BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644668|ref|NP_206837.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(97 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206837.1| (NC_000915) conserved hypothetical protein... 192 6e-49
ref|NP_222753.1| (NC_000921) putative [Helicobacter pylori ... 185 8e-47
sp|O34247|Y102_WOLSU Hypothetical 11.0 kDa protein (ORF102)... 104 2e-22
sp|Q9PM34|YG42_CAMJE Hypothetical protein Cj1642 90 6e-18
ref|NP_282770.1| (NC_002163) hypothetical protein Cj1642 [C... 90 6e-18
ref|NP_360974.1| (NC_003103) unknown [Rickettsia conorii] >... 54 5e-07
ref|NP_221214.1| (NC_000963) unknown [Rickettsia prowazekii... 52 1e-06
ref|NP_250224.1| (NC_002516) conserved hypothetical protein... 49 1e-05
ref|NP_406599.1| (NC_003143) conserved hypothetical protein... 48 3e-05
ref|NP_286212.1| (NC_002655) orf, hypothetical protein [Esc... 47 3e-05
ref|NP_438603.1| (NC_000907) conserved hypothetical protein... 47 6e-05
sp|Q9KT50|YA55_VIBCH Hypothetical protein VC1055 47 6e-05
sp|P44711|YBAB_HAEIN Protein HI0442 47 6e-05
ref|NP_230700.1| (NC_002505) conserved hypothetical protein... 47 6e-05
ref|NP_387901.1| (NC_000964) similar to hypothetical protei... 45 2e-04
ref|NP_299095.1| (NC_002488) conserved hypothetical protein... 44 3e-04
ref|NP_653974.1| (NC_003995) DUF149, Uncharacterized BCR, Y... 44 4e-04
ref|NP_245142.1| (NC_002663) unknown [Pasteurella multocida... 44 4e-04
ref|NP_636378.1| (NC_003902) conserved hypothetical protein... 44 5e-04
ref|NP_641447.1| (NC_003919) conserved hypothetical protein... 44 5e-04
ref|NP_371003.1| (NC_002758) conserved hypothetical protein... 44 5e-04
ref|NP_240901.1| (NC_002570) BH0035~unknown conserved prote... 43 6e-04
sp|Q9ABF9|Y268_CAUCR Hypothetical protein CC0268 42 0.001
ref|NP_604167.1| (NC_003454) Hypothetical cytosolic protein... 42 0.001
ref|NP_540826.1| (NC_003317) Hypothetical Transcriptional R... 41 0.002
ref|NP_106159.1| (NC_002678) hypothetical protein [Mesorhiz... 40 0.005
ref|NP_240293.1| (NC_002528) hypothetical protein [Buchnera... 40 0.005
ref|NP_621749.1| (NC_003869) conserved hypothetical protein... 40 0.007
ref|NP_661699.1| (NC_002932) conserved hypothetical protein... 40 0.007
ref|NP_660799.1| (NC_004061) hypothetical 12.0 kD protein i... 39 0.009
ref|NP_419087.1| (NC_002696) conserved hypothetical protein... 39 0.009
ref|NP_466225.1| (NC_003210) highly similar to B. subtilis ... 39 0.009
>ref|NP_206837.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O24876|Y035_HELPY Hypothetical protein HP0035
pir||C64524 conserved hypothetical protein HP0035 - Helicobacter pylori
(strain 26695)
gb|AAD07104.1| (AE000525) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 97
Score = 192 bits (488), Expect = 6e-49
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MDFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLED 60
MDFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLED
Sbjct: 1 MDFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLED 60
Query: 61 KEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL 97
KEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL
Sbjct: 61 KEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL 97
>ref|NP_222753.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZN29|Y035_HELPJ Hypothetical protein JHP0031
pir||E71983 hypothetical protein jhp0031 - Helicobacter pylori (strain J99)
