BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644669|ref|NP_206838.1| hypothetical protein
[Helicobacter pylori 26695]
(334 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_206838.1| (NC_000915) hypothetical protein [Helicoba... 672 0.0
ref|NP_222754.1| (NC_000921) putative [Helicobacter pylori ... 633 e-180
emb|CAA05824.1| (AJ003049) hypothetical protein; similar to... 182 6e-45
ref|NP_282771.1| (NC_002163) putative periplasmic protein [... 72 1e-11
>ref|NP_206838.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||D64524 hypothetical protein HP0036 - Helicobacter pylori (strain 26695)
gb|AAD07109.1| (AE000525) H. pylori predicted coding region HP0036 [Helicobacter
pylori 26695]
Length = 334
Score = 672 bits (1734), Expect = 0.0
Identities = 334/334 (100%), Positives = 334/334 (100%)
Query: 1 MFHKALITFIVLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTYPK 60
MFHKALITFIVLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTYPK
Sbjct: 1 MFHKALITFIVLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTYPK 60
Query: 61 HAKVIKSDPFVGLYLLQSAPSEYVYTLRDLDKDALIRPMASIGDKEALETRLLVGQRGYE 120
HAKVIKSDPFVGLYLLQSAPSEYVYTLRDLDKDALIRPMASIGDKEALETRLLVGQRGYE
Sbjct: 61 HAKVIKSDPFVGLYLLQSAPSEYVYTLRDLDKDALIRPMASIGDKEALETRLLVGQRGYE 120
Query: 121 RYAQISQKTQKNGVISNICYQMLGLGVGGNGFIETKFIKRFLNQQEPYYGDIGVRLEEHH 180
RYAQISQKTQKNGVISNICYQMLGLGVGGNGFIETKFIKRFLNQQEPYYGDIGVRLEEHH
Sbjct: 121 RYAQISQKTQKNGVISNICYQMLGLGVGGNGFIETKFIKRFLNQQEPYYGDIGVRLEEHH 180
Query: 181 KRLVVVQFDPFFPKNPFLKNDEILAINHQKIHSLAEFEWVVSNLKYQSLAKVEIKRNHKV 240
KRLVVVQFDPFFPKNPFLKNDEILAINHQKIHSLAEFEWVVSNLKYQSLAKVEIKRNHKV
Sbjct: 181 KRLVVVQFDPFFPKNPFLKNDEILAINHQKIHSLAEFEWVVSNLKYQSLAKVEIKRNHKV 240
Query: 241 KEVTLKVNKRYGGFLLKDTFLERYGIALDERFIITKIGAHLPKGLDFLKLGDRILWVNYK 300
KEVTLKVNKRYGGFLLKDTFLERYGIALDERFIITKIGAHLPKGLDFLKLGDRILWVNYK
Sbjct: 241 KEVTLKVNKRYGGFLLKDTFLERYGIALDERFIITKIGAHLPKGLDFLKLGDRILWVNYK 300
Query: 301 SVASNPKALREALSAPKIELLVLRKGFEFYIKVR 334
SVASNPKALREALSAPKIELLVLRKGFEFYIKVR
Sbjct: 301 SVASNPKALREALSAPKIELLVLRKGFEFYIKVR 334
>ref|NP_222754.1| (NC_000921) putative [Helicobacter pylori J99]
pir||F71983 hypothetical protein jhp0032 - Helicobacter pylori (strain J99)
gb|AAD05603.1| (AE001442) putative [Helicobacter pylori J99]
Length = 335
Score = 633 bits (1632), Expect = e-180
Identities = 312/334 (93%), Positives = 322/334 (95%)
Query: 1 MFHKALITFIVLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTYPK 60
MFHKALITFIVLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTYPK
Sbjct: 2 MFHKALITFIVLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTYPK 61
Query: 61 HAKVIKSDPFVGLYLLQSAPSEYVYTLRDLDKDALIRPMASIGDKEALETRLLVGQRGYE 120
HAKVIKSDPF+GLYLLQSAPSEYVYTLRDLDKDALIRPMASIG +A E RLLVGQ+GY+
Sbjct: 62 HAKVIKSDPFIGLYLLQSAPSEYVYTLRDLDKDALIRPMASIGANQATEARLLVGQKGYD 121
Query: 121 RYAQISQKTQKNGVISNICYQMLGLGVGGNGFIETKFIKRFLNQQEPYYGDIGVRLEEHH 180
RYAQISQKTQKNGVISNICYQMLGLGVGGNGFIETKFIKRFLNQQEPYYGDIGVRLEE H
Sbjct: 122 RYAQISQKTQKNGVISNICYQMLGLGVGGNGFIETKFIKRFLNQQEPYYGDIGVRLEERH 181
Query: 181 KRLVVVQFDPFFPKNPFLKNDEILAINHQKIHSLAEFEWVVSNLKYQSLAKVEIKRNHKV 240
KRLVV QFDPFFPKNPFLKNDEILAIN KIHSLAEFEWVVSNL YQSLAKV+IKRNH++
Sbjct: 182 KRLVVAQFDPFFPKNPFLKNDEILAINDYKIHSLAEFEWVVSNLSYQSLAKVKIKRNHQI 241
Query: 241 KEVTLKVNKRYGGFLLKDTFLERYGIALDERFIITKIGAHLPKGLDFLKLGDRILWVNYK 300
KEVTLKVNKRYGGFLLKDTFLERYGIALDERFIITKIGAHLPKGLDFLKLGDRILWVN+K
Sbjct: 242 KEVTLKVNKRYGGFLLKDTFLERYGIALDERFIITKIGAHLPKGLDFLKLGDRILWVNHK 301
Query: 301 SVASNPKALREALSAPKIELLVLRKGFEFYIKVR 334
SV+ NPKALREALS PKIELLV R+GFEFYIKVR
