BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15644984|ref|NP_207154.1| hypothetical protein [Helicobacter pylori 26695] (252 letters) Database: /home/scwang/download_20020708_db/nr 1,026,957 sequences; 324,149,939 total letters Searching..................................................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207154.1|  (NC_000915) hypothetical protein [Helicoba...   523  e-148
ref|NP_223049.1|  (NC_000921) putative [Helicobacter pylori ...   501  e-141
ref|NP_358087.1|  (NC_003098) Conserved hypothetical protein...   246  1e-64

>ref|NP_207154.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||D64564 hypothetical protein HP0356 - Helicobacter pylori (strain 26695)
 gb|AAD07426.1| (AE000552) H. pylori predicted coding region HP0356 [Helicobacter
           pylori 26695]
          Length = 252

 Score =  523 bits (1347), Expect = e-148
 Identities = 252/252 (100%), Positives = 252/252 (100%)

Query: 1   MAKHKNYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLADTTGVIKNRMDLFD 60
           MAKHKNYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLADTTGVIKNRMDLFD
Sbjct: 1   MAKHKNYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLADTTGVIKNRMDLFD 60

Query: 61  YFFPNKRKGWWQKGDAYIHRKLWIDSLFKDEDAKGFSHIVKWFLQEQYGVKDLGITPNAY 120
           YFFPNKRKGWWQKGDAYIHRKLWIDSLFKDEDAKGFSHIVKWFLQEQYGVKDLGITPNAY
Sbjct: 61  YFFPNKRKGWWQKGDAYIHRKLWIDSLFKDEDAKGFSHIVKWFLQEQYGVKDLGITPNAY 120

Query: 121 LKTRYKSMQETGLEAELYFLNHYKNIKIFSCGHLKDMRLFGDGYDFYIQTNKQAFLVEVK 180
           LKTRYKSMQETGLEAELYFLNHYKNIKIFSCGHLKDMRLFGDGYDFYIQTNKQAFLVEVK
Sbjct: 121 LKTRYKSMQETGLEAELYFLNHYKNIKIFSCGHLKDMRLFGDGYDFYIQTNKQAFLVEVK 180

Query: 181 GIREKQGTLRLTQKEYEQAQTYSHDYVLVVVLNLSEKPHLLSIANPLKHLEFKACERKQK 240
           GIREKQGTLRLTQKEYEQAQTYSHDYVLVVVLNLSEKPHLLSIANPLKHLEFKACERKQK
Sbjct: 181 GIREKQGTLRLTQKEYEQAQTYSHDYVLVVVLNLSEKPHLLSIANPLKHLEFKACERKQK 240

Query: 241 SILEYHLIGQIK 252
           SILEYHLIGQIK
Sbjct: 241 SILEYHLIGQIK 252

>ref|NP_223049.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71947 hypothetical protein jhp0330 - Helicobacter pylori (strain J99)
 gb|AAD05904.1| (AE001468) putative [Helicobacter pylori J99]
          Length = 252

 Score =  501 bits (1291), Expect = e-141
 Identities = 239/252 (94%), Positives = 246/252 (96%)

Query: 1   MAKHKNYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLADTTGVIKNRMDLFD 60
           M KH+NYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLA+TTGVIKNRMDLFD
Sbjct: 1   MTKHENYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLAETTGVIKNRMDLFD 60

Query: 61  YFFPNKRKGWWQKGDAYIHRKLWIDSLFKDEDAKGFSHIVKWFLQEQYGVKDLGITPNAY 120
           YFFPNKRKGWWQKGDAYIHRKLWIDSLF +E  KGFSHIVKWFLQEQYG+KDLG+TPNAY
Sbjct: 61  YFFPNKRKGWWQKGDAYIHRKLWIDSLFGNESVKGFSHIVKWFLQEQYGIKDLGVTPNAY 120

Query: 121 LKTRYKSMQETGLEAELYFLNHYKNIKIFSCGHLKDMRLFGDGYDFYIQTNKQAFLVEVK 180
           LKTRYKSMQETGLEAELYFLNHYKNIK FSCGHLKDMRLFGDGYDFYIQ NKQAFLVEVK
Sbjct: 121 LKTRYKSMQETGLEAELYFLNHYKNIKTFSCGHLKDMRLFGDGYDFYIQINKQAFLVEVK 180

Query: 181 GIREKQGTLRLTQKEYEQAQTYSHDYVLVVVLNLSEKPHLLSIANPLKHLEFKACERKQK 240
           GIREKQGTLRLTQKEYEQAQTY+HDYVLVVVLNLSEKP+LLSIANPLKHLEFKACERKQK
Sbjct: 181 GIREKQGTLRLTQKEYEQAQTYNHDYVLVVVLNLSEKPYLLSIANPLKHLEFKACERKQK 240

Query: 241 SILEYHLIGQIK 252
           SILEYHLIGQIK
Sbjct: 241 SILEYHLIGQIK 252

>ref|NP_358087.1| (NC_003098) Conserved hypothetical protein [Streptococcus
           pneumoniae R6]
 gb|AAK99297.1| (AE008428) Conserved hypothetical protein [Streptococcus pneumoniae
           R6]
          Length = 256

 Score =  246 bits (629), Expect = 1e-64
 Identities = 120/248 (48%), Positives = 167/248 (66%), Gaps = 1/248 (0%)

Query: 1   MAKHKNYEILNLIGYALAKFDNDFIKEFGFSTKNAFFEYCVQIGLADTTGVIKNRMDLFD 60
           M+KH +YE+LNLIGY LAKFD  FIKEF  S+K+ F+ Y V +G+A+TTGV+KNRMDLFD
Sbjct: 6   MSKHPHYELLNLIGYGLAKFDKLFIKEFQCSSKSEFYRYVVSLGIAETTGVVKNRMDLFD 65

Query: 61  YFFPNKRKGWWQKGDAYIHRKLWIDSLFKDEDAKGFSHIVKWFLQEQYGVKDLGITPNAY 120
            +F N RKGWWQK + Y  RK  ID +F +ED   ++ IVK  L  +     + I     
Sbjct: 66  PYFDNNRKGWWQKAEVYRFRKDLIDMMFGNEDVHSYAEIVKMLLASEGKKTGITIVEKPI 125

Query: 121 LKTRYKSMQETGLEAELYFLNHYKNIKIFSCGHLKDMRLFGDGYDFYIQTNKQAFLVEVK 180
           ++T++K +QETG+EAE YF+ H+   + F  G L D RL+GDGYDF +   + ++L EVK
Sbjct: 126 VRTKFKRLQETGMEAENYFILHFDKEEKFQGGQLTDARLYGDGYDFQVDVQEYSYLAEVK 185

Query: 181 GIREKQGTLRLTQKEYEQAQTYSHDYVLVVVLNLSEKPHLLSIANPLKHLEFKACERKQK 240
           GIR+ +G +RLT KE+E+ + +  D++L +V NL + P L+ I NPLKH EFK    K +
Sbjct: 186 GIRKSKGRVRLTAKEFEKVKEFQSDFILSLVTNLDDIPKLVLIDNPLKHFEFKKNIIKNE 245

Query: 241 SILEYHLI 248
            I+EY  +
Sbjct: 246 -IIEYRSV 252

  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.323    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,574,412
Number of Sequences: 1026957
Number of extensions: 6894991
Number of successful extensions: 13220
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13217
Number of HSP's gapped (non-prelim): 3
length of query: 252
length of database: 324,149,939
effective HSP length: 118
effective length of query: 134
effective length of database: 202,969,013
effective search space: 27197847742
effective search space used: 27197847742
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 96 (41.6 bits)