BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645002|ref|NP_207172.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(226 letters)
Database: /home/scwang/download_20020708_db/nr
1,026,957 sequences; 324,149,939 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_207172.1| (NC_000915) conserved hypothetical protein... 442 e-123
ref|NP_223724.1| (NC_000921) putative [Helicobacter pylori ... 416 e-116
ref|NP_281367.1| (NC_002163) hypothetical protein Cj0156c [... 170 1e-41
ref|NP_212492.1| (NC_001318) conserved hypothetical protein... 66 3e-10
ref|NP_622610.1| (NC_003869) conserved hypothetical protein... 63 2e-09
ref|NP_438470.1| (NC_000907) conserved hypothetical protein... 62 5e-09
ref|NP_562942.1| (NC_003366) conserved hypothetical protein... 60 1e-08
ref|NP_246807.1| (NC_002663) unknown [Pasteurella multocida... 58 7e-08
ref|NP_326373.1| (NC_002771) conserved hypothetical protein... 57 1e-07
ref|NP_643378.1| (NC_003919) conserved hypothetical protein... 56 3e-07
gb|AAF18294.1| (AF088897) hypothetical protein; orf12 [Zymo... 55 8e-07
ref|NP_213112.1| (NC_000918) hypothetical protein [Aquifex ... 54 1e-06
ref|NP_404551.1| (NC_003143) conserved hypothetical protein... 52 5e-06
ref|NP_638233.1| (NC_003902) conserved hypothetical protein... 51 8e-06
ref|NP_347916.1| (NC_003030) Uncharacterized conserved prot... 50 1e-05
sp|O50188|YCA5_MYCHY Hypothetical 26.3 kDa protein in ciliu... 50 1e-05
ref|NP_289518.1| (NC_002655) orf, hypothetical protein [Esc... 50 2e-05
ref|NP_230123.1| (NC_002505) conserved hypothetical protein... 50 2e-05
sp|P37912|YGGJ_ECOLI Hypothetical protein yggJ 50 2e-05
ref|NP_531357.1| (NC_003304) conserved hypothetical protein... 50 2e-05
ref|NP_353680.1| (NC_003062) AGR_C_1169p [Agrobacterium tum... 50 2e-05
ref|NP_384877.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN... 50 2e-05
ref|NP_229181.1| (NC_000853) conserved hypothetical protein... 48 7e-05
ref|NP_457486.1| (NC_003198) conserved hypothetical protein... 46 3e-04
ref|NP_422209.1| (NC_002696) conserved hypothetical protein... 45 5e-04
ref|NP_372101.1| (NC_002758) conserved hypothetical protein... 45 8e-04
ref|NP_462010.1| (NC_003197) putative cytoplasmic protein [... 44 0.001
ref|NP_249110.1| (NC_002516) conserved hypothetical protein... 44 0.002
ref|NP_646346.1| (NC_003923) conserved hypothetical protein... 43 0.002
ref|NP_297483.1| (NC_002488) conserved hypothetical protein... 42 0.004
ref|NP_470843.1| (NC_003212) similar to unknown proteins [L... 42 0.004
ref|NP_464995.1| (NC_003210) similar to unknown proteins [L... 42 0.004
>ref|NP_207172.1| (NC_000915) conserved hypothetical protein [Helicobacter pylori
26695]
sp|O25138|Y374_HELPY Hypothetical protein HP0374
pir||F64566 conserved hypothetical protein HP0374 - Helicobacter pylori
(strain 26695)
gb|AAD07443.1| (AE000554) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 226
Score = 442 bits (1136), Expect = e-123
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MRFVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHAL 60
MRFVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHAL
Sbjct: 1 MRFVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHAL 60
Query: 61 LKLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDI 120
LKLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDI
Sbjct: 61 LKLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDI 120
Query: 121 AKLERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPASADFEKG 180
AKLERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPASADFEKG
Sbjct: 121 AKLERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPASADFEKG 180
Query: 181 VIIGPEGGFSEPERGYFKEREIYRIPLDMVLKSESACVFVASIAQV 226
VIIGPEGGFSEPERGYFKEREIYRIPLDMVLKSESACVFVASIAQV
Sbjct: 181 VIIGPEGGFSEPERGYFKEREIYRIPLDMVLKSESACVFVASIAQV 226
>ref|NP_223724.1| (NC_000921) putative [Helicobacter pylori J99]
sp|Q9ZKD2|Y374_HELPJ Hypothetical protein JHP1007
pir||C71860 hypothetical protein jhp1007 - Helicobacter pylori (strain J99)
gb|AAD06587.1| (AE001529) putative [Helicobacter pylori J99]
Length = 226
Score = 416 bits (1070), Expect = e-116
Identities = 210/226 (92%), Positives = 216/226 (94%)
Query: 1 MRFVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHAL 60
MRFVYHPLAKEP LKIEGESY HLYRSRR+KSASRLDLRNLKDGFLYTYEHAEI KKHAL
Sbjct: 1 MRFVYHPLAKEPTLKIEGESYIHLYRSRRIKSASRLDLRNLKDGFLYTYEHAEIAKKHAL 60
Query: 61 LKLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDI 120
L+LVG + LE+MA+KKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKID
Sbjct: 61 LRLVGVQPLEIMANKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDS 120
Query: 121 AKLERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPASADFEKG 180
AKLERFQKILIHSCEQCGRS LMELE FSNTKEALKAYPKASVLDF GETLPASADFEKG
Sbjct: 121 AKLERFQKILIHSCEQCGRSVLMELEAFSNTKEALKAYPKASVLDFNGETLPASADFEKG 180