gb|AAD05615.1| (AE001442) putative [Helicobacter pylori J99]
Length = 100
Score = 185 bits (470), Expect = 8e-47
Identities = 96/100 (96%), Positives = 97/100 (97%), Gaps = 3/100 (3%)
Query: 1 MDFSQLGGL---LDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSL 57
MDFSQLGGL LDG+KKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSL
Sbjct: 1 MDFSQLGGLSGLLDGVKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSL 60
Query: 58 LEDKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL 97
LEDKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL
Sbjct: 61 LEDKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL 100
>sp|O34247|Y102_WOLSU Hypothetical 11.0 kDa protein (ORF102)
emb|CAA05823.1| (AJ003049) hypothetical protein; similar to HP0035 from
Helicobacter pylori [Wolinella succinogenes]
Length = 102
Score = 104 bits (259), Expect = 2e-22
Identities = 51/94 (54%), Positives = 72/94 (76%)
Query: 2 DFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDK 61
D S+L +L + + ++EEK+ +T T+KSGGG+VSVS +G GEL+D+ IDDSLLEDK
Sbjct: 3 DPSKLSEMLTQFQDKAKEMEEKSHNTSFTAKSGGGLVSVSMSGAGELLDVSIDDSLLEDK 62
Query: 62 EAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFA 95
E++QI L+SA+ND YK+VEEN+K++ MLG A
Sbjct: 63 ESLQILLISAINDVYKSVEENKKSMTLGMLGGMA 96
>sp|Q9PM34|YG42_CAMJE Hypothetical protein Cj1642
Length = 99
Score = 89.7 bits (221), Expect = 6e-18
Identities = 44/94 (46%), Positives = 69/94 (72%)
Query: 1 MDFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLED 60
MDFS++G LL+ ++++ +E + + ++KSG G+V VS NG GE++D+ IDDSLLED
Sbjct: 1 MDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKVSANGKGEIIDVSIDDSLLED 60
Query: 61 KEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNF 94
KE++QI L+SA+ND V +NR ++A ++LG F
Sbjct: 61 KESLQILLISAINDVLAMVAQNRSSMANDVLGGF 94
>ref|NP_282770.1| (NC_002163) hypothetical protein Cj1642 [Campylobacter jejuni]
pir||H81260 hypothetical protein Cj1642 [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73630.1| (AL139079) hypothetical protein Cj1642 [Campylobacter jejuni]
Length = 103
Score = 89.7 bits (221), Expect = 6e-18
Identities = 44/94 (46%), Positives = 69/94 (72%)
Query: 1 MDFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLED 60
MDFS++G LL+ ++++ +E + + ++KSG G+V VS NG GE++D+ IDDSLLED
Sbjct: 5 MDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKVSANGKGEIIDVSIDDSLLED 64
Query: 61 KEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNF 94
KE++QI L+SA+ND V +NR ++A ++LG F
Sbjct: 65 KESLQILLISAINDVLAMVAQNRSSMANDVLGGF 98
>ref|NP_360974.1| (NC_003103) unknown [Rickettsia conorii]
sp|Q92FZ0|YD37_RICCN Hypothetical protein RC1337
gb|AAL03875.1| (AE008680) unknown [Rickettsia conorii]
Length = 107
Score = 53.5 bits (127), Expect = 5e-07
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 1 MDFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL-- 58
++F+Q M+K+ + +E+ + +T K+GGG+V V G GE+ + ID+SLL
Sbjct: 2 VNFNQFLKQAQSMQKKMQEAQEQMANARYTGKAGGGLVEVIATGKGEVEKISIDESLLKA 61
Query: 59 EDKEAMQIYLMSALNDGYKAVEENRKN 85
E+KE ++ + A ND + +E+ +N
Sbjct: 62 EEKEMLEDLIKVAFNDAQQKCDEDSQN 88
>ref|NP_221214.1| (NC_000963) unknown [Rickettsia prowazekii]
sp|Q9ZCA0|Y866_RICPR Hypothetical protein RP866
pir||B71649 hypothetical protein RP866 - Rickettsia prowazekii
emb|CAA15290.1| (AJ235273) unknown [Rickettsia prowazekii]
Length = 107
Score = 52.0 bits (123), Expect = 1e-06
