+ A+ +L +G L+++ + + L+ V LI +IGL+ I LGV
Sbjct: 119 VYAGGYSFPSGHAMGSMLIFGSLLIICYQRLHSKLLQFVTSMIFIILILVIGLSRIYLGV 178
Query: 193 SF-SSVLGGFCLG 204
+ S +L GF LG
Sbjct: 179 HYPSDILAGFVLG 191
>gb|AAL10144.1| (AF407531) NADH dehydrogenase subunit 2 [Varanus storri]
Length = 345
Score = 41.2 bits (95), Expect = 0.008
Identities = 57/200 (28%), Positives = 94/200 (46%), Gaps = 30/200 (15%)
Query: 16 FFLLPAKT--LFLLGGVFSAFFILIAGLVFFDYAHLMDNA---IFNFARSTPFNSSPI-- 68
+FL+ A + LFLL G+ SA+ +D +HL++N +F A +T +PI
Sbjct: 59 YFLIQATSSALFLLSGITSAYLYGT-----WDISHLLNNPSKILFTTALATKLGLAPIHF 113
Query: 69 -LTLILQNIANL-----GSSQFVLPLSLLVGVFLSLYRRNLVLGVWFVLSVI--LFEALL 120
L +LQ + L + Q + P++LL+ + L + L + + ++I L
Sbjct: 114 WLPEVLQGVPILTALIIATWQKMAPMALLITTW-DLIPTPITLTMGLLSTIIGGLGGLNQ 172
Query: 121 ESLKHLFAYS----IQWLSRSANF-PNATALSLVLFYGLL--ILLIPHLITHQTLKNVLF 173
L+ + AYS + W+ PN T L+L L+ L +L HL T +TL+N +
Sbjct: 173 TQLRKMMAYSSIAHLGWMIIIITIAPNLTFLNLTLYMTLTSSAMLTMHLTTSKTLQNAMH 232
Query: 174 YSLFGLIF--LIGLALIVLG 191
S I L L+L+ LG
Sbjct: 233 ISSHSPIITSLFLLSLLSLG 252
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.333 0.148 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,003,676
Number of Sequences: 1026957
Number of extensions: 5094418
Number of successful extensions: 26246
Number of sequences better than 1.0e-02: 18
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 26224
Number of HSP's gapped (non-prelim): 18
length of query: 222
length of database: 324,149,939
effective HSP length: 117
effective length of query: 105
effective length of database: 203,995,970
effective search space: 21419576850
effective search space used: 21419576850
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 95 (41.2 bits)