Query: 181 VIIGPEGGFSEPERGYFKEREIYRIPLDMVLKSESACVFVASIAQV 226
VIIGPEGGFSE ERGYFKEREIYRIPLDMVLKSESACVFVASIAQ+
Sbjct: 181 VIIGPEGGFSEQERGYFKEREIYRIPLDMVLKSESACVFVASIAQI 226
>ref|NP_281367.1| (NC_002163) hypothetical protein Cj0156c [Campylobacter jejuni]
pir||D81433 hypothetical protein Cj0156c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB72640.1| (AL139074) hypothetical protein Cj0156c [Campylobacter jejuni]
Length = 218
Score = 170 bits (431), Expect = 1e-41
Identities = 95/222 (42%), Positives = 145/222 (64%), Gaps = 8/222 (3%)
Query: 1 MRFVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHAL 60
M+F+Y+ A E ++++GE++ HL + RRVK S L+LRNL+D FLY Y +T+
Sbjct: 1 MQFLYNKQAGEEFIQLQGENFNHL-KVRRVKENSELNLRNLQDNFLYNYTITNLTRNSCT 59
Query: 61 LKLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDI 120
LK + + + S+ +L L++I+IK +EK LPFLN+LGV KL L + +FSQRN KID
Sbjct: 60 LKFLNKKSQNIKQSE-LNLALAIIDIKILEKTLPFLNELGVKKLHLVFTNFSQRNFKID- 117
Query: 121 AKLERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPASADFEKG 180
LERF+KI+I SCEQCGR+ M+L + +T+E ++ +P A ++DF+GE + D ++
Sbjct: 118 --LERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVDFQGEQ-QSHFDEKEL 174
Query: 181 VIIGPEGGFSEPERGYFKEREIYRIPLDMVLKSESACVFVAS 222
IGPEGGF+ ER F + + +LKS++A + +AS
Sbjct: 175 YFIGPEGGFNNDERLLFNRK--ISLKSSNILKSQTAIIAIAS 214
>ref|NP_212492.1| (NC_001318) conserved hypothetical protein [Borrelia burgdorferi]
sp|O51333|Y358_BORBU Hypothetical protein BB0358
pir||E70144 conserved hypothetical protein BB0358 - Lyme disease spirochete
gb|AAC66730.1| (AE001141) conserved hypothetical protein [Borrelia burgdorferi]
Length = 243
Score = 65.9 bits (159), Expect = 3e-10
Identities = 62/228 (27%), Positives = 117/228 (51%), Gaps = 25/228 (10%)
Query: 8 LAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLKLVGAR 67
LA ++ + + Y HL RR+K +L++ LKD L E +I +K +
Sbjct: 11 LAGNFIIVKDAKIYHHLVNVRRLKKGDKLNIL-LKDKELRASEIVKIGSN--FIKFTTNK 67
Query: 68 LLEVMASK-KTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDI----AK 122
+ ++ + + + +S ++ + I+ +L + ++GVS++++ AD S KIDI AK
Sbjct: 68 IDKIEKNNFEISIFISSLKGRKIDLVLRQVVEIGVSEINIINADRSV--SKIDINNASAK 125
Query: 123 LERFQKILIHSCEQCGRSALMELEVFSN---------TKEALKAYPKASVLDFKGETLPA 173
+ RF KI+ + +Q G + ++ ++N T A+P +L K E+
Sbjct: 126 ILRFSKIIDEALKQSGNKIVPKINFYNNFFYLPYSFCTTRYYVAHPSGMILS-KNESFD- 183
Query: 174 SADFEK-GVIIGPEGGFSEPERGYFKEREIYRIPLDM-VLKSESACVF 219
+F K G+IIGPEG FSE E +FKE+ + + +L++++A ++
Sbjct: 184 --NFGKIGIIIGPEGCFSESEIVFFKEKGFNFVRFNTPILRADTAIIY 229
>ref|NP_622610.1| (NC_003869) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
gb|AAM24214.1| (AE013061) conserved hypothetical protein [Thermoanaerobacter
tengcongensis]
Length = 245
Score = 63.2 bits (152), Expect = 2e-09
Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 19/223 (8%)
Query: 16 IEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLKLVGARLLEVMASK 75
++G+ + HL R K ++ + ++ + L E +I K A+L L +
Sbjct: 18 VDGKDFHHLIHVLRYKVGDKIVVSDMAEEHLGRIE--KIEKDRAILFLEEKMEGNAESPL 75
Query: 76 KTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQ---RNEKIDIAKLERFQKILIH 132
+ L +++ ++ I+ ++GV ++ F ++FS + ID K+ER++KI
Sbjct: 76 EVFLFQGILKADKMDLIVQKCTEIGVKRIIPFVSEFSVVDIKRANID-KKVERWKKISEE 134
Query: 133 SCEQCGRSALMELEVFSNTKEALK----------AYPKASVLDFKGETLPASADFEK-GV 181
+C+Q GR+ + E+ + KEA++ Y K K E L D +K G+
Sbjct: 135 ACKQSGRNIIPEISAPVSFKEAIEKAMECDLAIIPYEKEEKKRLK-EVLKDVEDAKKIGI 193
Query: 182 IIGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESACVFVASI 223
IGPEGGFS+ E I + L +L++E+A + V++I
Sbjct: 194 FIGPEGGFSQKEIEKAINNGIVPVTLGPRILRAETAAIAVSAI 236
>ref|NP_438470.1| (NC_000907) conserved hypothetical protein [Haemophilus influenzae
Rd]
sp|P44627|YGGJ_HAEIN Hypothetical protein HI0303
pir||D64147 hypothetical protein HI0303 - Haemophilus influenzae (strain Rd
KW20)
gb|AAC21968.1| (U32716) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 245
Score = 62.0 bits (149), Expect = 5e-09
Identities = 57/238 (23%), Positives = 114/238 (46%), Gaps = 20/238 (8%)
Query: 4 VYHPLAKEPVLK--IEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALL 61
+YHP++ E + + ++ H+ R R+ +L+L + +Y + E KK +
Sbjct: 6 IYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFD-GSNHIYPAKIIESNKKSVKV 64
Query: 62 KLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYAD---FSQRNEKI 118
+++G L + + K HL + + +E + +LGV+ ++ +++ E++
Sbjct: 65 EILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERM 124
Query: 119 DIAKLERFQKILIHSCEQCGRSALMELEVFSNTKE---------ALKAYPKASVLDFKGE 169
D K++++QKI I +CEQCGR+ + E+ ++ L +P+A + +
Sbjct: 125 D-KKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRA---HYSIK 180
Query: 170 TLPASADFEKGVIIGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESACVFVASIAQV 226
TLP ++IG EGG S E +++ I L VL++E+A + S Q+
Sbjct: 181 TLPTIPAGGVRLLIGSEGGLSAQEIAQTEQQGFTEILLGKRVLRTETASLAAISALQI 238