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 1 MDFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL-- 58
++F+Q M+K+ + +E+ +T +T K+GG +V + G GE+ + ID+SLL
Sbjct: 2 VNFNQFLKQAQSMQKKMQEAQEQMANTRYTGKAGGMLVEIIITGKGEVEKISIDESLLKT 61
Query: 59 EDKEAMQIYLMSALNDGYKAVEENRKN 85
E+KE ++ + A ND + +E+ +N
Sbjct: 62 EEKEMLEDLIKVAFNDAKQKCDEDSQN 88
>ref|NP_250224.1| (NC_002516) conserved hypothetical protein [Pseudomonas
aeruginosa]
sp|Q9I3I0|YF33_PSEAE Hypothetical protein PA1533
pir||B83455 conserved hypothetical protein PA1533 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG04922.1|AE004581_9 (AE004581) conserved hypothetical protein [Pseudomonas
aeruginosa]
Length = 108
Score = 48.5 bits (114), Expect = 1e-05
Identities = 23/73 (31%), Positives = 47/73 (63%), Gaps = 1/73 (1%)
Query: 13 MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL-EDKEAMQIYLMSA 71
M+++ +++E+ + T +SG G+VSV G ++ + +DDSL+ EDKE ++ + +A
Sbjct: 16 MQEKMQKMQEELANAEVTGQSGAGLVSVVMTGRHDVKRVSLDDSLMQEDKEILEDLIAAA 75
Query: 72 LNDGYKAVEENRK 84
+ND + +E+N +
Sbjct: 76 VNDAVRKIEQNNQ 88
>ref|NP_406599.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
sp|Q8ZC96|YV21_YERPE Hypothetical protein YPO3121
emb|CAC92357.1| (AJ414155) conserved hypothetical protein [Yersinia pestis]
Length = 110
Score = 47.8 bits (112), Expect = 3e-05
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 13 MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL--EDKEAMQIYLMS 70
M+++ Q++E+ T +SG G+V V+ NG ++ID SLL +DKE ++ + +
Sbjct: 17 MQEKMQQMQEEVAKLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLVEDDKEMLEDLIAA 76
Query: 71 ALNDGYKAVEENRK 84
ALND + ++E +K
Sbjct: 77 ALNDAARRIDETQK 90
>ref|NP_286212.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_308551.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_415004.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
ref|NP_455081.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
ref|NP_459480.1| (NC_003197) putative cytoplasmic protein [Salmonella typhimurium
LT2]
sp|P17577|YBAB_ECOLI Hypothetical protein ybaB
pir||QQECZG ybaB protein - Escherichia coli
gb|AAA23458.1| (M38777) orf12 ORF [Escherichia coli]
gb|AAC73573.1| (AE000153) orf, hypothetical protein [Escherichia coli K12]
gb|AAG54820.1|AE005226_3 (AE005226) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB33947.1| (AP002551) hypothetical protein [Escherichia coli O157:H7]
gb|AAL19439.1| (AE008718) putative cytoplasmic protein [Salmonella typhimurium
LT2]
emb|CAD04970.1| (AL627267) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 109
Score = 47.4 bits (111), Expect = 3e-05
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 13 MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLE-DKEAMQIYLMSA 71
M+++ +++E+ T +SG G+V V+ NG ++ID SLLE DKE ++ + +A
Sbjct: 17 MQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAA 76
Query: 72 LNDGYKAVEENRK 84
ND + +EE +K
Sbjct: 77 FNDAARRIEETQK 89
>ref|NP_438603.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
pir||G64152 hypothetical protein HI0442 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC22101.1| (U32727) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 121
Score = 46.6 bits (109), Expect = 6e-05
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 6 LGGLL---DGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLE-DK 61
LGGL+ M+++ +++E+ T +SG G+V ++ NG + ID SL+E DK
