BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645003|ref|NP_207173.1| hypothetical protein
[Helicobacter pylori 26695]
         (143 letters)

Database: /home/scwang/download_20020708_db/nr
           1,026,957 sequences; 324,149,939 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_207173.1|  (NC_000915) hypothetical protein [Helicoba...   266  2e-71
ref|NP_223723.1|  (NC_000921) putative [Helicobacter pylori ...   255  5e-68
ref|NP_604197.1|  (NC_003454) Integral membrane protein [Fus...    39  0.010

>ref|NP_207173.1| (NC_000915) hypothetical protein [Helicobacter pylori 26695]
 pir||G64566 hypothetical protein HP0375 - Helicobacter pylori (strain 26695)
 gb|AAD07449.1| (AE000554) H. pylori predicted coding region HP0375 [Helicobacter
           pylori 26695]
          Length = 143

 Score =  266 bits (681), Expect = 2e-71
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MLEMSLQALNTQDSSVMAQSLLIHAFFAALLALAFMINLYTLFKEKNFIQLNKKIYLVMP 60
           MLEMSLQALNTQDSSVMAQSLLIHAFFAALLALAFMINLYTLFKEKNFIQLNKKIYLVMP
Sbjct: 1   MLEMSLQALNTQDSSVMAQSLLIHAFFAALLALAFMINLYTLFKEKNFIQLNKKIYLVMP 60

Query: 61  AIYILLSIALLSGIFIWAMQQFAFSFSVVAMLLGLLLMLIAEIKRHKSVKLAITKKERME 120
           AIYILLSIALLSGIFIWAMQQFAFSFSVVAMLLGLLLMLIAEIKRHKSVKLAITKKERME
Sbjct: 61  AIYILLSIALLSGIFIWAMQQFAFSFSVVAMLLGLLLMLIAEIKRHKSVKLAITKKERME 120

Query: 121 AYIKKAKILYFLETILIVVLMGL 143
           AYIKKAKILYFLETILIVVLMGL
Sbjct: 121 AYIKKAKILYFLETILIVVLMGL 143



>ref|NP_223723.1| (NC_000921) putative [Helicobacter pylori J99]
 pir||B71860 hypothetical protein jhp1006 - Helicobacter pylori (strain J99)
 gb|AAD06588.1| (AE001529) putative [Helicobacter pylori J99]
          Length = 143

 Score =  255 bits (652), Expect = 5e-68
 Identities = 133/143 (93%), Positives = 139/143 (97%)

Query: 1   MLEMSLQALNTQDSSVMAQSLLIHAFFAALLALAFMINLYTLFKEKNFIQLNKKIYLVMP 60
           MLEMSLQALNTQDSSVMAQSLL+HAFFAALLALAFMINLYTLFKEKNFIQLN+KIYLVMP
Sbjct: 1   MLEMSLQALNTQDSSVMAQSLLVHAFFAALLALAFMINLYTLFKEKNFIQLNRKIYLVMP 60

Query: 61  AIYILLSIALLSGIFIWAMQQFAFSFSVVAMLLGLLLMLIAEIKRHKSVKLAITKKERME 120
           AIYILLSIALLSG+FIWAMQQF FSFS V MLLGLLLMLIAEIKRHKSVK AITKKERM+
Sbjct: 61  AIYILLSIALLSGVFIWAMQQFEFSFSAVVMLLGLLLMLIAEIKRHKSVKFAITKKERMK 120

Query: 121 AYIKKAKILYFLETILIVVLMGL 143
           AYIKKAKILYFLETILI+VLMG+
Sbjct: 121 AYIKKAKILYFLETILIIVLMGI 143



>ref|NP_604197.1| (NC_003454) Integral membrane protein [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gb|AAL95496.1| (AE010635) Integral membrane protein [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 263

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 10/129 (7%)

Query: 10  NTQDSSVMAQSLLIHAFFAALLALAFMINLYTLFKEKNFIQLNKKIYLVMPAIYILLSIA 69
           N + +S +  +++I  FF   ++      ++   K  NFI     IY++  +IYILL   
Sbjct: 138 NNETTSFIFFTIIILTFF--FISTINRRKIFNYIKNNNFITFIYAIYII--SIYILLKSK 193

Query: 70  LLSGIFIWAMQQFAFSFSVVAMLLGLLLMLIAEIKRHKSVKLAITKKERMEAYIKKAKIL 129
            +       M  F F+F  + +   L   ++  IK H S KL I    R     K+A+ L
Sbjct: 194 GIINTLFDFMDLF-FTFIYIYIFFKLFQFILEIIKYHSSFKLKIKPFSR-----KQARKL 247

Query: 130 YFLETILIV 138
           Y++  ++I+
Sbjct: 248 YYILYLIIL 256



  Database: /home/scwang/download_20020708_db/nr
    Posted date:  Aug 7, 2002 12:55 PM
  Number of letters in database: 324,149,939
  Number of sequences in database:  1,026,957
  
Lambda     K      H
   0.334    0.143    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,546,060
Number of Sequences: 1026957
Number of extensions: 1906548
Number of successful extensions: 12692
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12689
Number of HSP's gapped (non-prelim): 3
length of query: 143
length of database: 324,149,939
effective HSP length: 119
effective length of query: 24
effective length of database: 201,942,056
effective search space: 4846609344
effective search space used: 4846609344
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 89 (38.9 bits)