>ref|NP_562942.1| (NC_003366) conserved hypothetical protein [Clostridium
perfringens]
dbj|BAB81732.1| (AP003192) conserved hypothetical protein [Clostridium perfringens]
Length = 250
Score = 60.5 bits (145), Expect = 1e-08
Identities = 56/226 (24%), Positives = 104/226 (45%), Gaps = 17/226 (7%)
Query: 15 KIEGESYTHLYRSRRVKSASRLDLRNLK-DGFLYTYEHAEITKKHALLKLVGARLLEVMA 73
KI GE H+Y+ RVK ++ + NL+ + FL E E+ K+ +K++ + +
Sbjct: 17 KITGEDVKHIYKVLRVKPGEKVVVNNLESEEFLGEVE--EVNKQEVSIKILEKLDVNNES 74
Query: 74 SKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDIAKLERFQKILIHS 133
+ L + + ++ I+ +LGVS++ D K + KL+R KI + +
Sbjct: 75 NLNITLFQGMPKAAKMDLIVQKCVELGVSEIIPTITDRVDVKLKGEFKKLDRLNKIALEA 134
Query: 134 CEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPA-----------SADFEK--G 180
C+Q R+ + E+ + K L+ + ++ E + D K G
Sbjct: 135 CKQSKRTVIPEVLEPMDFKGVLEKIDELDLMVIPYENATGYGIRAMVNSIENKDSIKNVG 194
Query: 181 VIIGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESACVFVASIAQ 225
+++GPEGGF E E KE+ + + L +L++E+A S+ Q
Sbjct: 195 IMVGPEGGFEESEIEALKEKGAHIVTLGPRILRTETAGFTCISLIQ 240
>ref|NP_246807.1| (NC_002663) unknown [Pasteurella multocida]
gb|AAK03952.1| (AE006224) unknown [Pasteurella multocida]
Length = 244
Score = 58.2 bits (139), Expect = 7e-08
Identities = 54/239 (22%), Positives = 115/239 (47%), Gaps = 22/239 (9%)
Query: 4 VYHPLAKEPV--LKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALL 61
+YHP+ + V ++ ++ H+ R R+++ +L L + +Y + +I+KKH +
Sbjct: 6 IYHPVLLQGVKHCELSEDAANHVGRVLRMQAGDKLVLFD-GSNHVYDAQITQISKKHVEV 64
Query: 62 KLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDIA 121
++ + + + K HL + + +E + +LGV ++ +++ + K+D
Sbjct: 65 DILQHQWDDRESPLKIHLGQVISRGERMEFTIQKSVELGVHVITPLWSE--RCGVKLDAD 122
Query: 122 KLER----FQKILIHSCEQCGRSALMELEVFSNTKE---------ALKAYPKASVLDFKG 168
+LE+ +QKI + +CEQCGR+ + E+ ++ L +P+A +
Sbjct: 123 RLEKKIQQWQKIAVAACEQCGRNVVPEIRPMMKLQDWCAEKDGALKLNLHPRA---QYSI 179
Query: 169 ETLPASADFEKGVIIGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESACVFVASIAQV 226
TLP ++IG EGG S E ++++ + L VL++E+A + + Q+
Sbjct: 180 RTLPDIPAAGVRLLIGSEGGLSAQEIAQTEQQDFIEVLLGKRVLRTETASLAAITALQI 238
>ref|NP_326373.1| (NC_002771) conserved hypothetical protein [Mycoplasma pulmonis]
emb|CAC13715.1| (AL445565) conserved hypothetical protein [Mycoplasma pulmonis]
Length = 223
Score = 57.4 bits (137), Expect = 1e-07
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 20/179 (11%)
Query: 60 LLKLVGARLLEVMASKKTH-------LILSVIEIKNIEKILPFLNQLGVSKLSLFYADFS 112
L KL G + L + H L +SVI K E + +LGVS LF S
Sbjct: 44 LCKLEGKKALIIEKIDANHEFKNQVILAMSVINTKRFELTIQKAAELGVS---LFIPMLS 100
Query: 113 QRNEK-----IDIAKLERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKAS-VLDF 166
Q E+ ID KL+R++ I +++CEQ R+ +ME+ + E ++ K +
Sbjct: 101 QNVEQKLGNDID-KKLQRWKTIALNACEQSFRNKVMEITYPKSFNEVIEMEVKNKYIAHE 159
Query: 167 KGETLPASADFEKG--VIIGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESACVFVAS 222
K + + FE +IGPEGGFS+ E +E+ I L +L++E+A FV S
Sbjct: 160 KAKDFLTKSSFETNSLFLIGPEGGFSQKEIDLAQEKSFELIWLGKRILRAETAAFFVLS 218
>ref|NP_643378.1| (NC_003919) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
gb|AAM37914.1| (AE011949) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 244
Score = 55.8 bits (133), Expect = 3e-07
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 21/225 (9%)
Query: 7 PLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEIT---KKHALLKL 63
PL + + + ES HL R R++ L N DG Y HA IT K+ A ++
Sbjct: 11 PLHCDQEVTLPEESANHLLRVLRLREGDACILFN-GDGSDY---HARITVAGKRDARARV 66
Query: 64 VGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDIAKL 123
A L + + L+ + + ++ IL +LGV+ + A+ ++ K+D A+
Sbjct: 67 ERAEPLSNESPLRITLMQGIARGEKMDLILQKATELGVAAIVPVIAERTE--VKLDAART 124
Query: 124 ER----FQKILIHSCEQCGRSALMELEV---FSNTKEALKAYPKASVLDFKGE----TLP 172
E+ ++ +++ +CEQ GR+ L + + +A A+ LD +GE TL
Sbjct: 125 EKRVAHWRSVVVSACEQSGRARLPSVAAPQGLQDAAQASDAHALRLTLDPQGEHRLGTLA 184
Query: 173 ASADFEKGVIIGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESA 216
+S V IGPEGG+S +R E + L +L++E+A
Sbjct: 185 SSIQQHIVVAIGPEGGWSPRDRALLAEAGFSGLQLGPRILRTETA 229
>gb|AAF18294.1| (AF088897) hypothetical protein; orf12 [Zymomonas mobilis]
Length = 256
Score = 54.7 bits (130), Expect = 8e-07
Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 17/231 (7%)
Query: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62
+V L+ E V+ + +L R K S+L L + G + E E +KH LK
Sbjct: 16 YVEEKLSLEAVIIPDRAQAHYLLSVMRFKMGSQLVLFDNLTGE-WLGEVIEAGRKHLQLK 74
Query: 63 LVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDIAK 122
+ L E + L+ + I+ I+ I +LGV++++ +QR +D
Sbjct: 75 ITH-HLNEKESIPDLWLLTAPIKKGRIDWIYEKACELGVARITPV---ITQRTI-VDRVN 129
Query: 123 LERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGET-------LPASA 175
LER Q ++ + EQCGR++L E+ + L +P+ L F ET +
Sbjct: 130 LERLQAHIVEAAEQCGRTSLSEVTEACSLISLLAEWPEDRALFFADETGGEPMIEALSKR 189