Sbjct: 19 LGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDK 78
Query: 62 EAMQIYLMSALNDGYKAVEENRK 84
E ++ + +A ND + EE +K
Sbjct: 79 EMLEDLIAAAFNDAVRRAEELQK 101
>sp|Q9KT50|YA55_VIBCH Hypothetical protein VC1055
Length = 109
Score = 46.6 bits (109), Expect = 6e-05
Identities = 25/81 (30%), Positives = 47/81 (57%), Gaps = 1/81 (1%)
Query: 13 MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLE-DKEAMQIYLMSA 71
M++ +L+E+ + T +SG G+V V+ G + + ID+SL+E DKE ++ + +A
Sbjct: 17 MQERMQKLQEEIANMEVTGESGAGLVKVTVTGSHSVRRVNIDESLMEDDKEMLEDLIAAA 76
Query: 72 LNDGYKAVEENRKNLAFNMLG 92
ND + +EE +K ++ G
Sbjct: 77 FNDAARRIEETQKEKMASITG 97
>sp|P44711|YBAB_HAEIN Protein HI0442
Length = 109
Score = 46.6 bits (109), Expect = 6e-05
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 6 LGGLL---DGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLE-DK 61
LGGL+ M+++ +++E+ T +SG G+V ++ NG + ID SL+E DK
Sbjct: 7 LGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDK 66
Query: 62 EAMQIYLMSALNDGYKAVEENRK 84
E ++ + +A ND + EE +K
Sbjct: 67 EMLEDLIAAAFNDAVRRAEELQK 89
>ref|NP_230700.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||A82247 conserved hypothetical protein VC1055 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF94214.1| (AE004187) conserved hypothetical protein [Vibrio cholerae]
Length = 120
Score = 46.6 bits (109), Expect = 6e-05
Identities = 25/81 (30%), Positives = 47/81 (57%), Gaps = 1/81 (1%)
Query: 13 MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLE-DKEAMQIYLMSA 71
M++ +L+E+ + T +SG G+V V+ G + + ID+SL+E DKE ++ + +A
Sbjct: 28 MQERMQKLQEEIANMEVTGESGAGLVKVTVTGSHSVRRVNIDESLMEDDKEMLEDLIAAA 87
Query: 72 LNDGYKAVEENRKNLAFNMLG 92
ND + +EE +K ++ G
Sbjct: 88 FNDAARRIEETQKEKMASITG 108
>ref|NP_387901.1| (NC_000964) similar to hypothetical proteins [Bacillus subtilis]
sp|P24281|YAAK_BACSU Hypothetical protein yaaK
pir||S13787 conserved hypothetical protein yaaK - Bacillus subtilis
emb|CAA34878.1| (X17014) ORF107 [Bacillus subtilis]
dbj|BAA05256.1| (D26185) unknown [Bacillus subtilis]
emb|CAB11796.1| (Z99104) similar to hypothetical proteins [Bacillus subtilis]
Length = 107
Score = 45.1 bits (105), Expect = 2e-04
Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 13 MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL--EDKEAMQIYLMS 70
M+K+ ++ +E+ + + +GGGMV+V NG E++D+ I + ++ ED + +Q +++
Sbjct: 18 MQKDMAKAQEELAEKVVEGTAGGGMVTVKANGQKEILDVIIKEEVVDPEDIDMLQDLVLA 77
Query: 71 ALNDGYKAVEENRKNLAFNMLGNFAK 96
A N+ K V+E + +G F K
Sbjct: 78 ATNEALKKVDE----ITNETMGQFTK 99
>ref|NP_299095.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
sp|Q9PCH2|YI08_XYLFA Hypothetical protein Xf1808
pir||C82635 conserved hypothetical protein XF1808 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF84615.1|AE004002_5 (AE004002) conserved hypothetical protein [Xylella fastidiosa
9a5c]
Length = 107
Score = 44.3 bits (103), Expect = 3e-04
Identities = 27/92 (29%), Positives = 49/92 (52%), Gaps = 1/92 (1%)
Query: 2 DFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDK 61
+ +QL M++ + +E+ T +GGGMVSV +G E ++ID S+L D+
Sbjct: 5 NIAQLMQQAQKMQENLQRAQEELAKLEVTGSAGGGMVSVILSGTKECRKVRIDPSILNDQ 64
Query: 62 EAMQIYLMSALNDGYKAVE-ENRKNLAFNMLG 92
E ++ + +A ND V+ E+++ + LG
Sbjct: 65 EMIEDLIAAAFNDASNKVDTESKERMGSATLG 96
>ref|NP_653974.1| (NC_003995) DUF149, Uncharacterized BCR, YbaB family COG0718
[Bacillus anthracis A2012] [Bacillus anthracis str.