Sbjct: 302 SVSFNPKALREALSTPKIELLVWRQGFEFYIKVR 335
>emb|CAA05824.1| (AJ003049) hypothetical protein; similar to HP0036 from
Helicobacter pylori [Wolinella succinogenes]
Length = 341
Score = 182 bits (461), Expect = 6e-45
Identities = 112/325 (34%), Positives = 173/325 (52%), Gaps = 3/325 (0%)
Query: 11 VLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTYPKHAKVIKSDPF 70
+LW + L YDF C +S + G + + L+YSKT PK K++KSDP+
Sbjct: 9 LLWSGM-ALFGYDFSRCGERIALSSEKVGDSYGLAIDEKRLLHYSKTPPKGYKILKSDPY 67
Query: 71 VGLYLLQSAPSEYVYTLRDLDKDALIRPMASIGDKEALETRLLVGQRGYERYAQISQKTQ 130
VGLYLL++ + LRD+ + + + + + +E + G YA+ SQK+
Sbjct: 68 VGLYLLEAKKPKVPLELRDITPETMEDILGAGTPEGFMEGNITQRMSGLLAYARFSQKSP 127
Query: 131 KNGVISNICYQMLGLGVGGNGFIETKFIKRFLNQQEPYYGDIGVRLEEHHKRLVVVQFDP 190
N +IS+ICYQ+ GLGVGGN FIE+ +IKRFL Q+ YGD+ +R E++ + VV DP
Sbjct: 128 PNSIISSICYQIYGLGVGGNEFIESSYIKRFLEQKRVQYGDLLIRFEKNRREPVVALIDP 187
Query: 191 FFPKNPFLKNDEILAINHQKIHSLAEFEWVVSNLKYQSLAKVEIKRNHKVKEVTLKVNKR 250
F +N F D +L++ + I S +E E + L +V + R +V +V R
Sbjct: 188 FIEENLFRLGDRVLSLEGRAIGSRSELENQIYGLAPGREVRVSVMREGEVVSFETRVYPR 247
Query: 251 YGGFLLKDTFLERYGIALDERFIITKIGAHLPKGLDFLKLGDRILWVNYKSVASNPKALR 310
GG LL D LER G+ + + + +GL+ L+ GD+IL VN + + LR
Sbjct: 248 IGGMLLPDHLLERVGLRFSQDWSLQAAHKMQGRGLENLQAGDQILRVNGIDMPQGEEGLR 307
Query: 311 --EALSAPKIELLVLRKGFEFYIKV 333
++ ++ L+ R FEF+IKV
Sbjct: 308 LLSRFASEEMSWLIRRGEFEFFIKV 332
>ref|NP_282771.1| (NC_002163) putative periplasmic protein [Campylobacter jejuni]
pir||A81261 probable periplasmic protein Cj1643 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB73631.1| (AL139079) putative periplasmic protein [Campylobacter jejuni]
Length = 364
Score = 71.6 bits (174), Expect = 1e-11
Identities = 78/319 (24%), Positives = 137/319 (42%), Gaps = 45/319 (14%)
Query: 32 KKASLQKGGVALKELPKGVYLYYSKTYPKHAKVIKSDPFVGLYLLQSAPSEYVYTLRDLD 91
K + L G+ L + + + K K +K DPF+ LYL+++ D
Sbjct: 33 KASMLNYEGMPAFALSENLLAVLKQPNAKLNKYVKYDPFLNLYLVRT------------D 80
Query: 92 KDALIRPMASIGDKEALETRLLVG-------QRGYERYA--QISQKTQ-----KNGVISN 137
+ PM GD+E L VG G+ +Y I +K Q K G++
Sbjct: 81 FSLIPTPM---GDEEKLTRNDWVGIWDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGT 137
Query: 138 ICYQMLGLGVGGNGFIETKFIKRFLNQQEPYYGDIGVRLEEHHKRLVVVQFDPFFPKNP- 196
C +M+G+ + + FI +++K F+ + Y+GDIGV ++ V KNP
Sbjct: 138 PCCEMMGIALNNSSFIGNRYLKHFMKYNDVYWGDIGVDFVVRENKIYVNN----VRKNPQ 193
Query: 197 FLKNDEILAINHQKIHSLAEFEWVVSNLKYQSLAKVEIKRNHKVKEVTLKV-NKRYGGFL 255
FL ND++++++ + L + + S ++ R++ ++ +V K F
Sbjct: 194 FLINDQVISVDGLPANDLRKLNEKILFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFN 253
Query: 256 LKDT--------FLERYGIALDERFIITKIGAHLPKGLDFLKLGDRILWVNYKSVASNPK 307
L D+ F G+ ++ ++TKI +GD+IL VN + +N K
Sbjct: 254 LPDSKPKPKITNFTSNLGLTVNASLVVTKIDPKSKVSNAGFMVGDKILRVN-NIILNNFK 312
Query: 308 ALREALSAPK-IELLVLRK 325
L+ LSA +L+ RK
Sbjct: 313 ELQNILSAGNDFSILIERK 331
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.324 0.143 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,982,840
Number of Sequences: 1026957
Number of extensions: 8914443
Number of successful extensions: 17464
Number of sequences better than 1.0e-02: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17456
Number of HSP's gapped (non-prelim): 4
length of query: 334
length of database: 324,149,939
effective HSP length: 121
effective length of query: 213
effective length of database: 199,888,142
effective search space: 42576174246
effective search space used: 42576174246
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 97 (42.0 bits)