Query: 176 DFEKGVIIGPEGGFSEPERGYFKEREIYRIPLDM---VLKSESACVFVASI 223
+++GPEGGF++ ER + +P+ + +L++++A + ++
Sbjct: 190 KMAAAILVGPEGGFTDQERDMINAVK-QAVPVSLGPRILRADTAAIAATAL 239
>ref|NP_213112.1| (NC_000918) hypothetical protein [Aquifex aeolicus]
sp|O66552|Y165_AQUAE Hypothetical protein AQ_165
pir||E70315 conserved hypothetical protein aq_165 - Aquifex aeolicus
gb|AAC06516.1| (AE000676) hypothetical protein [Aquifex aeolicus]
Length = 229
Score = 53.9 bits (128), Expect = 1e-06
Identities = 53/226 (23%), Positives = 105/226 (46%), Gaps = 9/226 (3%)
Query: 4 VYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLKL 63
V++ + L I E +R RR++ + + +G +Y + K+ ++
Sbjct: 3 VFYSEERRGNLLILREGEVKHFRVRRIEKDEEFGV--IHEGKIYVCKVRREDKREISCEI 60
Query: 64 VGARLLEVMASKKTHLILSV-IEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDIAK 122
V L + K L SV +++K ++ I+ +LGV ++ S + E+ + K
Sbjct: 61 V-EELETKLPPKDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKK 119
Query: 123 LERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLD-FKGETLPASADFEK-- 179
E++++I+I + +Q R ME++ + + + +LD F P + E
Sbjct: 120 TEKWKRIVIEAMKQSRRPIPMEIKKPVRLSDLIPESEENIILDNFYEGVKPKDVNLEAKT 179
Query: 180 -GVIIGPEGGFSEPERGYFKEREIYRIPLD-MVLKSESACVFVASI 223
V++GPEGGFS+ E +E+ + L+ L++E+A V + SI
Sbjct: 180 YSVVVGPEGGFSKRESQILREKGFKSVLLEPYTLRTETAVVSIVSI 225
>ref|NP_404551.1| (NC_003143) conserved hypothetical protein [Yersinia pestis]
emb|CAC89777.1| (AJ414145) conserved hypothetical protein [Yersinia pestis]
Length = 243
Score = 52.0 bits (123), Expect = 5e-06
Identities = 52/205 (25%), Positives = 97/205 (46%), Gaps = 22/205 (10%)
Query: 4 VYHP--LAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALL 61
+YHP L L + E+ H+ R R+ L L + + ++ E KK+ ++
Sbjct: 6 IYHPQPLQANTELALTDEAANHVGRVLRMTEGQSLQLFDGSNQ-IFDAEIIRADKKNLIV 64
Query: 62 KLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKID-- 119
+L + + + HL + + +E + +LGV+ ++ ++ ++ K+D
Sbjct: 65 RLAEGQWEDRESPLNLHLGQVISRGEKMEFTVQKSIELGVNVITPLFS--ARCGVKLDGE 122
Query: 120 --IAKLERFQKILIHSCEQCGRSALMELE---------VFSNTKEALKAYPKASVLDFKG 168
K++++QKI I +CEQCGR+ + E+ S+ L +P+AS
Sbjct: 123 RLTKKIQQWQKIAIAACEQCGRNTIPEIRDAMQLADWCAESDDSLKLNLHPRAS---NSI 179
Query: 169 ETLPASADFEKGVIIGPEGGFSEPE 193
TLP+S + + ++IGPEGG S E
Sbjct: 180 NTLPSSLN-KVRLLIGPEGGLSADE 203
>ref|NP_638233.1| (NC_003902) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gb|AAM42157.1| (AE012401) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 244
Score = 51.2 bits (121), Expect = 8e-06
Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 21/229 (9%)
Query: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEIT---KKHA 59
+V PL + + ES HL R R++ L N DG Y HA IT K+ A
Sbjct: 7 YVALPLHSGGDVTLPEESANHLLRVLRLREGDACVLFN-GDGSDY---HARITVAGKREA 62
Query: 60 LLKLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKID 119
+ + L+ + + ++ IL +LGV+ + A+ ++ K+D
Sbjct: 63 RAVVERVEAVSNEPPLAITLLQGIARGEKMDLILQKATELGVTAVVPVNAERTE--VKLD 120
Query: 120 IAKLER----FQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASV---LDFKGE--- 169
A+LE+ ++ +++ +CEQ GR+ + L S+ ++A +A ++ LD GE
Sbjct: 121 AARLEKRMAHWRSVIVSACEQSGRARIPSLAPPSSLQDAARASDAQALRLTLDPHGEHRL 180
Query: 170 -TLPASADFEKGVIIGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESA 216
TL E V IGPEGG+S +R E + L +L++E+A
Sbjct: 181 GTLAVQPGQELIVAIGPEGGWSPRDRTTLGEAGFTGLRLGPRILRTETA 229
>ref|NP_347916.1| (NC_003030) Uncharacterized conserved protein, ortholog of YQEU
B.subtilis [Clostridium acetobutylicum]
gb|AAD02055.1| (AF036764) unknown [Clostridium acetobutylicum]
gb|AAK79256.1|AE007641_2 (AE007641) Uncharacterized conserved protein, ortholog of YQEU
B.subtilis [Clostridium acetobutylicum]
Length = 250
Score = 50.4 bits (119), Expect = 1e-05
Identities = 46/222 (20%), Positives = 103/222 (45%), Gaps = 15/222 (6%)
Query: 16 IEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLKLVGARLLEVMASK 75
I G+ H+Y+ R+K ++ + + + + E +I K++ +K++ + +
Sbjct: 18 IYGDDVKHIYKVLRLKVGEKVSINDC-NSHEFLGEIEQINKENVKVKIIENLDINNESPL 76
Query: 76 KTHLILSVIEIKNIEKILPFLNQLGVSKL-SLFYADFSQRNEKIDIAKLERFQKILIHSC 134
+L + ++ I+ +LG+ ++ L +NEK ++ K++R+ +I +
Sbjct: 77 NVYLYQGFPKAAKMDIIVQKNTELGIREIIPLITQRVVVKNEKSELKKVDRWNRIAFEAA 136
Query: 135 EQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLP------ASADFEKG------VI 182
+Q RS + +++ ++ A++ + ++ E +A EK ++
Sbjct: 137 KQSKRSVIPKVKDIASFNSAIEELKEMDLVLVPYENQEKVGMKKVAAAIEKNKIKNVAIV 196
Query: 183 IGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESACVFVASI 223
IGPEGGF E E K+ Y I L +L++E+A + S+
Sbjct: 197 IGPEGGFEETEIEELKKIGAYIITLGPRILRTETAGLVCTSL 238
>sp|O50188|YCA5_MYCHY Hypothetical 26.3 kDa protein in cilium adhesin operon (ORF5)
pir||T03807 hypothetical protein - Mycoplasma hyopneumoniae
gb|AAC32528.1| (AF012905) unknown [Mycoplasma hyopneumoniae]
Length = 227
Score = 50.4 bits (119), Expect = 1e-05
Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 76 KTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDIAK-LERFQKILIHSC 134
K L L++++ K+ E + ++GV+++ FY+ + D+ K L+R+++I +HS
Sbjct: 69 KVVLALAILKTKSFEFAIQKAVEIGVNEIWPFYSKNVSQKLSGDLEKKLKRWEQICLHSA 128
Query: 135 EQCGRSALMELEVFSNTKEALKAYPKASVLDFKGETLPASADFEKG-----VIIGPEGGF 189
+Q R+ + ++ + N K+ L+ V E + + +IIGPEGGF
Sbjct: 129 QQSFRNLIPKINLPINYKDLLEQAKNFPVKLISFERAKNNINIPDNPQNTIIIIGPEGGF 188
Query: 190 SEPERGYFKEREIYRIPL-DMVLKSESACVFV 220
+ E ++ I L +L+SE+A +F+
Sbjct: 189 DDVEIQQAEKLGFQSITLGKRILRSETAAIFL 220
>ref|NP_289518.1| (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
ref|NP_311849.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7]
ref|NP_417421.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
pir||A65080 hypothetical protein in endA-gshB intergenic region - Escherichia
coli (strain K-12)
gb|AAA69113.1| (U28377) ORF_o252 [Escherichia coli]
gb|AAC75983.1| (AE000377) orf, hypothetical protein [Escherichia coli K12]
gb|AAG58077.1|AE005525_3 (AE005525) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
dbj|BAB37245.1| (AP002563) hypothetical protein [Escherichia coli O157:H7]
Length = 252
Score = 50.1 bits (118), Expect = 2e-05
Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 27/241 (11%)
Query: 4 VYHP--LAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEIT---KKH 58
+YHP L + + ++ H+ R R+ L L DG ++ AEIT KK
Sbjct: 15 IYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLF---DGSNQVFD-AEITSASKKS 70
Query: 59 ALLKLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYAD---FSQRN 115
+K++ ++ + + HL + + +E + +LGVS ++ +++ +
Sbjct: 71 VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 130
Query: 116 EKIDIAKLERFQKILIHSCEQCGRSAL------MELEVFSNTKE---ALKAYPKASVLDF 166
E+++ KL+++QKI I +CEQCGR+ + M+LE + ++ L +P+AS
Sbjct: 131 ERLN-KKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRAS---N 186
Query: 167 KGETLPASADFEKGVIIGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESACVFVASIAQ 225
TLP + + ++IGPEGG S E + I L VL++E+ + + Q
Sbjct: 187 SINTLPLPVERVR-LLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQ 245
Query: 226 V 226
V
Sbjct: 246 V 246
>ref|NP_230123.1| (NC_002505) conserved hypothetical protein [Vibrio cholerae]
pir||B82319 conserved hypothetical protein VC0469 [imported] - Vibrio cholerae
(group O1 strain N16961)
gb|AAF93642.1| (AE004133) conserved hypothetical protein [Vibrio cholerae]
Length = 243
Score = 50.1 bits (118), Expect = 2e-05
Identities = 60/240 (25%), Positives = 113/240 (47%), Gaps = 25/240 (10%)
Query: 4 VYHPLAKEPV-----LKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKH 58
+YHP EP+ + + ++ H+ R R+++ + L + G + +E+ KK
Sbjct: 6 IYHP---EPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGL-GAEFPAVISEVGKKQ 61
Query: 59 ALLKLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFS--QRNE 116
L+ + + + HL + +E + +LGV+ ++ ++ + +E
Sbjct: 62 VLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLDE 121
Query: 117 KIDIAKLERFQKILIHSCEQCGRSA------LMELEVF-SNTKEALK--AYPKASVLDFK 167
K K++++QKI I +CEQCGR+ +M+LE + + EALK +P+A +
Sbjct: 122 KRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAK---YS 178
Query: 168 GETLPASADFEKGVIIGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESACVFVASIAQV 226
TLP + ++IGPEGG S E + + L VL++E+A + + QV
Sbjct: 179 LNTLPTPVS-KVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAALQV 237
>sp|P37912|YGGJ_ECOLI Hypothetical protein yggJ
Length = 243
Score = 50.1 bits (118), Expect = 2e-05
Identities = 63/241 (26%), Positives = 115/241 (47%), Gaps = 27/241 (11%)
Query: 4 VYHP--LAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEIT---KKH 58
+YHP L + + ++ H+ R R+ L L DG ++ AEIT KK
Sbjct: 6 IYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLF---DGSNQVFD-AEITSASKKS 61
Query: 59 ALLKLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYAD---FSQRN 115
+K++ ++ + + HL + + +E + +LGVS ++ +++ +
Sbjct: 62 VEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDS 121
Query: 116 EKIDIAKLERFQKILIHSCEQCGRSAL------MELEVFSNTKE---ALKAYPKASVLDF 166
E+++ KL+++QKI I +CEQCGR+ + M+LE + ++ L +P+AS
Sbjct: 122 ERLN-KKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQDEGLKLNLHPRAS---N 177
Query: 167 KGETLPASADFEKGVIIGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESACVFVASIAQ 225
TLP + + ++IGPEGG S E + I L VL++E+ + + Q
Sbjct: 178 SINTLPLPVERVR-LLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQ 236
Query: 226 V 226
V
Sbjct: 237 V 237
>ref|NP_531357.1| (NC_003304) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAL41673.1| (AE009034) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 239
Score = 49.7 bits (117), Expect = 2e-05
Identities = 53/234 (22%), Positives = 101/234 (42%), Gaps = 17/234 (7%)
Query: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62