A2012]
Length = 109
Score = 43.9 bits (102), Expect = 4e-04
Identities = 24/86 (27%), Positives = 51/86 (58%), Gaps = 6/86 (6%)
Query: 13 MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL--EDKEAMQIYLMS 70
M+KE ++ +E+ + +GGGM++V NG +++++++ + ++ ED E +Q +++
Sbjct: 19 MQKEMAKAQEELGEKTVEGTAGGGMITVIANGHKQILEVKVKEEVVDPEDIEMLQDLVLA 78
Query: 71 ALNDGYKAVEENRKNLAFNMLGNFAK 96
A ND K +E L+ + +G F K
Sbjct: 79 ATNDALKKADE----LSNSTMGKFTK 100
>ref|NP_245142.1| (NC_002663) unknown [Pasteurella multocida]
sp|P57825|Y205_PASMU Hypothetical protein PM0205
gb|AAK02289.1| (AE006055) unknown [Pasteurella multocida]
Length = 109
Score = 43.9 bits (102), Expect = 4e-04
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 5 QLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLE-DKEA 63
Q+ + M++E +QLE T +SG G+V ++ NG ++ID SL+E DK+
Sbjct: 16 QMQDRMQKMQEEIAQLEV-------TGESGAGLVKITINGAHNCRRVEIDPSLMEDDKDM 68
Query: 64 MQIYLMSALNDGYKAVEENRK 84
++ + +A ND + EE +K
Sbjct: 69 LEDLIAAAFNDAVRRAEELQK 89
>ref|NP_636378.1| (NC_003902) conserved hypothetical protein [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gb|AAM40302.1| (AE012197) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 106
Score = 43.5 bits (101), Expect = 5e-04
Identities = 24/83 (28%), Positives = 42/83 (49%)
Query: 2 DFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDK 61
+ +QL M++ + +E+ T +GGGMVSV+ G E ++ID S+L D+
Sbjct: 4 NIAQLMQQAQKMQENLQRAQEELAKLEVTGSAGGGMVSVTLTGAKECRKVRIDPSILSDQ 63
Query: 62 EAMQIYLMSALNDGYKAVEENRK 84
E + + +A ND ++ K
Sbjct: 64 EMAEDLIAAAFNDASNKIDAESK 86
>ref|NP_641447.1| (NC_003919) conserved hypothetical protein [Xanthomonas
axonopodis pv. citri str. 306]
gb|AAM35983.1| (AE011739) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 106
Score = 43.5 bits (101), Expect = 5e-04
Identities = 24/84 (28%), Positives = 43/84 (50%)
Query: 2 DFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDK 61
+ +QL M++ + +E+ T +GGGMVSV+ G E ++ID S+L D+
Sbjct: 4 NIAQLMQQAQKMQENLQRAQEELAKLEVTGTAGGGMVSVTLTGAKECRKVRIDPSILSDQ 63
Query: 62 EAMQIYLMSALNDGYKAVEENRKN 85
E + + +A ND ++ K+
Sbjct: 64 EMAEDLIAAAFNDASNKIDAESKD 87
>ref|NP_371003.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_373689.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
ref|NP_645251.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
sp|Q99WC4|Y479_STAAM Hypothetical protein SAV0479
dbj|BAB41667.1| (AP003130) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB56641.1| (AP003359) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
dbj|BAB94299.1| (AP004823) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 105
Score = 43.5 bits (101), Expect = 5e-04
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 2 DFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL--E 59
+ Q+ + M+K+ +Q +EK K+ +GGGMV+V+ G E+VD++I + + +
Sbjct: 6 NMQQMMKQMQKMQKKMAQEQEKLKEERIVGTAGGGMVAVTVTGHKEVVDVEIKEEAVDPD 65
Query: 60 DKEAMQIYLMSALNDGYKAVEE 81
D E +Q +++A N+ +E
Sbjct: 66 DIEMLQDLVLAATNEAMNKADE 87
>ref|NP_240901.1| (NC_002570) BH0035~unknown conserved protein [Bacillus
halodurans]
sp|Q9JWQ5|Y035_BACHD Hypothetical protein BH0035
dbj|BAA90837.1| (AB031210) YaaK [Bacillus halodurans]
dbj|BAB03754.1| (AP001507) BH0035~unknown conserved protein [Bacillus halodurans]
Length = 103
Score = 43.1 bits (100), Expect = 6e-04
Identities = 26/97 (26%), Positives = 54/97 (54%), Gaps = 6/97 (6%)
