BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644996|ref|NP_207166.1| hypothetical protein
[Helicobacter pylori 26695]
         (133 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207166.1|  (NC_000915) hypothetical protein [Helicoba...   274  1e-73
ref|NP_223730.1|  (NC_000921) putative [Helicobacter pylori ...   259  4e-69

>ref|NP_207166.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||H64565 hypothetical protein HP0368 - Helicobacter pylori (strain 26695)
 gb|AAD07437.1| (AE000553) H. pylori predicted coding region HP0368 [Helicobacter
           pylori 26695]
          Length = 133

 Score =  274 bits (701), Expect = 1e-73
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MLNAIDGVINDGIIHDEYDIMTKSGVSFEVKTARKGRTNNTFQFNGINPRYNYDFLICLG 60
           MLNAIDGVINDGIIHDEYDIMTKSGVSFEVKTARKGRTNNTFQFNGINPRYNYDFLICLG
Sbjct: 1   MLNAIDGVINDGIIHDEYDIMTKSGVSFEVKTARKGRTNNTFQFNGINPRYNYDFLICLG 60

Query: 61  VCEDQLLYRIFKKDKIHYIHKERKYFMKQNEFKKQLVPMNPDNQVNYKLTLNLKELKEIT 120
           VCEDQLLYRIFKKDKIHYIHKERKYFMKQNEFKKQLVPMNPDNQVNYKLTLNLKELKEIT
Sbjct: 61  VCEDQLLYRIFKKDKIHYIHKERKYFMKQNEFKKQLVPMNPDNQVNYKLTLNLKELKEIT 120

Query: 121 NLIKELERVLGLD 133
           NLIKELERVLGLD
Sbjct: 121 NLIKELERVLGLD 133



>ref|NP_223730.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||A71861 hypothetical protein jhp1013 - Helicobacter pylori (strain J99)
 gb|AAD06592.1| (AE001529) putative [Helicobacter pylori J99]
          Length = 182

 Score =  259 bits (662), Expect = 4e-69
 Identities = 126/133 (94%), Positives = 130/133 (97%)

Query: 1   MLNAIDGVINDGIIHDEYDIMTKSGVSFEVKTARKGRTNNTFQFNGINPRYNYDFLICLG 60
           +LNAID VINDGIIHDEYDIMTKSGVSFEVKTA+KGRTNNTFQFNGINPRYNYDFLICLG
Sbjct: 50  VLNAIDEVINDGIIHDEYDIMTKSGVSFEVKTAQKGRTNNTFQFNGINPRYNYDFLICLG 109

Query: 61  VCEDQLLYRIFKKDKIHYIHKERKYFMKQNEFKKQLVPMNPDNQVNYKLTLNLKELKEIT 120
           VCEDQLLYRIFKKD+IHYIHKERKYFMKQNEFKKQLVPMNPDNQVN KLTLNLKELKEIT
Sbjct: 110 VCEDQLLYRIFKKDEIHYIHKERKYFMKQNEFKKQLVPMNPDNQVNDKLTLNLKELKEIT 169

Query: 121 NLIKELERVLGLD 133
           NLIKELER+L LD
Sbjct: 170 NLIKELERILELD 182



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.322    0.142    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,061,375
Number of Sequences: 1026957
Number of extensions: 3494555
Number of successful extensions: 9069
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9067
Number of HSP's gapped (non-prelim): 2
length of query: 133
length of database: 324,149,939
effective HSP length: 109
effective length of query: 24
effective length of database: 212,211,626
effective search space: 5093079024
effective search space used: 5093079024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 89 (38.9 bits)