F+ L++ + GE + +L R+ + + L N +DG KK +L+
Sbjct: 5 FIEASLSEGVAQEATGEQFNYLANVLRMTDGAEILLFNGRDGEWKAKLSFPSRKKISLVP 64
Query: 63 LVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDIAK 122
L R A + H + + +++ ++ ++ ++G L Q I
Sbjct: 65 LEQTRPQPDAA--ELHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQGK----IHN 118
Query: 123 LERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGE---------TLPA 173
E+ + I + EQCG +L E+ KE L+ +P+ + + E L A
Sbjct: 119 SEKLRANAIEAAEQCGILSLPEVAEPVKLKEMLETWPEDRRIIYCDEGDAGQNPLPILQA 178
Query: 174 SADFEKGVIIGPEGGFSEPERGYFKERE-IYRIPL-DMVLKSESACVFVASIAQ 225
+ + +++GPEGGFSE ER + + IPL +L++++A V ++ Q
Sbjct: 179 VKERKIALLVGPEGGFSEEERALLRSLAFVTPIPLGPRILRADTAAVAALAVIQ 232
>ref|NP_353680.1| (NC_003062) AGR_C_1169p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
gb|AAK86465.1| (AE008000) AGR_C_1169p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 245
Score = 49.7 bits (117), Expect = 2e-05
Identities = 53/234 (22%), Positives = 101/234 (42%), Gaps = 17/234 (7%)
Query: 3 FVYHPLAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLK 62
F+ L++ + GE + +L R+ + + L N +DG KK +L+
Sbjct: 11 FIEASLSEGVAQEATGEQFNYLANVLRMTDGAEILLFNGRDGEWKAKLSFPSRKKISLVP 70
Query: 63 LVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDIAK 122
L R A + H + + +++ ++ ++ ++G L Q I
Sbjct: 71 LEQTRPQPDAA--ELHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQGK----IHN 124
Query: 123 LERFQKILIHSCEQCGRSALMELEVFSNTKEALKAYPKASVLDFKGE---------TLPA 173
E+ + I + EQCG +L E+ KE L+ +P+ + + E L A
Sbjct: 125 SEKLRANAIEAAEQCGILSLPEVAEPVKLKEMLETWPEDRRIIYCDEGDAGQNPLPILQA 184
Query: 174 SADFEKGVIIGPEGGFSEPERGYFKERE-IYRIPL-DMVLKSESACVFVASIAQ 225
+ + +++GPEGGFSE ER + + IPL +L++++A V ++ Q
Sbjct: 185 VKERKIALLVGPEGGFSEEERALLRSLAFVTPIPLGPRILRADTAAVAALAVIQ 238
>ref|NP_384877.1| (NC_003047) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
emb|CAC45343.1| (AL591784) CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
Length = 245
Score = 49.7 bits (117), Expect = 2e-05
Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 17/218 (7%)
Query: 19 ESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLKLVGARLLEVMASKKTH 78
E + +L R+ S L + N +DG + E A ++K A+L V + +
Sbjct: 27 EQFNYLINVLRLGEGSSLLVFNGRDGE-WRAEIAMPSRKQAVLVAVEQTRPQPAPCDLVY 85
Query: 79 LILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDIAKLERFQKILIHSCEQCG 138
L + +++ ++ ++ ++G L Q I LER + +I + EQCG
Sbjct: 86 LF-APLKVGRLDYLVQKAVEMGAGVLQPVMTQHVQGK----IGSLERVRANVIEAAEQCG 140
Query: 139 RSALMELEVFSNTKEALKAYPKASVLDFKGE---------TLPASADFEKGVIIGPEGGF 189
+ +E ++ L +P+ + F E L A+ ++IGPEGGF
Sbjct: 141 VLGIPAVEEPRKLEDLLIDWPRDRRIVFCDEGNDSQNPLPILEGIAERRLALLIGPEGGF 200
Query: 190 SEPERGYFKERE-IYRIPL-DMVLKSESACVFVASIAQ 225
SE ER + R+ + IPL +L++++A V ++ Q
Sbjct: 201 SEAERDLLRSRDFVTAIPLGPRILRADTAAVAAMAVIQ 238
>ref|NP_229181.1| (NC_000853) conserved hypothetical protein [Thermotoga maritima]
pir||E72261 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
gb|AAD36450.1|AE001791_12 (AE001791) conserved hypothetical protein [Thermotoga maritima]
Length = 222
Score = 48.1 bits (113), Expect = 7e-05
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 20/206 (9%)
Query: 19 ESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLKLVGARLLEVMASKKTH 78
E H R R+K ++ + +GF YT + KK A K+V E ++K
Sbjct: 18 EREAHHMRVVRLKEGDVIEATD-GNGFSYTCILKSLKKKTAAAKIVKVEEKEKEPTEKLS 76
Query: 79 LILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDIAKLERFQKILIHSCEQCG 138
+++ + + ++ +LGV ++ + SQ +D AK+ ++ + +QC
Sbjct: 77 VVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLDKAKI-----VVREAAKQCK 131
Query: 139 R------SALMELEVFSNTKEALKAYPKASVLDFKGETLPASADFEKGVIIGPEGGFSEP 192
R S L +LE FS L LD L A+ + V++GPEGGFSE
Sbjct: 132 RYLFPKVSFLEKLE-FSGNVITLD-------LDASQNLLDANLEGSITVVVGPEGGFSEK 183
Query: 193 ERGYFKEREIYRIPLDMVLKSESACV 218
ER + +L+ E+A +
Sbjct: 184 ERELLRSSTTIVSLGKKILRFETAAI 209
>ref|NP_457486.1| (NC_003198) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
emb|CAD02918.1| (AL627277) conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 243
Score = 46.2 bits (108), Expect = 3e-04
Identities = 56/238 (23%), Positives = 111/238 (46%), Gaps = 21/238 (8%)
Query: 4 VYHP--LAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALL 61
+YHP L + + ++ H+ R R+ + L L + + ++ E +KK +
Sbjct: 6 IYHPELLTSGTQISLCEDAANHIGRVLRMGAGQALQLFDGSNQ-VFDAEIISASKKSVEV 64
Query: 62 KLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYAD---FSQRNEKI 118
+++ + + + HL + + +E + +LGVS ++ +++ NE++
Sbjct: 65 QVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDNERL 124
Query: 119 DIAKLERFQKILIHSCEQCGRSAL------MELEVFSNTKEA---LKAYPKASVLDFKGE 169
+ K +++QKI I +CEQCGR+ + M LE + +++ L +P+A
Sbjct: 125 N-KKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLRLNLHPRAHA---SIN 180
Query: 170 TLPASADFEKGVIIGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESACVFVASIAQV 226