Query: 2 DFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL--E 59
+ Q+ + M+K+ + +E+ K+ + +GGGMV+V +G ++D++I + ++ +
Sbjct: 3 NMGQMMKQMQKMQKQMMKAQEELKEKTVEATAGGGMVTVVASGDKRILDVRISEDVVDPD 62
Query: 60 DKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAK 96
D E +Q +++A N+ K V+E L +G F K
Sbjct: 63 DVEMLQDLILAATNEALKKVDE----LVEQDMGKFTK 95
>sp|Q9ABF9|Y268_CAUCR Hypothetical protein CC0268
Length = 109
Score = 42.4 bits (98), Expect = 0.001
Identities = 28/97 (28%), Positives = 53/97 (53%), Gaps = 5/97 (5%)
Query: 6 LGGLL---DGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLE--D 60
LGGL+ M+++ + + + +T SGGGMV+V+ G GELV + +D+SL++ +
Sbjct: 4 LGGLMKQAQAMQQKLADAQARLAETTVDGTSGGGMVTVTLMGNGELVRVLMDESLVQPGE 63
Query: 61 KEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNFAKL 97
E + +++A D K ++ + + + G A L
Sbjct: 64 GEVIADLIIAAHADAKKKLDAKQAQMMQDAAGPMAGL 100
>ref|NP_604167.1| (NC_003454) Hypothetical cytosolic protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gb|AAL95466.1| (AE010632) Hypothetical cytosolic protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 88
Score = 42.0 bits (97), Expect = 0.001
Identities = 22/67 (32%), Positives = 40/67 (58%), Gaps = 4/67 (5%)
Query: 19 QLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLE----DKEAMQIYLMSALND 74
+++E+ K +S GGG VSV NG EL+++++ D +L+ DKE ++ +++A+ D
Sbjct: 3 EVQEQLKSKEVSSSVGGGAVSVKVNGQKELMEVKLSDEILKDAANDKEMLEDLILTAVKD 62
Query: 75 GYKAVEE 81
EE
Sbjct: 63 AMAKAEE 69
>ref|NP_540826.1| (NC_003317) Hypothetical Transcriptional Regulatory Protein
[Brucella melitensis]
sp|Q8YEG9|YJ09_BRUME Hypothetical protein BMEI1909
gb|AAL53090.1| (AE009624) Hypothetical Transcriptional Regulatory Protein
[Brucella melitensis]
Length = 107
Score = 41.2 bits (95), Expect = 0.002
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 9/78 (11%)
Query: 12 GMKKEFSQLEEKNK---DTIHT----SKSGGGMVSVSFNGLGELVDLQIDDSLLEDKEA- 63
GM K+ +L+ K K D I T + SGGG+V+V+ +G G L L+ID SL+++ E
Sbjct: 6 GMMKQAKELQAKMKAMQDEIATMEASASSGGGLVTVTLSGKGTLSALKIDPSLMKEDEVE 65
Query: 64 -MQIYLMSALNDGYKAVE 80
++ +++A ND +E
Sbjct: 66 ILEDLIIAAHNDAKAKLE 83
>ref|NP_106159.1| (NC_002678) hypothetical protein [Mesorhizobium loti]
sp|Q98BM7|YJA4_RHILO Hypothetical protein mlr5504
dbj|BAB51945.1| (AP003006) hypothetical protein [Mesorhizobium loti]
Length = 107
Score = 40.0 bits (92), Expect = 0.005
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 2 DFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDK 61
D L G M+ +F ++++ ++GGG+VSV +G E+ L+ID SL ++
Sbjct: 3 DLLGLMGKAKEMQAKFQAMQDEIATVESVGQAGGGLVSVILSGKFEMKSLKIDPSLFKED 62
Query: 62 EA--MQIYLMSALNDGYKAVEE 81
E ++ +++A ND VE+
Sbjct: 63 EVEILEDLILAAHNDAKAKVEQ 84
>ref|NP_240293.1| (NC_002528) hypothetical protein [Buchnera sp. APS]
sp|P57554|Y482_BUCAI Hypothetical protein BU482
dbj|BAB13179.1| (AP001119) hypothetical protein [Buchnera sp. APS]
Length = 109
Score = 40.0 bits (92), Expect = 0.005
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 13 MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL-EDKEAMQIYLMSA 71
M+++ ++++E+ T ++G G+V V+ NG +++D SLL +DK+ ++ +A
Sbjct: 17 MQEKMAKIQEEIAQMEVTGEAGAGLVKVTINGAHNCRRVEVDPSLLQDDKDMLEDLAAAA 76
Query: 72 LNDGYKAVEENRK 84
ND + + E +K
Sbjct: 77 FNDATRRISEVQK 89
>ref|NP_621749.1| (NC_003869) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
gb|AAM23353.1| (AE012979) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
Length = 111
Score = 39.7 bits (91), Expect = 0.007
