BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644997|ref|NP_207167.1| hypothetical protein
[Helicobacter pylori 26695]
(236 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207167.1| (NC_000915) hypothetical protein [Helicoba... 490 e-138
ref|NP_223729.1| (NC_000921) putative TYPE II DNA MODIFICAT... 447 e-125
gb|AAC03123.1| (AF021248) DNA adenine methyltransferase [Ch... 69 6e-11
>ref|NP_207167.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
pir||A64566 hypothetical protein HP0369 - Helicobacter pylori (strain 26695)
gb|AAD07438.1| (AE000553) H. pylori predicted coding region HP0369 [Helicobacter
pylori 26695]
Length = 236
Score = 490 bits (1262), Expect = e-138
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MKLLKNTKIQMTFYKLPTHQKVICLGNPPFGHRGVMALEFINHARSCDFVCFILPMFFES 60
MKLLKNTKIQMTFYKLPTHQKVICLGNPPFGHRGVMALEFINHARSCDFVCFILPMFFES
Sbjct: 1 MKLLKNTKIQMTFYKLPTHQKVICLGNPPFGHRGVMALEFINHARSCDFVCFILPMFFES 60
Query: 61 QGKGSIKYRVKGLNLLYSERLEKNAFIDFKNKEVDVHCVFQIWSKKYQNKKSEFSWYKNR 120
QGKGSIKYRVKGLNLLYSERLEKNAFIDFKNKEVDVHCVFQIWSKKYQNKKSEFSWYKNR
Sbjct: 61 QGKGSIKYRVKGLNLLYSERLEKNAFIDFKNKEVDVHCVFQIWSKKYQNKKSEFSWYKNR 120
Query: 121 HKEPFSEYIKVFTVSLAKNRECGKEWIFNQKASFYISSTFYKSTQIVENFEEVKYKSGIA 180
HKEPFSEYIKVFTVSLAKNRECGKEWIFNQKASFYISSTFYKSTQIVENFEEVKYKSGIA
Sbjct: 121 HKEPFSEYIKVFTVSLAKNRECGKEWIFNQKASFYISSTFYKSTQIVENFEEVKYKSGIA 180
Query: 181 VVFTSTNKALNTKLKKLFKEIDWTKYASLATNSCYHLGKSHIFQALYDHLDSLKDN 236
VVFTSTNKALNTKLKKLFKEIDWTKYASLATNSCYHLGKSHIFQALYDHLDSLKDN
Sbjct: 181 VVFTSTNKALNTKLKKLFKEIDWTKYASLATNSCYHLGKSHIFQALYDHLDSLKDN 236
>ref|NP_223729.1| (NC_000921) putative TYPE II DNA MODIFICATION ENZYME
(METHYLTRANSFERASE) [Helicobacter pylori J99]
pir||H71860 probable type II DNA modification enzyme (methyltransferase) -
Helicobacter pylori (strain J99)
gb|AAD06593.1| (AE001529) putative TYPE II DNA MODIFICATION ENZYME
(METHYLTRANSFERASE) [Helicobacter pylori J99]
Length = 320
Score = 447 bits (1151), Expect = e-125
Identities = 213/223 (95%), Positives = 218/223 (97%)
Query: 14 YKLPTHQKVICLGNPPFGHRGVMALEFINHARSCDFVCFILPMFFESQGKGSIKYRVKGL 73
YKLP HQKVICLGNPPFGHRGVMALEFINHAR+CDFVCFILPMFFESQGKGSIKYRVKGL
Sbjct: 98 YKLPVHQKVICLGNPPFGHRGVMALEFINHARNCDFVCFILPMFFESQGKGSIKYRVKGL 157
Query: 74 NLLYSERLEKNAFIDFKNKEVDVHCVFQIWSKKYQNKKSEFSWYKNRHKEPFSEYIKVFT 133
NLLYSERLEKNAFIDFKNKEVDVHCVFQIWSKKYQNKKSEFSWYKNRHKEPFSEYIKVFT
Sbjct: 158 NLLYSERLEKNAFIDFKNKEVDVHCVFQIWSKKYQNKKSEFSWYKNRHKEPFSEYIKVFT 217
Query: 134 VSLAKNRECGKEWIFNQKASFYISSTFYKSTQIVENFEEVKYKSGIAVVFTSTNKALNTK 193
VSLAKNRECGKEWIFNQKASFYISSTFYKSTQIVENFEEVKY+SGIAVVFTS +K LN K
Sbjct: 218 VSLAKNRECGKEWIFNQKASFYISSTFYKSTQIVENFEEVKYQSGIAVVFTSADKVLNAK 277
Query: 194 LKKLFKEIDWTKYASLATNSCYHLGKSHIFQALYDHLDSLKDN 236
LKKLF+EIDWTKYASLATNSCYHLGKSHIFQAL+DHLDSLK N
Sbjct: 278 LKKLFQEIDWTKYASLATNSCYHLGKSHIFQALHDHLDSLKGN 320
>gb|AAC03123.1| (AF021248) DNA adenine methyltransferase [Chlorella virus NY2A]
Length = 267
Score = 68.6 bits (166), Expect = 6e-11
Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 14 YKLPT-HQKVICLGNPPFGHRGVMALEFINHA-RSCDFVCFILPMFFESQGKGSIKYRV- 70
Y++P+ K+ +GNPPFG G MAL+F+ H+ + + V FILP F+ K S ++
Sbjct: 69 YQVPSGFDKIHVIGNPPFGKNGSMALKFMKHSMKFAESVSFILPKSFK---KESFMMKIP 125
Query: 71 KGLNLLYSERLEKNAFIDFKNKEVDVHCVFQIWSKKYQNKKSEF 114
K L Y L+KN+F+ K + DV CVFQIW K K F
Sbjct: 126 KNFELAYQIDLQKNSFL-VKGERYDVPCVFQIWKKNNDGKFRSF 168
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.322 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,828,201
Number of Sequences: 1026957
Number of extensions: 5997871
Number of successful extensions: 12939
Number of sequences better than 1.0e-02: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12936
Number of HSP's gapped (non-prelim): 3
length of query: 236
length of database: 324,149,939
effective HSP length: 117
effective length of query: 119
effective length of database: 203,995,970
effective search space: 24275520430
effective search space used: 24275520430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 95 (41.2 bits)