TLP + + ++IGPEGG S E + I L VL++E+ + + QV
Sbjct: 181 TLPLPVERVR-LLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQV 237
>ref|NP_422209.1| (NC_002696) conserved hypothetical protein [Caulobacter crescentus
CB15]
gb|AAK25377.1| (AE006002) conserved hypothetical protein [Caulobacter crescentus
CB15]
Length = 238
Score = 45.4 bits (106), Expect = 5e-04
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 14/174 (8%)
Query: 29 RVKSASRLDLRNLKDGFLYTYEHAEITKKHALLKLVGARLLEVMASKKTHLILSVIEIKN 88
R+ + L L N +DG + E TK+ LLK + + LI+++++
Sbjct: 31 RLSVGAELLLFNGRDGE-WRATLVEATKRGCLLK-AEEQTRPMTLGPDLDLIVAMVKRGR 88
Query: 89 IEKILPFLNQLGVSKLSLFYADFSQRNEKIDIAKLERFQKILIHSCEQCGRSALMELEVF 148
+E I+ +LG ++ L R +D KL R I + + EQ GR + E+
Sbjct: 89 VETIVEKAAELGARRVRLTIT----RRTNVDFVKLGRLDAIAMEAAEQTGRLDVPEVADP 144
Query: 149 SNTKEALKAYPKASVLDFKGETLPASADFEK--------GVIIGPEGGFSEPER 194
+ L A+ A L F E A E ++IGPEGGF+ ER
Sbjct: 145 EKLDKILDAWDPARRLVFCDEGGDARPMIEALSGTTGPAAILIGPEGGFAPEER 198
>ref|NP_372101.1| (NC_002758) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
ref|NP_374690.1| (NC_002745) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB42669.1| (AP003134) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
dbj|BAB57739.1| (AP003362) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 250
Score = 44.7 bits (104), Expect = 8e-04
Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 17/220 (7%)
Query: 19 ESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLKLVGARLLEVMASKKTH 78
E H+ R S++ L D +Y E A+IT + L + +
Sbjct: 22 EDIHHITNVMRYDVGSKIIL-TFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVT 80
Query: 79 LILSVIEIKNIEKILPFLNQLGVSKLSLFYADFS--QRNEKIDIAKLERFQKILIHSCEQ 136
+ +I+ E +L +LG S + S + NE + K+ER+QKI+ + EQ
Sbjct: 81 ICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQ 140
Query: 137 CGRSALMELEVFSNTK----------EALKAYPK----ASVLDFKGETLPASADFEKGVI 182
R + ++ SN K L AY + + +FK A + +I
Sbjct: 141 SYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMI 200
Query: 183 IGPEGGFSEPERGYFKEREIYRIPLDMVLKSESACVFVAS 222
GPEGG SE E F +L++E+A ++ S
Sbjct: 201 FGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALS 240
>ref|NP_462010.1| (NC_003197) putative cytoplasmic protein [Salmonella typhimurium
LT2]
gb|AAL21969.1| (AE008842) putative cytoplasmic protein [Salmonella typhimurium
LT2]
Length = 259
Score = 44.3 bits (103), Expect = 0.001
Identities = 56/239 (23%), Positives = 110/239 (45%), Gaps = 23/239 (9%)
Query: 4 VYHP--LAKEPVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALL 61
+YHP L + + ++ H+ R R+ L L + + ++ E +KK +
Sbjct: 22 IYHPELLTSGTQISLCEDAANHIGRVLRMGPGQALQLFDGSNQ-VFDAEIISASKKSVEV 80
Query: 62 KLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKIDIA 121
+++ + + + HL + + +E + +LGVS ++ +++ + K+D
Sbjct: 81 QVMKGEIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSE--RCGVKLDSE 138
Query: 122 KL----ERFQKILIHSCEQCGRSAL------MELEVFSNTKEA---LKAYPKASVLDFKG 168
+L +++QKI I +CEQCGR+ + M LE + +++ L +P+A
Sbjct: 139 RLNKKRQQWQKIAIAACEQCGRNRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHA---SI 195
Query: 169 ETLPASADFEKGVIIGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESACVFVASIAQV 226
TLP + + ++IGPEGG S E + I L VL++E+ + + QV
Sbjct: 196 NTLPLPVERVR-LLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITALQV 253
>ref|NP_249110.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa]
pir||F83592 conserved hypothetical protein PA0419 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG03808.1|AE004479_3 (AE004479) conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 240
Score = 43.5 bits (101), Expect = 0.002
Identities = 46/192 (23%), Positives = 94/192 (48%), Gaps = 20/192 (10%)
Query: 47 YTYEHAEITKKHALLKLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSL 106
Y E E+ KK+ ++L + + + HL + + ++ + +LGV++++
Sbjct: 49 YLGELVEVGKKNVRVELREQFAGQPDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITP 108
Query: 107 FYADFSQ---RNEKIDIAKLERFQKILIHSCEQCGRSAL------MELEVFSNTKE---A 154
++ + ++E+ D +L+ ++++ I +CEQCGRS+L + LE + ++
Sbjct: 109 IVSERCEVRLKDERAD-KRLQHWRQVAISACEQCGRSSLPLIHPPLALEDWLRGRDDDLR 167
Query: 155 LKAYPKASVLDFKGETLPASADFEKGVIIGPEGGFSEPERGYFKEREIYRIPL-DMVLKS 213
L +P A+ L P+ F ++GPEGG S+ E + + L VL++
Sbjct: 168 LVLHPVAAPL--ASHAPPSRLAF----LVGPEGGLSDAEVEQAQAAGFHSARLGPRVLRT 221
Query: 214 ESACVFVASIAQ 225
E+A V ++AQ
Sbjct: 222 ETAPVVALAVAQ 233
>ref|NP_646346.1| (NC_003923) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
dbj|BAB95394.1| (AP004827) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 250
Score = 43.1 bits (100), Expect = 0.002
Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 17/220 (7%)
Query: 19 ESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLKLVGARLLEVMASKKTH 78
E H+ R S++ L D +Y E A+IT + L + +
Sbjct: 22 EDIHHITNVMRYDVGSKIIL-TFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVT 80