Identities = 23/84 (27%), Positives = 43/84 (50%), Gaps = 2/84 (2%)
Query: 13 MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL--EDKEAMQIYLMS 70
M++E +++E+ SGGGMV NG ELV + I+ ++ +D E ++ +++
Sbjct: 22 MQEEIKKMQEELMQKTVEGTSGGGMVKAVANGRKELVSININPEVVDKDDVETLEDLVLA 81
Query: 71 ALNDGYKAVEENRKNLAFNMLGNF 94
A+N + EE + + G F
Sbjct: 82 AVNQALRNAEEMIASEMAKITGGF 105
>ref|NP_661699.1| (NC_002932) conserved hypothetical protein [Chlorobium tepidum
TLS]
gb|AAM72041.1| (AE012848) conserved hypothetical protein [Chlorobium tepidum
TLS]
Length = 121
Score = 39.7 bits (91), Expect = 0.007
Identities = 17/63 (26%), Positives = 38/63 (59%)
Query: 16 EFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLEDKEAMQIYLMSALNDG 75
+ L+++ + + ++GGGMV NG +L++L ID +++D + +Q +++A+N
Sbjct: 29 KMQDLQKQLEKLVSEGEAGGGMVRAKVNGRQKLLELTIDPEIMDDVDMVQDLVVAAVNKA 88
Query: 76 YKA 78
+A
Sbjct: 89 LEA 91
>ref|NP_660799.1| (NC_004061) hypothetical 12.0 kD protein in dnaX-recR [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gb|AAM68010.1| (AE014123) hypothetical 12.0 kD protein in dnaX-recR [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 109
Score = 39.3 bits (90), Expect = 0.009
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 13 MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL-EDKEAMQIYLMSA 71
M+++ ++++E+ T ++G G+V V+ NG +++D SLL +DK+ ++ +A
Sbjct: 17 MQEKMAKVQEEIAKMEVTGEAGAGLVKVTINGAHNCRRVEVDPSLLKDDKDMLEDLAAAA 76
Query: 72 LNDGYKAVEENRK 84
ND + + E +K
Sbjct: 77 FNDATRRISEVQK 89
>ref|NP_419087.1| (NC_002696) conserved hypothetical protein [Caulobacter
crescentus CB15]
gb|AAK22255.1| (AE005700) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 102
Score = 39.3 bits (90), Expect = 0.009
Identities = 24/87 (27%), Positives = 48/87 (54%), Gaps = 2/87 (2%)
Query: 13 MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLLE--DKEAMQIYLMS 70
M+++ + + + +T SGGGMV+V+ G GELV + +D+SL++ + E + +++
Sbjct: 7 MQQKLADAQARLAETTVDGTSGGGMVTVTLMGNGELVRVLMDESLVQPGEGEVIADLIIA 66
Query: 71 ALNDGYKAVEENRKNLAFNMLGNFAKL 97
A D K ++ + + + G A L
Sbjct: 67 AHADAKKKLDAKQAQMMQDAAGPMAGL 93
>ref|NP_466225.1| (NC_003210) highly similar to B. subtilis YaaK protein [Listeria
monocytogenes EGD-e]
sp|Q8Y3X6|YR03_LISMO Hypothetical protein Lmo2703
emb|CAD00916.1| (AL591984) highly similar to B. subtilis YaaK protein [Listeria
monocytogenes]
Length = 105
Score = 39.3 bits (90), Expect = 0.009
Identities = 22/71 (30%), Positives = 41/71 (56%), Gaps = 2/71 (2%)
Query: 13 MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL--EDKEAMQIYLMS 70
M+KE ++ + + T +GGGMV+V G + D+ I++ ++ ED E +Q +++
Sbjct: 17 MQKEMAKAQADLEAQEFTGTAGGGMVTVKATGKRVITDVVINEEVVDPEDIEMLQDLVLA 76
Query: 71 ALNDGYKAVEE 81
A ND K +E+
Sbjct: 77 ATNDVLKQIED 87
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.313 0.134 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,945,206
Number of Sequences: 1026957
Number of extensions: 2078132
Number of successful extensions: 4768
Number of sequences better than 1.0e-02: 32
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4746
Number of HSP's gapped (non-prelim): 32
length of query: 97
length of database: 324,149,939
effective HSP length: 73
effective length of query: 24
effective length of database: 249,182,078
effective search space: 5980369872
effective search space used: 5980369872
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 90 (39.3 bits)