Query: 79 LILSVIEIKNIEKILPFLNQLGVSKLSLFYADFS--QRNEKIDIAKLERFQKILIHSCEQ 136
+ +I+ E +L +LG S + S + NE K+ER+QKI+ + EQ
Sbjct: 81 ICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQ 140
Query: 137 CGRSALMELEVFSNTK----------EALKAYPK----ASVLDFKGETLPASADFEKGVI 182
R + ++ SN K L AY + + +FK A + +I
Sbjct: 141 SYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMI 200
Query: 183 IGPEGGFSEPERGYFKEREIYRIPLDMVLKSESACVFVAS 222
GPEGG SE E F +L++E+A ++ S
Sbjct: 201 FGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALS 240
>ref|NP_297483.1| (NC_002488) conserved hypothetical protein [Xylella fastidiosa
9a5c]
pir||F82838 conserved hypothetical protein XF0190 [imported] - Xylella
fastidiosa (strain 9a5c)
gb|AAF83003.1|AE003872_14 (AE003872) conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 244
Score = 42.4 bits (98), Expect = 0.004
Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 23/219 (10%)
Query: 23 HLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLKLVGARLLEVMASKKTHLILS 82
HL R R+ L N DG Y ++ A ++ G + + L+ +
Sbjct: 27 HLLRVLRLCEGDTCVLFN-GDGHDYLARLIATGRREAWARIEGVSEVCNESPLAITLVQA 85
Query: 83 VIEIKNIEKILPFLNQLGVSKLSLFYADFSQRNEKID---IAK-LERFQKILIHSCEQCG 138
+ + ++ I +LGV +++ D + ++D +AK L + ++I +CEQCG
Sbjct: 86 IARGEKMDLIAQKATELGV--VAIVPVDTERSGVRLDSERVAKRLAHWNNVVISACEQCG 143
Query: 139 RSALMELEVFSNTKEALKAYPK-------ASVLDFKGE----TLPASADFEKGVIIGPEG 187
R+ + E+++ AL+A P+ +LD K E TL + IGPEG
Sbjct: 144 RTRVPEVQM----PRALQALPEILHPDTLRLILDPKSEHRLSTLSRLTPVAVTIAIGPEG 199
Query: 188 GFSEPERGYFKEREIYRIPL-DMVLKSESACVFVASIAQ 225
G+S + K+ L +L++E+A + ++ Q
Sbjct: 200 GWSPRDLEILKDAGFIGFSLGPRILRTETAGLTAIAVLQ 238
>ref|NP_470843.1| (NC_003212) similar to unknown proteins [Listeria innocua]
emb|CAC96738.1| (AL596168) similar to unknown proteins [Listeria innocua]
Length = 255
Score = 42.4 bits (98), Expect = 0.004
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 23/242 (9%)
Query: 3 FVYHPLAKE-PVLKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALL 61
FV + L + L I GE++ H+ R R+K + ++ + A I ++ LL
Sbjct: 5 FVNYELENDNDTLSITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITA-INEEEVLL 63
Query: 62 KLVGARLLEVMASKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFS--QRNEKID 119
LV + + + + + +E I+ +LG K + A+ S + ++K
Sbjct: 64 NLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELGAHKFIPYKAERSVVKWDDKKV 123
Query: 120 IAKLERFQKILIHSCEQCGRSALMELEVFSNTKE----------ALKAYPKA------SV 163
I K+ER QKI + EQ R+ + E+ ++ KE + AY ++ SV
Sbjct: 124 IKKIERLQKIAQEAAEQSHRTVIPEVHYAASFKELMFDHVHYDYVIAAYEESAREGEDSV 183
Query: 164 LDFKGETLPASADFEKGVIIGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESACVFVAS 222
L +T+ I GPEGG SE E +E L +L++E+A ++V S
Sbjct: 184 LTNLFQTMKPGQSVL--CIFGPEGGISEKELLLLQEVNAKLAGLGPRILRTETAPLYVLS 241
Query: 223 IA 224
A
Sbjct: 242 AA 243
>ref|NP_464995.1| (NC_003210) similar to unknown proteins [Listeria monocytogenes
EGD-e]
pir||T43741 conserved hypothetical protein orf29 [imported] - Listeria
monocytogenes
dbj|BAA82792.1| (AB023064) orf29 [Listeria monocytogenes]
emb|CAC99548.1| (AL591979) similar to unknown proteins [Listeria monocytogenes]
Length = 255
Score = 42.4 bits (98), Expect = 0.004
Identities = 57/231 (24%), Positives = 102/231 (43%), Gaps = 24/231 (10%)
Query: 14 LKIEGESYTHLYRSRRVKSASRLDLRNLKDGFLYTYEHAEITKKHALLKLVGARLLEVMA 73
L I GE++ H+ R R+K + ++ + A I ++ LL LV +
Sbjct: 17 LAITGENFHHIARVMRMKESDQVFIVFPSKKTCIAAITA-INEEEVLLNLVKWLEEDTEL 75
Query: 74 SKKTHLILSVIEIKNIEKILPFLNQLGVSKLSLFYADFS--QRNEKIDIAKLERFQKILI 131
+ + + + +E I+ +LG K + A+ S + ++K I K+ER QKI
Sbjct: 76 PIEITIASGLPKGDKLELIIQKSTELGAHKFISYKAERSVVKWDDKKVIKKIERLQKIAQ 135
Query: 132 HSCEQCGRSALMELEVFSNTKE----------ALKAYPKASVLDFKGETLPASADFEKG- 180
+ EQ R+ + E+ ++ KE + AY +++ +GE ++ F+
Sbjct: 136 EAAEQSHRTIIPEVHYAASFKELMFGHVHYDFVIAAYEESA---REGEDSALASLFQTMK 192
Query: 181 ------VIIGPEGGFSEPERGYFKEREIYRIPL-DMVLKSESACVFVASIA 224
I GPEGG SE E +E L +L++E+A ++V S A
Sbjct: 193 PGQSVLCIFGPEGGISEKELLLLEEANAKLAGLGPRILRTETAPLYVLSAA 243
Database: /home/scwang/download_20020708_db/nr
Posted date: Aug 7, 2002 12:55 PM
Number of letters in database: 324,149,939
Number of sequences in database: 1,026,957
Lambda K H
0.321 0.138 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,547,704
Number of Sequences: 1026957
Number of extensions: 4942836
Number of successful extensions: 12999
Number of sequences better than 1.0e-02: 32
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 12964
Number of HSP's gapped (non-prelim): 32
length of query: 226
length of database: 324,149,939
effective HSP length: 117
effective length of query: 109
effective length of database: 203,995,970
effective search space: 22235560730
effective search space used: 22235560730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 95 (41.2 bits)